Wall clock time and date at job start Mon Mar 30 2020 04:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 119.99934 * 2 1 4 4 C 1.50702 * 109.46786 * 269.99970 * 3 2 1 5 5 H 1.08005 * 120.00263 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99780 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00402 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99909 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47049 * 59.99213 * 8 6 4 10 10 H 1.48499 * 109.47241 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46740 * 299.99423 * 8 6 4 12 12 C 1.34778 * 120.00364 * 179.97438 * 2 1 3 13 13 O 1.21277 * 120.00515 * 180.02562 * 12 2 1 14 14 C 1.50704 * 119.99486 * 359.97438 * 12 2 1 15 15 H 1.09004 * 110.46904 * 57.56527 * 14 12 2 16 16 C 1.53741 * 110.42625 * 295.11748 * 14 12 2 17 17 N 1.46534 * 105.18567 * 241.23399 * 16 14 12 18 18 C 1.39576 * 110.08962 * 0.02562 * 17 16 14 19 19 C 1.39671 * 129.32482 * 180.02562 * 18 17 16 20 20 C 1.37828 * 120.28316 * 179.97438 * 19 18 17 21 21 C 1.38305 * 120.22777 * 359.83172 * 20 19 18 22 22 C 1.38225 * 119.83591 * 0.40963 * 21 20 19 23 23 C 1.38171 * 120.15061 * 359.54566 * 22 21 20 24 24 H 1.09002 * 109.47267 * 270.00416 * 1 2 3 25 25 H 1.08996 * 109.47435 * 30.00222 * 1 2 3 26 26 H 1.09001 * 109.47441 * 150.00725 * 1 2 3 27 27 H 1.08994 * 109.47605 * 29.99956 * 3 2 1 28 28 H 1.09001 * 109.47464 * 150.00209 * 3 2 1 29 29 H 0.96993 * 120.00294 * 180.02562 * 7 6 4 30 30 H 1.09007 * 110.30033 * 122.30762 * 16 14 12 31 31 H 1.08997 * 110.30128 * 0.16496 * 16 14 12 32 32 H 0.97006 * 124.95641 * 180.02562 * 17 16 14 33 33 H 1.08000 * 119.85554 * 359.97438 * 19 18 17 34 34 H 1.07996 * 119.88424 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.07839 * 180.20882 * 21 20 19 36 36 H 1.08002 * 119.92750 * 179.83157 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0980 1.0957 -2.2418 6 6 3.1268 2.8774 -1.6728 7 7 3.5541 3.6176 -0.6733 8 14 3.4375 3.4170 -3.4341 9 1 2.1396 3.5952 -4.1335 10 1 4.1801 4.7030 -3.4342 11 1 4.2393 2.3818 -4.1347 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0017 15 1 0.7201 -2.5291 -0.8599 16 6 0.5880 -2.6303 1.3066 17 7 1.1294 -3.8335 1.9440 18 6 2.1430 -4.3794 1.1548 19 6 2.9235 -5.5159 1.3780 20 6 3.8839 -5.8901 0.4630 21 6 4.0796 -5.1445 -0.6854 22 6 3.3146 -4.0156 -0.9110 23 6 2.3499 -3.6369 0.0028 24 1 -0.3634 0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3634 -0.8900 -0.5137 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 4.0309 4.4434 -0.8506 30 1 -0.4719 -2.7622 1.0885 31 1 0.7375 -1.7623 1.9486 32 1 0.8276 -4.1975 2.7910 33 1 2.7739 -6.1040 2.2714 34 1 4.4836 -6.7703 0.6418 35 1 4.8306 -5.4419 -1.4024 36 1 3.4680 -3.4308 -1.8059 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134001442.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:32 Heat of formation + Delta-G solvation = 6.755358 kcal Electronic energy + Delta-G solvation = -19316.489482 eV Core-core repulsion = 16379.731835 eV Total energy + Delta-G solvation = -2936.757648 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.59623 -38.38300 -35.99732 -34.80367 -32.67766 -31.79223 -29.19453 -29.02696 -27.45141 -25.81687 -23.53477 -22.79891 -21.80092 -21.05995 -18.46405 -17.25553 -16.70831 -16.36963 -15.79328 -15.45522 -15.03859 -14.68369 -14.12788 -13.81493 -13.66994 -13.34709 -12.68559 -12.55337 -12.43029 -12.28143 -12.12366 -11.82917 -11.58158 -11.33277 -11.17316 -10.89366 -10.67549 -10.50922 -10.15306 -10.01909 -9.64063 -8.94231 -8.51328 -8.42555 -7.64378 -7.21540 -6.03568 -4.08485 1.64441 1.82396 3.32285 3.36319 3.37180 3.42311 3.44952 3.84399 4.20829 4.45832 4.68512 4.75907 5.08871 5.19170 5.23139 5.30599 5.39433 5.50775 5.62753 5.70979 5.76153 5.78733 5.88135 5.96290 6.19480 6.25803 6.51231 6.71632 6.85038 6.87948 7.05754 7.35621 7.44651 7.54022 7.88531 7.92694 8.23873 8.40973 8.90665 9.10379 9.56631 11.04520 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.027434 B = 0.005447 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.371803 B = 5138.782467 C = 5759.218404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.603 5.603 3 C 0.246 3.754 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 C 0.512 3.488 13 O -0.525 6.525 14 C -0.076 4.076 15 H 0.108 0.892 16 C 0.131 3.869 17 N -0.747 5.747 18 C 0.196 3.804 19 C -0.188 4.188 20 C -0.077 4.077 21 C -0.176 4.176 22 C -0.035 4.035 23 C -0.141 4.141 24 H 0.044 0.956 25 H 0.075 0.925 26 H 0.057 0.943 27 H 0.032 0.968 28 H 0.043 0.957 29 H 0.264 0.736 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.410 0.590 33 H 0.113 0.887 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.614 -15.753 3.684 17.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.336 5.336 3 C 0.127 3.873 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.202 1.202 12 C 0.297 3.703 13 O -0.401 6.401 14 C -0.098 4.098 15 H 0.126 0.874 16 C 0.006 3.994 17 N -0.381 5.381 18 C 0.093 3.907 19 C -0.211 4.211 20 C -0.096 4.096 21 C -0.196 4.196 22 C -0.054 4.054 23 C -0.146 4.146 24 H 0.063 0.937 25 H 0.094 0.906 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.073 0.927 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.248 0.752 33 H 0.131 0.869 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -6.978 -15.404 3.744 17.320 hybrid contribution -0.047 0.390 -0.594 0.712 sum -7.025 -15.014 3.150 16.873 Atomic orbital electron populations 1.21703 0.81623 1.02670 1.00331 1.48148 1.06060 1.07702 1.71642 1.19282 0.92527 0.77976 0.97509 1.21393 1.36617 1.06278 0.92263 0.92516 1.24935 0.95324 0.96388 0.97419 1.69918 1.38324 1.14367 1.30812 0.86560 0.78354 0.77836 0.84679 1.20255 1.21170 1.20160 1.19986 0.88056 0.84324 0.77892 1.90687 1.13615 1.86790 1.49028 1.20844 0.96707 0.93082 0.99158 0.87442 1.21749 0.96872 0.88046 0.92710 1.44636 1.39551 1.29431 1.24452 1.18318 0.89003 0.92973 0.90386 1.20201 1.00612 0.98278 1.02010 1.20699 0.96411 0.98840 0.93626 1.20794 1.02411 0.97296 0.99109 1.20361 0.92278 0.94688 0.98027 1.19357 1.01304 0.97134 0.96774 0.93750 0.90635 0.92473 0.95011 0.93895 0.92658 0.90902 0.91035 0.75215 0.86885 0.86338 0.86280 0.86230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.23 9.18 59.84 0.55 1.78 16 2 N -0.60 -12.71 2.86 -182.96 -0.52 -13.23 16 3 C 0.25 6.47 5.16 -5.19 -0.03 6.44 16 4 C -0.53 -14.98 9.39 -34.44 -0.32 -15.31 16 5 H 0.06 1.60 7.81 -52.48 -0.41 1.19 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -26.76 13.29 55.43 0.74 -26.02 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.51 10.86 6.83 -10.98 -0.07 10.79 16 13 O -0.53 -13.66 15.30 5.56 0.09 -13.58 16 14 C -0.08 -1.22 2.50 -92.28 -0.23 -1.45 16 15 H 0.11 1.50 7.31 -51.93 -0.38 1.12 16 16 C 0.13 1.66 6.28 -3.64 -0.02 1.64 16 17 N -0.75 -9.28 6.53 -58.12 -0.38 -9.66 16 18 C 0.20 2.91 7.03 -83.66 -0.59 2.32 16 19 C -0.19 -2.50 10.07 -39.20 -0.39 -2.89 16 20 C -0.08 -0.99 10.02 -39.71 -0.40 -1.39 16 21 C -0.18 -2.50 10.06 -39.56 -0.40 -2.89 16 22 C -0.03 -0.58 9.55 -39.61 -0.38 -0.95 16 23 C -0.14 -2.35 5.03 -104.26 -0.52 -2.88 16 24 H 0.04 0.56 7.75 -51.93 -0.40 0.16 16 25 H 0.07 1.19 8.07 -51.93 -0.42 0.77 16 26 H 0.06 0.70 6.24 -51.93 -0.32 0.38 16 27 H 0.03 0.84 8.07 -51.93 -0.42 0.42 16 28 H 0.04 1.28 7.42 -51.93 -0.39 0.90 16 29 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.07 0.96 7.12 -51.93 -0.37 0.59 16 32 H 0.41 3.89 8.96 -40.82 -0.37 3.52 16 33 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.12 1.42 8.06 -52.49 -0.42 1.00 16 36 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 LS Contribution 302.83 15.07 4.56 4.56 Total: -1.00 -34.38 302.83 -8.17 -42.56 By element: Atomic # 1 Polarization: 6.31 SS G_CDS: -4.72 Total: 1.58 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: -2.91 Total: -3.12 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: -0.17 Total: -48.91 kcal Atomic # 8 Polarization: -13.66 SS G_CDS: 0.09 Total: -13.58 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.38 -8.17 -42.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134001442.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.311 kcal (2) G-P(sol) polarization free energy of solvation -34.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.926 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.171 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds