Wall clock time and date at job start Mon Mar 30 2020 04:56:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99817 * 2 1 4 4 C 1.50699 * 109.46718 * 269.99974 * 3 2 1 5 5 H 1.08002 * 120.00090 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00040 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99696 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00395 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47117 * 90.00227 * 8 6 4 10 10 H 1.48499 * 109.47234 * 210.00290 * 8 6 4 11 11 H 1.48501 * 109.47067 * 330.00104 * 8 6 4 12 12 C 1.34774 * 120.00163 * 179.97438 * 2 1 3 13 13 O 1.21734 * 119.99751 * 180.02562 * 12 2 1 14 14 C 1.46198 * 120.00056 * 359.97438 * 12 2 1 15 15 C 1.35044 * 119.99900 * 179.97438 * 14 12 2 16 16 C 1.46924 * 119.99846 * 179.72755 * 15 14 12 17 17 C 1.40030 * 120.09144 * 359.73006 * 16 15 14 18 18 C 1.37105 * 119.89790 * 179.72029 * 17 16 15 19 19 C 1.39242 * 120.09698 * 0.57381 * 18 17 16 20 20 N 1.39112 * 119.90700 * 179.70167 * 19 18 17 21 21 C 1.39242 * 120.18701 * 359.67646 * 19 18 17 22 22 C 1.37103 * 120.09714 * 0.04335 * 21 19 18 23 23 H 1.09000 * 109.47193 * 270.00075 * 1 2 3 24 24 H 1.08998 * 109.47247 * 30.00589 * 1 2 3 25 25 H 1.09000 * 109.46889 * 150.00476 * 1 2 3 26 26 H 1.09003 * 109.47013 * 29.99733 * 3 2 1 27 27 H 1.08996 * 109.47410 * 149.99824 * 3 2 1 28 28 H 0.97005 * 120.00116 * 179.97438 * 7 6 4 29 29 H 1.07997 * 119.99715 * 359.73394 * 14 12 2 30 30 H 1.08000 * 119.99599 * 359.72861 * 15 14 12 31 31 H 1.07997 * 120.04740 * 359.97052 * 17 16 15 32 32 H 1.07999 * 119.94870 * 180.27780 * 18 17 16 33 33 H 0.97000 * 120.00344 * 179.97438 * 20 19 18 34 34 H 0.97005 * 120.00002 * 359.97409 * 20 19 18 35 35 H 1.07995 * 119.95243 * 180.02562 * 21 19 18 36 36 H 1.08003 * 120.04775 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0957 -2.2417 6 6 3.1258 2.8780 -1.6729 7 7 3.5531 3.6181 -0.6733 8 14 3.4378 3.4168 -3.4340 9 1 2.3076 4.2591 -3.9015 10 1 4.6977 4.2003 -3.4962 11 1 3.5560 2.2195 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3562 -1.1671 0.0010 14 6 1.4079 -2.4333 0.0017 15 6 2.0832 -3.6028 0.0017 16 6 1.3487 -4.8752 0.0088 17 6 -0.0516 -4.8775 0.0214 18 6 -0.7331 -6.0671 0.0223 19 6 -0.0349 -7.2718 0.0228 20 7 -0.7303 -8.4766 0.0299 21 6 1.3575 -7.2740 0.0156 22 6 2.0469 -6.0889 0.0089 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6083 2.0285 0.5138 27 1 3.1498 1.1386 0.5138 28 1 4.0300 4.4441 -0.8505 29 1 0.3280 -2.4333 0.0064 30 1 3.1632 -3.6027 -0.0036 31 1 -0.5938 -3.9435 0.0263 32 1 -1.8131 -6.0698 0.0274 33 1 -0.2453 -9.3166 0.0299 34 1 -1.7004 -8.4766 0.0350 35 1 1.8953 -8.2106 0.0155 36 1 3.1269 -6.0916 0.0029 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134723417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:21 Heat of formation + Delta-G solvation = 7.323285 kcal Electronic energy + Delta-G solvation = -18083.185437 eV Core-core repulsion = 15146.452416 eV Total energy + Delta-G solvation = -2936.733021 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.60028 -38.72055 -35.48092 -34.67361 -32.70675 -32.24695 -31.13009 -28.54722 -27.37003 -25.70642 -23.91265 -23.02852 -22.17697 -20.18896 -18.08445 -17.51904 -17.01727 -16.50726 -16.38743 -15.35239 -15.06847 -14.43166 -14.27266 -13.97063 -13.85431 -13.49616 -13.44943 -12.70230 -12.37189 -12.20317 -12.00582 -11.80310 -11.43009 -11.28364 -11.13567 -10.87300 -10.80828 -10.49375 -10.10390 -9.57697 -9.28778 -9.13601 -8.86942 -8.38154 -7.58898 -7.31836 -5.98564 -4.03103 0.85673 1.36238 2.33052 3.34090 3.40465 3.45779 3.57742 3.81402 4.09639 4.25096 4.50620 4.68041 4.82003 4.96002 5.25003 5.31511 5.35115 5.39522 5.54384 5.69277 5.80832 5.93301 6.01516 6.07176 6.24617 6.28963 6.33816 6.64368 6.69287 6.87602 7.18327 7.21767 7.41946 7.52482 7.63471 7.98584 8.30176 8.52867 8.97222 9.20875 9.61819 11.09414 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.039052 B = 0.003462 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.816011 B = 8085.146824 C = 8189.004032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.599 5.599 3 C 0.244 3.756 4 C -0.524 4.524 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.534 3.466 13 O -0.548 6.548 14 C -0.206 4.206 15 C -0.035 4.035 16 C -0.122 4.122 17 C -0.054 4.054 18 C -0.201 4.201 19 C 0.219 3.781 20 N -0.876 5.876 21 C -0.202 4.202 22 C -0.049 4.049 23 H 0.044 0.956 24 H 0.073 0.927 25 H 0.058 0.942 26 H 0.032 0.968 27 H 0.044 0.956 28 H 0.263 0.737 29 H 0.123 0.877 30 H 0.131 0.869 31 H 0.127 0.873 32 H 0.120 0.880 33 H 0.397 0.603 34 H 0.398 0.602 35 H 0.120 0.880 36 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.016 -21.880 2.433 24.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.330 5.330 3 C 0.125 3.875 4 C -0.563 4.563 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.323 3.677 13 O -0.429 6.429 14 C -0.227 4.227 15 C -0.055 4.055 16 C -0.125 4.125 17 C -0.072 4.072 18 C -0.224 4.224 19 C 0.114 3.886 20 N -0.414 5.414 21 C -0.225 4.225 22 C -0.068 4.068 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.077 0.923 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.141 0.859 30 H 0.149 0.851 31 H 0.145 0.855 32 H 0.138 0.862 33 H 0.225 0.775 34 H 0.226 0.774 35 H 0.138 0.862 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -10.274 -21.625 2.481 24.070 hybrid contribution -0.194 0.090 -0.997 1.020 sum -10.468 -21.536 1.484 23.991 Atomic orbital electron populations 1.21658 0.81556 1.02472 1.00345 1.48048 1.06125 1.07870 1.70932 1.19290 0.92616 0.78135 0.97471 1.21459 1.36364 1.06139 0.92353 0.92444 1.24944 0.95400 0.96423 0.97437 1.69939 1.38544 1.14337 1.30709 0.86489 0.77628 0.78564 0.84705 1.20674 1.21101 1.19867 1.18143 0.87454 0.84129 0.77973 1.90769 1.13644 1.87564 1.50888 1.23191 1.00104 0.93091 1.06313 1.22211 0.99995 0.90272 0.93021 1.18876 0.92981 0.92961 1.07636 1.21071 0.93409 0.97665 0.95083 1.20383 0.99434 0.91102 1.11439 1.17930 0.91484 0.86463 0.92767 1.42399 1.09022 1.05276 1.84706 1.20379 0.91921 0.98622 1.11560 1.21011 0.99758 0.91068 0.94914 0.93795 0.90863 0.92344 0.95013 0.93775 0.92764 0.85910 0.85116 0.85516 0.86157 0.77467 0.77445 0.86184 0.85530 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.40 10.14 59.85 0.61 2.01 16 2 N -0.60 -13.52 2.86 -184.69 -0.53 -14.04 16 3 C 0.24 6.67 5.16 -5.19 -0.03 6.64 16 4 C -0.52 -15.40 9.39 -34.44 -0.32 -15.72 16 5 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 6 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -27.27 13.29 55.43 0.74 -26.54 16 8 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 11 H -0.27 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.53 12.01 7.60 -13.07 -0.10 11.91 16 13 O -0.55 -14.67 15.81 5.16 0.08 -14.59 16 14 C -0.21 -3.47 8.60 -37.52 -0.32 -3.79 16 15 C -0.04 -0.54 9.45 -37.20 -0.35 -0.89 16 16 C -0.12 -1.57 5.87 -105.04 -0.62 -2.19 16 17 C -0.05 -0.61 9.38 -39.32 -0.37 -0.98 16 18 C -0.20 -1.96 9.85 -39.62 -0.39 -2.35 16 19 C 0.22 2.00 6.75 -83.81 -0.57 1.44 16 20 N -0.88 -5.10 9.06 32.43 0.29 -4.81 16 21 C -0.20 -1.95 9.85 -39.62 -0.39 -2.34 16 22 C -0.05 -0.54 9.76 -39.32 -0.38 -0.93 16 23 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 25 H 0.06 0.80 6.10 -51.93 -0.32 0.49 16 26 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 27 H 0.04 1.35 7.42 -51.93 -0.39 0.97 16 28 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 29 H 0.12 1.68 4.21 -52.49 -0.22 1.46 16 30 H 0.13 2.13 7.52 -52.49 -0.39 1.74 16 31 H 0.13 1.28 6.16 -52.49 -0.32 0.96 16 32 H 0.12 0.92 8.06 -52.49 -0.42 0.49 16 33 H 0.40 1.62 8.83 -40.82 -0.36 1.26 16 34 H 0.40 1.64 8.83 -40.82 -0.36 1.28 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.13 1.23 8.06 -52.48 -0.42 0.81 16 LS Contribution 312.78 15.07 4.71 4.71 Total: -1.00 -35.48 312.78 -7.49 -42.96 By element: Atomic # 1 Polarization: 4.92 SS G_CDS: -4.44 Total: 0.49 kcal Atomic # 6 Polarization: -2.21 SS G_CDS: -3.33 Total: -5.54 kcal Atomic # 7 Polarization: -45.89 SS G_CDS: 0.50 Total: -45.39 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: 0.08 Total: -14.59 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -35.48 -7.49 -42.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134723417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.288 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.964 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds