Wall clock time and date at job start Mon Mar 30 2020 04:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46500 * 119.99934 * 2 1 4 4 C 1.50702 * 109.46786 * 269.99970 * 3 2 1 5 5 H 1.08005 * 120.00263 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99780 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00402 * 359.97438 * 6 4 3 8 8 Si 1.86807 * 119.99909 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.47049 * 59.99213 * 8 6 4 10 10 H 1.48499 * 109.47241 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46740 * 299.99423 * 8 6 4 12 12 C 1.34778 * 120.00364 * 179.97438 * 2 1 3 13 13 O 1.21277 * 120.00515 * 180.02562 * 12 2 1 14 14 C 1.50704 * 119.99486 * 359.97438 * 12 2 1 15 15 H 1.09004 * 110.46904 * 57.56527 * 14 12 2 16 16 C 1.53741 * 110.42625 * 295.11748 * 14 12 2 17 17 N 1.46534 * 105.18567 * 241.23399 * 16 14 12 18 18 C 1.39576 * 110.08962 * 0.02562 * 17 16 14 19 19 C 1.39671 * 129.32482 * 180.02562 * 18 17 16 20 20 C 1.37828 * 120.28316 * 179.97438 * 19 18 17 21 21 C 1.38305 * 120.22777 * 359.83172 * 20 19 18 22 22 C 1.38225 * 119.83591 * 0.40963 * 21 20 19 23 23 C 1.38171 * 120.15061 * 359.54566 * 22 21 20 24 24 H 1.09002 * 109.47267 * 270.00416 * 1 2 3 25 25 H 1.08996 * 109.47435 * 30.00222 * 1 2 3 26 26 H 1.09001 * 109.47441 * 150.00725 * 1 2 3 27 27 H 1.08994 * 109.47605 * 29.99956 * 3 2 1 28 28 H 1.09001 * 109.47464 * 150.00209 * 3 2 1 29 29 H 0.96993 * 120.00294 * 180.02562 * 7 6 4 30 30 H 1.09007 * 110.30033 * 122.30762 * 16 14 12 31 31 H 1.08997 * 110.30128 * 0.16496 * 16 14 12 32 32 H 0.97006 * 124.95641 * 180.02562 * 17 16 14 33 33 H 1.08000 * 119.85554 * 359.97438 * 19 18 17 34 34 H 1.07996 * 119.88424 * 180.02562 * 20 19 18 35 35 H 1.08002 * 120.07839 * 180.20882 * 21 20 19 36 36 H 1.08002 * 119.92750 * 179.83157 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0980 1.0957 -2.2418 6 6 3.1268 2.8774 -1.6728 7 7 3.5541 3.6176 -0.6733 8 14 3.4375 3.4170 -3.4341 9 1 2.1396 3.5952 -4.1335 10 1 4.1801 4.7030 -3.4342 11 1 4.2393 2.3818 -4.1347 12 6 2.1389 -1.1672 0.0005 13 8 3.3517 -1.1672 0.0010 14 6 1.3854 -2.4723 0.0017 15 1 0.7201 -2.5291 -0.8599 16 6 0.5880 -2.6303 1.3066 17 7 1.1294 -3.8335 1.9440 18 6 2.1430 -4.3794 1.1548 19 6 2.9235 -5.5159 1.3780 20 6 3.8839 -5.8901 0.4630 21 6 4.0796 -5.1445 -0.6854 22 6 3.3146 -4.0156 -0.9110 23 6 2.3499 -3.6369 0.0028 24 1 -0.3634 0.0001 1.0277 25 1 -0.3634 0.8899 -0.5138 26 1 -0.3634 -0.8900 -0.5137 27 1 1.6084 2.0284 0.5138 28 1 3.1499 1.1385 0.5138 29 1 4.0309 4.4434 -0.8506 30 1 -0.4719 -2.7622 1.0885 31 1 0.7375 -1.7623 1.9486 32 1 0.8276 -4.1975 2.7910 33 1 2.7739 -6.1040 2.2714 34 1 4.4836 -6.7703 0.6418 35 1 4.8306 -5.4419 -1.4024 36 1 3.4680 -3.4308 -1.8059 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134001442.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:32 Heat of formation + Delta-G solvation = -17.093608 kcal Electronic energy + Delta-G solvation = -19317.523651 eV Core-core repulsion = 16379.731835 eV Total energy + Delta-G solvation = -2937.791817 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.83235 -39.88076 -37.10016 -36.58144 -34.74355 -33.02850 -30.57979 -30.12146 -29.11977 -27.34933 -25.32631 -23.96439 -23.08148 -22.27729 -19.98553 -18.72381 -18.33627 -17.99757 -17.26195 -16.64570 -16.43522 -16.31157 -15.76803 -15.22905 -14.76142 -14.52145 -14.29225 -14.01921 -13.80631 -13.57069 -13.44430 -13.32651 -13.15360 -12.92185 -12.70851 -12.55048 -12.36281 -12.19067 -11.74922 -11.69493 -11.05468 -10.65068 -10.62594 -9.65149 -9.42377 -8.25041 -8.22868 -6.38179 0.53167 0.72935 1.35765 1.40316 1.47540 1.79672 2.29057 2.42481 2.50470 3.01497 3.06537 3.48708 3.63463 3.88459 4.06891 4.25329 4.30430 4.46584 4.56249 4.68249 4.70283 4.71968 4.72820 4.85569 4.98133 5.02463 5.17817 5.22389 5.45518 5.55024 5.63938 5.77665 5.79123 5.83785 6.05322 6.30472 6.68906 6.77460 7.02384 7.27441 7.47671 8.83832 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.027434 B = 0.005447 C = 0.004861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.371803 B = 5138.782467 C = 5759.218404 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.608 5.608 3 C 0.260 3.740 4 C -0.543 4.543 5 H 0.053 0.947 6 C 0.008 3.992 7 N -0.929 5.929 8 Si 0.967 3.033 9 H -0.258 1.258 10 H -0.278 1.278 11 H -0.279 1.279 12 C 0.504 3.496 13 O -0.588 6.588 14 C -0.067 4.067 15 H 0.130 0.870 16 C 0.135 3.865 17 N -0.738 5.738 18 C 0.188 3.812 19 C -0.190 4.190 20 C -0.074 4.074 21 C -0.186 4.186 22 C -0.063 4.063 23 C -0.177 4.177 24 H 0.076 0.924 25 H 0.067 0.933 26 H 0.094 0.906 27 H 0.026 0.974 28 H -0.007 1.007 29 H 0.267 0.733 30 H 0.118 0.882 31 H 0.063 0.937 32 H 0.426 0.574 33 H 0.143 0.857 34 H 0.153 0.847 35 H 0.135 0.865 36 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.426 -17.528 3.705 20.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.339 5.339 3 C 0.139 3.861 4 C -0.582 4.582 5 H 0.071 0.929 6 C -0.191 4.191 7 N -0.569 5.569 8 Si 0.791 3.209 9 H -0.183 1.183 10 H -0.203 1.203 11 H -0.205 1.205 12 C 0.292 3.708 13 O -0.468 6.468 14 C -0.088 4.088 15 H 0.148 0.852 16 C 0.010 3.990 17 N -0.373 5.373 18 C 0.084 3.916 19 C -0.213 4.213 20 C -0.092 4.092 21 C -0.206 4.206 22 C -0.082 4.082 23 C -0.182 4.182 24 H 0.094 0.906 25 H 0.086 0.914 26 H 0.112 0.888 27 H 0.044 0.956 28 H 0.011 0.989 29 H 0.076 0.924 30 H 0.136 0.864 31 H 0.081 0.919 32 H 0.266 0.734 33 H 0.160 0.840 34 H 0.171 0.829 35 H 0.153 0.847 36 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -8.869 -17.194 3.789 19.714 hybrid contribution 0.548 0.904 -0.542 1.189 sum -8.321 -16.289 3.247 18.577 Atomic orbital electron populations 1.22049 0.77732 1.04165 1.02875 1.48152 1.08468 1.06026 1.71253 1.18739 0.90980 0.80377 0.96013 1.21675 1.36959 1.06543 0.93018 0.92878 1.25866 0.94839 0.96416 1.02005 1.70041 1.38878 1.14815 1.33138 0.85475 0.78916 0.77324 0.79141 1.18258 1.20276 1.20488 1.21014 0.87744 0.85918 0.76154 1.90644 1.16593 1.87857 1.51709 1.20837 0.96709 0.89286 1.02008 0.85248 1.21838 0.98533 0.87959 0.90648 1.44609 1.38854 1.28980 1.24880 1.18541 0.89669 0.93379 0.90037 1.20619 0.99861 0.97852 1.02942 1.21126 0.96175 0.99335 0.92552 1.21064 1.02429 0.96828 1.00315 1.20465 0.93768 0.95888 0.98048 1.19576 1.02418 0.98122 0.98099 0.90589 0.91369 0.88772 0.95612 0.98869 0.92387 0.86386 0.91892 0.73355 0.83958 0.82934 0.84703 0.88265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.10 9.18 127.77 1.17 3.27 16 2 N -0.61 -25.98 2.86 -851.15 -2.43 -28.41 16 3 C 0.26 14.31 5.16 85.63 0.44 14.76 16 4 C -0.54 -31.83 9.39 25.60 0.24 -31.59 16 5 H 0.05 3.07 7.81 -2.91 -0.02 3.05 16 6 C 0.01 0.45 5.46 84.66 0.46 0.91 16 7 N -0.93 -57.03 13.29 21.45 0.28 -56.74 16 8 Si 0.97 45.45 29.54 68.60 2.03 47.48 16 9 H -0.26 -11.29 7.11 99.48 0.71 -10.59 16 10 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 C 0.50 21.87 6.83 87.66 0.60 22.47 16 13 O -0.59 -32.38 15.30 -3.02 -0.05 -32.43 16 14 C -0.07 -2.07 2.50 -11.87 -0.03 -2.10 16 15 H 0.13 3.33 7.31 -2.38 -0.02 3.31 16 16 C 0.13 3.02 6.28 86.62 0.54 3.56 16 17 N -0.74 -16.21 6.53 -337.80 -2.20 -18.42 16 18 C 0.19 5.23 7.03 38.34 0.27 5.50 16 19 C -0.19 -4.55 10.07 22.52 0.23 -4.32 16 20 C -0.07 -1.72 10.02 22.19 0.22 -1.50 16 21 C -0.19 -5.20 10.06 22.28 0.22 -4.98 16 22 C -0.06 -2.14 9.55 22.25 0.21 -1.93 16 23 C -0.18 -5.87 5.03 -19.63 -0.10 -5.97 16 24 H 0.08 1.71 7.75 -2.39 -0.02 1.69 16 25 H 0.07 2.06 8.07 -2.39 -0.02 2.04 16 26 H 0.09 1.98 6.24 -2.39 -0.01 1.97 16 27 H 0.03 1.42 8.07 -2.39 -0.02 1.40 16 28 H -0.01 -0.44 7.42 -2.39 -0.02 -0.46 16 29 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 30 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 31 H 0.06 1.54 7.12 -2.39 -0.02 1.53 16 32 H 0.43 6.60 8.96 -92.70 -0.83 5.77 16 33 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 34 H 0.15 2.47 8.06 -2.91 -0.02 2.44 16 35 H 0.14 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.10 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -79.57 302.83 2.37 -77.19 By element: Atomic # 1 Polarization: 12.98 SS G_CDS: 0.26 Total: 13.24 kcal Atomic # 6 Polarization: -6.40 SS G_CDS: 4.49 Total: -1.91 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -4.35 Total: -103.57 kcal Atomic # 8 Polarization: -32.38 SS G_CDS: -0.05 Total: -32.43 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -79.57 2.37 -77.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134001442.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.098 kcal (2) G-P(sol) polarization free energy of solvation -79.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.468 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.094 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds