Wall clock time and date at job start Mon Mar 30 2020 04:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46992 * 2 1 4 4 O 1.42903 * 109.47564 * 240.00179 * 2 1 3 5 5 C 1.50697 * 109.47355 * 120.00057 * 2 1 3 6 6 C 1.38252 * 119.88769 * 95.27393 * 5 2 1 7 7 C 1.37968 * 120.23513 * 180.27729 * 6 5 2 8 8 C 1.39680 * 119.99800 * 359.72998 * 7 6 5 9 9 C 1.43200 * 120.11682 * 179.97438 * 8 7 6 10 10 N 6.84915 * 109.33601 * 120.11999 * 2 1 3 11 11 C 1.39503 * 119.77045 * 359.97438 * 8 7 6 12 12 C 1.38673 * 119.76609 * 359.97438 * 11 8 7 13 13 N 1.39708 * 119.99838 * 180.02562 * 12 11 8 14 14 C 1.46901 * 110.99928 * 63.95363 * 13 12 11 15 15 C 1.46901 * 110.99820 * 300.00186 * 13 12 11 16 16 C 1.50701 * 109.46921 * 189.99967 * 15 13 12 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16 24 24 H 1.08998 * 109.47224 * 300.00315 * 1 2 3 25 25 H 1.09000 * 109.46588 * 59.99913 * 1 2 3 26 26 H 1.08998 * 109.46996 * 179.97438 * 1 2 3 27 27 H 0.96698 * 113.99358 * 300.00440 * 4 2 1 28 28 H 1.08000 * 119.88018 * 0.02562 * 6 5 2 29 29 H 1.07997 * 120.00006 * 179.74163 * 7 6 5 30 30 H 1.07996 * 120.11803 * 180.02562 * 11 8 7 31 31 H 1.09001 * 109.47121 * 296.04551 * 14 13 12 32 32 H 1.09005 * 109.47342 * 56.04645 * 14 13 12 33 33 H 1.08999 * 109.46894 * 176.04564 * 14 13 12 34 34 H 1.09002 * 109.47401 * 69.99995 * 15 13 12 35 35 H 1.09001 * 109.46874 * 310.00007 * 15 13 12 36 36 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6736 -1.1668 5 6 2.0324 -0.7104 1.2304 6 6 2.3659 -2.0504 1.1643 7 6 2.8212 -2.7093 2.2877 8 6 2.9518 -2.0210 3.4961 9 6 3.4235 -2.7025 4.6639 10 7 3.7978 -3.2431 5.5902 11 6 2.6211 -0.6673 3.5614 12 6 2.1655 -0.0143 2.4261 13 7 1.8335 1.3414 2.4859 14 6 3.0132 2.1590 2.7982 15 6 0.7572 1.5774 3.4574 16 6 0.2587 2.9930 3.3208 17 1 0.6972 3.6513 2.5855 18 6 -0.7580 3.4474 4.1338 19 7 -1.2923 2.6455 5.0289 20 14 -1.3764 5.2018 3.9639 21 1 -1.8955 5.4127 2.5886 22 1 -2.4643 5.4404 4.9462 23 1 -0.2607 6.1472 4.2223 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.7211 -1.5951 -1.2329 28 1 2.2659 -2.5844 0.2308 29 1 3.0767 -3.7572 2.2328 30 1 2.7204 -0.1295 4.4927 31 1 3.3785 1.9047 3.7932 32 1 3.7948 1.9648 2.0636 33 1 2.7418 3.2143 2.7696 34 1 1.1383 1.4223 4.4668 35 1 -0.0620 0.8838 3.2678 36 1 -2.0073 2.9653 5.6011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131420569.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:39 Heat of formation + Delta-G solvation = 8.032652 kcal Electronic energy + Delta-G solvation = -19213.333073 eV Core-core repulsion = 16276.630813 eV Total energy + Delta-G solvation = -2936.702260 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.12679 -37.26710 -36.83722 -35.57783 -32.72471 -31.84410 -30.06666 -29.12966 -27.31317 -25.19650 -24.38935 -22.81405 -21.46938 -20.67303 -18.24074 -17.16868 -16.50750 -16.00101 -15.12549 -14.93906 -14.62908 -14.31578 -14.01192 -13.86137 -13.58668 -13.42229 -13.12763 -12.69607 -12.59748 -12.25686 -12.11004 -11.79525 -11.69768 -11.41944 -11.18811 -11.04741 -10.82806 -10.66411 -10.61440 -10.13328 -10.04439 -9.43149 -8.77000 -8.55669 -8.39777 -7.67513 -6.13808 -4.16699 0.85972 1.40993 2.72626 2.99959 3.27324 3.32490 3.34419 3.91060 3.96794 4.31245 4.54861 4.61359 4.81745 4.95333 5.09775 5.22252 5.45172 5.50509 5.62340 5.71414 5.85777 6.00121 6.01707 6.08056 6.19994 6.32899 6.37658 6.56352 6.59267 6.69420 6.79552 7.11689 7.16430 7.53762 7.67630 7.71998 7.83880 7.99940 8.39382 8.89696 9.48312 10.96643 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.017001 B = 0.006665 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.535152 B = 4199.953462 C = 5303.253030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.150 3.850 3 H 0.126 0.874 4 O -0.564 6.564 5 C -0.070 4.070 6 C -0.116 4.116 7 C -0.082 4.082 8 C -0.030 4.030 9 C 0.263 3.737 10 N -0.431 5.431 11 C -0.097 4.097 12 C 0.120 3.880 13 N -0.510 5.510 14 C 0.039 3.961 15 C 0.198 3.802 16 C -0.513 4.513 17 H 0.066 0.934 18 C 0.058 3.942 19 N -0.896 5.896 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.288 1.288 23 H -0.277 1.277 24 H 0.087 0.913 25 H 0.062 0.938 26 H 0.049 0.951 27 H 0.367 0.633 28 H 0.131 0.869 29 H 0.129 0.871 30 H 0.131 0.869 31 H 0.020 0.980 32 H 0.050 0.950 33 H 0.083 0.917 34 H -0.002 1.002 35 H 0.033 0.967 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.739 -7.503 -9.209 13.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.092 3.908 3 H 0.143 0.857 4 O -0.369 6.369 5 C -0.072 4.072 6 C -0.134 4.134 7 C -0.102 4.102 8 C -0.034 4.034 9 C -0.052 4.052 10 N -0.106 5.106 11 C -0.120 4.120 12 C 0.025 3.975 13 N -0.231 5.231 14 C -0.107 4.107 15 C 0.075 3.925 16 C -0.552 4.552 17 H 0.084 0.916 18 C -0.144 4.144 19 N -0.534 5.534 20 Si 0.727 3.273 21 H -0.200 1.200 22 H -0.214 1.214 23 H -0.202 1.202 24 H 0.105 0.895 25 H 0.081 0.919 26 H 0.068 0.932 27 H 0.214 0.786 28 H 0.148 0.852 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.038 0.962 32 H 0.069 0.931 33 H 0.101 0.899 34 H 0.015 0.985 35 H 0.051 0.949 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.259 -7.578 -8.182 12.789 hybrid contribution -0.629 0.341 0.847 1.109 sum 5.630 -7.238 -7.335 11.742 Atomic orbital electron populations 1.22397 0.94774 1.01881 1.04201 1.20772 0.93569 0.96508 0.79974 0.85677 1.86652 1.77385 1.28710 1.44185 1.20777 0.96897 0.93659 0.95867 1.20654 1.00739 0.93789 0.98228 1.20959 0.98760 0.99533 0.90965 1.15889 1.05886 0.93081 0.88579 1.25818 0.93209 0.93193 0.93007 1.81202 1.09927 1.09095 1.10396 1.21931 0.97211 0.92772 1.00077 1.18826 0.95507 0.91817 0.91300 1.59992 1.09458 1.00157 1.53527 1.22294 0.91023 0.99584 0.97845 1.19855 0.87322 0.97927 0.87371 1.21047 1.18574 0.96458 1.19074 0.91610 1.24973 0.96387 0.97896 0.95116 1.69941 1.26118 1.35805 1.21573 0.86544 0.78432 0.84407 0.77945 1.20050 1.21366 1.20226 0.89450 0.91860 0.93180 0.78608 0.85174 0.85354 0.85073 0.96155 0.93118 0.89868 0.98459 0.94874 0.92695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.41 9.52 37.16 0.35 -2.05 16 2 C 0.15 2.06 3.52 -27.88 -0.10 1.96 16 3 H 0.13 1.95 7.61 -51.93 -0.40 1.55 16 4 O -0.56 -6.83 12.98 -35.23 -0.46 -7.29 16 5 C -0.07 -0.98 5.09 -104.34 -0.53 -1.51 16 6 C -0.12 -1.30 9.28 -39.68 -0.37 -1.67 16 7 C -0.08 -0.93 9.75 -39.14 -0.38 -1.31 16 8 C -0.03 -0.42 5.73 -106.96 -0.61 -1.03 16 9 C 0.26 3.94 15.33 -22.47 -0.34 3.59 16 10 N -0.43 -7.18 18.54 41.84 0.78 -6.40 16 11 C -0.10 -1.54 8.40 -38.95 -0.33 -1.87 16 12 C 0.12 1.98 4.64 -83.83 -0.39 1.60 16 13 N -0.51 -9.61 3.74 -180.36 -0.68 -10.29 16 14 C 0.04 0.68 9.09 60.07 0.55 1.23 16 15 C 0.20 4.65 4.30 -4.97 -0.02 4.63 16 16 C -0.51 -13.19 8.51 -34.44 -0.29 -13.48 16 17 H 0.07 1.66 7.10 -52.49 -0.37 1.28 16 18 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 19 N -0.90 -25.30 13.29 55.43 0.74 -24.57 16 20 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 21 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 22 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 23 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 24 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.37 2.97 7.31 45.56 0.33 3.31 16 28 H 0.13 1.03 6.38 -52.49 -0.33 0.70 16 29 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 30 H 0.13 2.20 7.15 -52.49 -0.38 1.82 16 31 H 0.02 0.34 7.47 -51.93 -0.39 -0.04 16 32 H 0.05 0.76 8.13 -51.93 -0.42 0.34 16 33 H 0.08 1.52 6.86 -51.93 -0.36 1.16 16 34 H 0.00 -0.06 7.47 -51.93 -0.39 -0.45 16 35 H 0.03 0.84 8.06 -51.93 -0.42 0.43 16 36 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 312.36 15.07 4.71 4.71 Total: -1.00 -28.95 312.36 -6.44 -35.39 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -3.94 Total: 1.35 kcal Atomic # 6 Polarization: -5.89 SS G_CDS: -2.57 Total: -8.46 kcal Atomic # 7 Polarization: -42.09 SS G_CDS: 0.84 Total: -41.26 kcal Atomic # 8 Polarization: -6.83 SS G_CDS: -0.46 Total: -7.29 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.95 -6.44 -35.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131420569.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.425 kcal (2) G-P(sol) polarization free energy of solvation -28.950 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.392 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds