Wall clock time and date at job start Mon Mar 30 2020 04:44:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46992 * 2 1 4 4 O 1.42903 * 109.47564 * 240.00179 * 2 1 3 5 5 C 1.50697 * 109.47355 * 120.00057 * 2 1 3 6 6 C 1.38252 * 119.88769 * 95.27393 * 5 2 1 7 7 C 1.37968 * 120.23513 * 180.27729 * 6 5 2 8 8 C 1.39680 * 119.99800 * 359.72998 * 7 6 5 9 9 C 1.43200 * 120.11682 * 179.97438 * 8 7 6 10 10 N 6.84915 * 109.33601 * 120.11999 * 2 1 3 11 11 C 1.39503 * 119.77045 * 359.97438 * 8 7 6 12 12 C 1.38673 * 119.76609 * 359.97438 * 11 8 7 13 13 N 1.39708 * 119.99838 * 180.02562 * 12 11 8 14 14 C 1.46901 * 110.99928 * 63.95363 * 13 12 11 15 15 C 1.46901 * 110.99820 * 300.00186 * 13 12 11 16 16 C 1.50701 * 109.46921 * 189.99967 * 15 13 12 17 17 H 1.07998 * 120.00129 * 0.02562 * 16 15 13 18 18 C 1.37880 * 119.99861 * 179.97438 * 16 15 13 19 19 N 1.31510 * 119.99913 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99734 * 180.02562 * 18 16 15 21 21 H 1.48506 * 109.47294 * 60.00559 * 20 18 16 22 22 H 1.48503 * 109.46954 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47431 * 300.00157 * 20 18 16 24 24 H 1.08998 * 109.47224 * 300.00315 * 1 2 3 25 25 H 1.09000 * 109.46588 * 59.99913 * 1 2 3 26 26 H 1.08998 * 109.46996 * 179.97438 * 1 2 3 27 27 H 0.96698 * 113.99358 * 300.00440 * 4 2 1 28 28 H 1.08000 * 119.88018 * 0.02562 * 6 5 2 29 29 H 1.07997 * 120.00006 * 179.74163 * 7 6 5 30 30 H 1.07996 * 120.11803 * 180.02562 * 11 8 7 31 31 H 1.09001 * 109.47121 * 296.04551 * 14 13 12 32 32 H 1.09005 * 109.47342 * 56.04645 * 14 13 12 33 33 H 1.08999 * 109.46894 * 176.04564 * 14 13 12 34 34 H 1.09002 * 109.47401 * 69.99995 * 15 13 12 35 35 H 1.09001 * 109.46874 * 310.00007 * 15 13 12 36 36 H 0.97002 * 119.99768 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0065 -0.6736 -1.1668 5 6 2.0324 -0.7104 1.2304 6 6 2.3659 -2.0504 1.1643 7 6 2.8212 -2.7093 2.2877 8 6 2.9518 -2.0210 3.4961 9 6 3.4235 -2.7025 4.6639 10 7 3.7978 -3.2431 5.5902 11 6 2.6211 -0.6673 3.5614 12 6 2.1655 -0.0143 2.4261 13 7 1.8335 1.3414 2.4859 14 6 3.0132 2.1590 2.7982 15 6 0.7572 1.5774 3.4574 16 6 0.2587 2.9930 3.3208 17 1 0.6972 3.6513 2.5855 18 6 -0.7580 3.4474 4.1338 19 7 -1.2923 2.6455 5.0289 20 14 -1.3764 5.2018 3.9639 21 1 -1.8955 5.4127 2.5886 22 1 -2.4643 5.4404 4.9462 23 1 -0.2607 6.1472 4.2223 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.7211 -1.5951 -1.2329 28 1 2.2659 -2.5844 0.2308 29 1 3.0767 -3.7572 2.2328 30 1 2.7204 -0.1295 4.4927 31 1 3.3785 1.9047 3.7932 32 1 3.7948 1.9648 2.0636 33 1 2.7418 3.2143 2.7696 34 1 1.1383 1.4223 4.4668 35 1 -0.0620 0.8838 3.2678 36 1 -2.0073 2.9653 5.6011 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131420569.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:44:38 Heat of formation + Delta-G solvation = -10.645812 kcal Electronic energy + Delta-G solvation = -19214.143032 eV Core-core repulsion = 16276.630813 eV Total energy + Delta-G solvation = -2937.512219 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.30371 -38.35470 -38.20029 -36.82889 -34.68147 -32.94366 -31.25364 -30.36307 -29.07860 -26.74141 -25.52951 -24.40305 -22.56274 -22.04946 -19.52149 -18.41036 -18.14999 -17.26190 -16.77172 -16.20258 -15.98463 -15.60090 -15.29670 -15.06261 -14.95598 -14.63485 -14.53214 -14.01681 -13.88051 -13.74340 -13.35761 -13.28895 -12.92108 -12.75687 -12.69585 -12.60109 -12.38309 -12.22572 -11.96889 -11.75766 -11.35615 -11.08162 -10.59976 -9.87078 -9.57064 -9.24898 -8.19270 -6.28851 -0.26517 0.31059 1.44271 1.45959 1.51878 1.53744 1.83373 2.41463 2.77205 2.82303 3.13901 3.20029 3.59839 3.76201 3.87946 4.09855 4.37175 4.39125 4.45825 4.54767 4.64232 4.76271 4.77864 4.93842 5.04420 5.10955 5.17140 5.24776 5.27594 5.30311 5.45965 5.59435 5.69892 5.79554 6.08022 6.14763 6.34647 6.74360 6.86014 6.97591 7.40856 8.91271 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.017001 B = 0.006665 C = 0.005279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.535152 B = 4199.953462 C = 5303.253030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.161 3.839 3 H 0.102 0.898 4 O -0.564 6.564 5 C -0.070 4.070 6 C -0.101 4.101 7 C -0.059 4.059 8 C -0.036 4.036 9 C 0.280 3.720 10 N -0.463 5.463 11 C -0.111 4.111 12 C 0.088 3.912 13 N -0.506 5.506 14 C 0.042 3.958 15 C 0.219 3.781 16 C -0.520 4.520 17 H 0.069 0.931 18 C 0.005 3.995 19 N -0.934 5.934 20 Si 0.965 3.035 21 H -0.266 1.266 22 H -0.288 1.288 23 H -0.269 1.269 24 H 0.047 0.953 25 H 0.069 0.931 26 H 0.072 0.928 27 H 0.388 0.612 28 H 0.178 0.822 29 H 0.168 0.832 30 H 0.108 0.892 31 H 0.014 0.986 32 H 0.078 0.922 33 H 0.069 0.931 34 H -0.034 1.034 35 H 0.006 0.994 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.288 -8.764 -11.656 15.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.102 3.898 3 H 0.120 0.880 4 O -0.372 6.372 5 C -0.072 4.072 6 C -0.119 4.119 7 C -0.079 4.079 8 C -0.040 4.040 9 C -0.034 4.034 10 N -0.139 5.139 11 C -0.134 4.134 12 C -0.006 4.006 13 N -0.226 5.226 14 C -0.105 4.105 15 C 0.095 3.905 16 C -0.559 4.559 17 H 0.087 0.913 18 C -0.193 4.193 19 N -0.574 5.574 20 Si 0.790 3.210 21 H -0.191 1.191 22 H -0.214 1.214 23 H -0.194 1.194 24 H 0.066 0.934 25 H 0.088 0.912 26 H 0.091 0.909 27 H 0.238 0.762 28 H 0.195 0.805 29 H 0.185 0.815 30 H 0.126 0.874 31 H 0.033 0.967 32 H 0.096 0.904 33 H 0.088 0.912 34 H -0.016 1.016 35 H 0.024 0.976 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.830 -8.856 -10.652 15.445 hybrid contribution -0.747 0.625 1.529 1.813 sum 6.082 -8.231 -9.123 13.710 Atomic orbital electron populations 1.22313 0.94998 1.02856 1.02502 1.20442 0.93142 0.95779 0.80484 0.88014 1.86635 1.77251 1.30409 1.42941 1.20930 0.96534 0.94886 0.94825 1.21133 0.98410 0.92391 0.99947 1.21412 0.96050 1.01042 0.89379 1.15935 1.06459 0.92201 0.89386 1.25932 0.92335 0.92438 0.92741 1.81217 1.11216 1.10364 1.11102 1.21731 0.98641 0.93895 0.99122 1.18896 0.98100 0.90783 0.92825 1.59825 1.09072 1.02358 1.51394 1.22289 0.91165 0.98585 0.98465 1.19387 0.87966 0.96293 0.86887 1.21406 1.18306 0.97506 1.18633 0.91316 1.25838 0.96721 1.01962 0.94811 1.70078 1.26856 1.37797 1.22685 0.85504 0.77886 0.79547 0.78108 1.19102 1.21400 1.19359 0.93385 0.91227 0.90905 0.76192 0.80527 0.81481 0.87436 0.96715 0.90380 0.91213 1.01600 0.97590 0.92820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.44 9.52 71.98 0.69 -3.75 16 2 C 0.16 4.09 3.52 29.85 0.10 4.20 16 3 H 0.10 3.10 7.61 -2.38 -0.02 3.08 16 4 O -0.56 -11.46 12.98 -148.98 -1.93 -13.40 16 5 C -0.07 -1.81 5.09 -19.68 -0.10 -1.91 16 6 C -0.10 -1.81 9.28 22.21 0.21 -1.60 16 7 C -0.06 -1.10 9.75 22.55 0.22 -0.88 16 8 C -0.04 -0.94 5.73 -21.38 -0.12 -1.06 16 9 C 0.28 8.16 15.33 88.33 1.35 9.51 16 10 N -0.46 -15.24 18.54 19.00 0.35 -14.89 16 11 C -0.11 -3.60 8.40 22.68 0.19 -3.41 16 12 C 0.09 2.93 4.64 38.17 0.18 3.11 16 13 N -0.51 -19.76 3.74 -724.54 -2.71 -22.47 16 14 C 0.04 1.48 9.09 127.69 1.16 2.64 16 15 C 0.22 10.88 4.30 85.56 0.37 11.25 16 16 C -0.52 -27.67 8.51 25.60 0.22 -27.45 16 17 H 0.07 3.54 7.10 -2.91 -0.02 3.52 16 18 C 0.00 0.27 5.46 84.66 0.46 0.73 16 19 N -0.93 -54.67 13.29 21.45 0.28 -54.38 16 20 Si 0.96 42.76 29.54 68.60 2.03 44.79 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 23 H -0.27 -11.47 7.11 99.48 0.71 -10.77 16 24 H 0.05 1.65 8.14 -2.39 -0.02 1.64 16 25 H 0.07 1.70 8.14 -2.39 -0.02 1.69 16 26 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 27 H 0.39 4.17 7.31 -74.06 -0.54 3.63 16 28 H 0.18 1.57 6.38 -2.91 -0.02 1.55 16 29 H 0.17 1.94 8.06 -2.91 -0.02 1.92 16 30 H 0.11 3.91 7.15 -2.91 -0.02 3.89 16 31 H 0.01 0.52 7.47 -2.39 -0.02 0.50 16 32 H 0.08 2.32 8.13 -2.38 -0.02 2.30 16 33 H 0.07 2.62 6.86 -2.39 -0.02 2.61 16 34 H -0.03 -1.85 7.47 -2.39 -0.02 -1.87 16 35 H 0.01 0.33 8.06 -2.39 -0.02 0.31 16 36 H 0.26 14.66 8.31 -92.71 -0.77 13.89 16 Total: -1.00 -65.71 312.36 3.50 -62.21 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: 0.56 Total: 6.74 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: 4.92 Total: -8.60 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -2.08 Total: -91.74 kcal Atomic # 8 Polarization: -11.46 SS G_CDS: -1.93 Total: -13.40 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -65.71 3.50 -62.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131420569.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.567 kcal (2) G-P(sol) polarization free energy of solvation -65.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.646 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds