Wall clock time and date at job start Mon Mar 30 2020 04:56:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46507 * 119.99817 * 2 1 4 4 C 1.50699 * 109.46718 * 269.99974 * 3 2 1 5 5 H 1.08002 * 120.00090 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00040 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99696 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00395 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.47117 * 90.00227 * 8 6 4 10 10 H 1.48499 * 109.47234 * 210.00290 * 8 6 4 11 11 H 1.48501 * 109.47067 * 330.00104 * 8 6 4 12 12 C 1.34774 * 120.00163 * 179.97438 * 2 1 3 13 13 O 1.21734 * 119.99751 * 180.02562 * 12 2 1 14 14 C 1.46198 * 120.00056 * 359.97438 * 12 2 1 15 15 C 1.35044 * 119.99900 * 179.97438 * 14 12 2 16 16 C 1.46924 * 119.99846 * 179.72755 * 15 14 12 17 17 C 1.40030 * 120.09144 * 359.73006 * 16 15 14 18 18 C 1.37105 * 119.89790 * 179.72029 * 17 16 15 19 19 C 1.39242 * 120.09698 * 0.57381 * 18 17 16 20 20 N 1.39112 * 119.90700 * 179.70167 * 19 18 17 21 21 C 1.39242 * 120.18701 * 359.67646 * 19 18 17 22 22 C 1.37103 * 120.09714 * 0.04335 * 21 19 18 23 23 H 1.09000 * 109.47193 * 270.00075 * 1 2 3 24 24 H 1.08998 * 109.47247 * 30.00589 * 1 2 3 25 25 H 1.09000 * 109.46889 * 150.00476 * 1 2 3 26 26 H 1.09003 * 109.47013 * 29.99733 * 3 2 1 27 27 H 1.08996 * 109.47410 * 149.99824 * 3 2 1 28 28 H 0.97005 * 120.00116 * 179.97438 * 7 6 4 29 29 H 1.07997 * 119.99715 * 359.73394 * 14 12 2 30 30 H 1.08000 * 119.99599 * 359.72861 * 15 14 12 31 31 H 1.07997 * 120.04740 * 359.97052 * 17 16 15 32 32 H 1.07999 * 119.94870 * 180.27780 * 18 17 16 33 33 H 0.97000 * 120.00344 * 179.97438 * 20 19 18 34 34 H 0.97005 * 120.00002 * 359.97409 * 20 19 18 35 35 H 1.07995 * 119.95243 * 180.02562 * 21 19 18 36 36 H 1.08003 * 120.04775 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4486 1.7038 -1.4208 5 1 2.0980 1.0957 -2.2417 6 6 3.1258 2.8780 -1.6729 7 7 3.5531 3.6181 -0.6733 8 14 3.4378 3.4168 -3.4340 9 1 2.3076 4.2591 -3.9015 10 1 4.6977 4.2003 -3.4962 11 1 3.5560 2.2195 -4.3045 12 6 2.1389 -1.1672 0.0005 13 8 3.3562 -1.1671 0.0010 14 6 1.4079 -2.4333 0.0017 15 6 2.0832 -3.6028 0.0017 16 6 1.3487 -4.8752 0.0088 17 6 -0.0516 -4.8775 0.0214 18 6 -0.7331 -6.0671 0.0223 19 6 -0.0349 -7.2718 0.0228 20 7 -0.7303 -8.4766 0.0299 21 6 1.3575 -7.2740 0.0156 22 6 2.0469 -6.0889 0.0089 23 1 -0.3633 0.0000 1.0277 24 1 -0.3633 0.8899 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6083 2.0285 0.5138 27 1 3.1498 1.1386 0.5138 28 1 4.0300 4.4441 -0.8505 29 1 0.3280 -2.4333 0.0064 30 1 3.1632 -3.6027 -0.0036 31 1 -0.5938 -3.9435 0.0263 32 1 -1.8131 -6.0698 0.0274 33 1 -0.2453 -9.3166 0.0299 34 1 -1.7004 -8.4766 0.0350 35 1 1.8953 -8.2106 0.0155 36 1 3.1269 -6.0916 0.0029 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134723417.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:20 Heat of formation + Delta-G solvation = -17.257834 kcal Electronic energy + Delta-G solvation = -18084.251354 eV Core-core repulsion = 15146.452416 eV Total energy + Delta-G solvation = -2937.798938 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -40.69988 -40.13479 -36.67062 -36.19852 -34.73607 -33.44425 -31.90549 -30.18640 -28.71535 -27.29015 -25.56182 -24.02261 -23.39128 -21.43844 -19.49514 -18.70630 -18.51708 -17.88635 -17.53169 -16.98682 -16.27825 -16.14423 -15.93325 -15.05021 -14.83455 -14.40118 -14.32497 -14.19473 -14.09806 -13.75664 -13.46335 -13.33432 -12.96366 -12.77856 -12.53566 -12.45476 -12.20360 -12.15091 -11.72863 -11.69796 -10.66038 -10.64249 -10.34683 -9.91336 -9.39891 -8.24508 -8.13795 -6.37804 -0.20649 0.60109 1.22769 1.36191 1.39794 1.50630 2.31871 2.51517 2.54458 3.03362 3.06438 3.10185 3.77153 3.87012 4.12126 4.24134 4.26720 4.49285 4.52825 4.61673 4.73740 4.88435 4.94452 4.98844 5.15654 5.19859 5.22285 5.35811 5.42743 5.56343 5.64296 5.86117 5.87710 5.93942 6.06430 6.58953 6.70086 6.81971 6.99846 7.27941 7.50741 8.84885 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.039052 B = 0.003462 C = 0.003418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.816011 B = 8085.146824 C = 8189.004032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.078 3.922 2 N -0.608 5.608 3 C 0.258 3.742 4 C -0.544 4.544 5 H 0.052 0.948 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.972 3.028 9 H -0.261 1.261 10 H -0.279 1.279 11 H -0.274 1.274 12 C 0.524 3.476 13 O -0.612 6.612 14 C -0.231 4.231 15 C -0.005 4.005 16 C -0.159 4.159 17 C -0.051 4.051 18 C -0.210 4.210 19 C 0.230 3.770 20 N -0.859 5.859 21 C -0.212 4.212 22 C -0.051 4.051 23 H 0.071 0.929 24 H 0.067 0.933 25 H 0.094 0.906 26 H 0.026 0.974 27 H -0.004 1.004 28 H 0.268 0.732 29 H 0.160 0.840 30 H 0.110 0.890 31 H 0.138 0.862 32 H 0.145 0.855 33 H 0.409 0.591 34 H 0.409 0.591 35 H 0.142 0.858 36 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 -24.404 1.402 27.919 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.338 5.338 3 C 0.136 3.864 4 C -0.583 4.583 5 H 0.070 0.930 6 C -0.193 4.193 7 N -0.569 5.569 8 Si 0.795 3.205 9 H -0.185 1.185 10 H -0.204 1.204 11 H -0.199 1.199 12 C 0.316 3.684 13 O -0.496 6.496 14 C -0.251 4.251 15 C -0.025 4.025 16 C -0.161 4.161 17 C -0.070 4.070 18 C -0.233 4.233 19 C 0.122 3.878 20 N -0.397 5.397 21 C -0.234 4.234 22 C -0.070 4.070 23 H 0.089 0.911 24 H 0.086 0.914 25 H 0.112 0.888 26 H 0.044 0.956 27 H 0.014 0.986 28 H 0.077 0.923 29 H 0.177 0.823 30 H 0.128 0.872 31 H 0.156 0.844 32 H 0.163 0.837 33 H 0.238 0.762 34 H 0.239 0.761 35 H 0.160 0.840 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -12.831 -24.198 1.459 27.428 hybrid contribution 0.526 0.594 -0.611 1.001 sum -12.305 -23.604 0.848 26.632 Atomic orbital electron populations 1.21967 0.77818 1.03974 1.02600 1.48072 1.08496 1.06324 1.70879 1.18775 0.91092 0.80363 0.96158 1.21707 1.37055 1.06580 0.92941 0.93001 1.25911 0.94770 0.96332 1.02299 1.70061 1.38923 1.14798 1.33138 0.85359 0.78204 0.78170 0.78730 1.18534 1.20432 1.19870 1.19073 0.87106 0.85737 0.76451 1.90716 1.16444 1.88518 1.53960 1.22888 1.01252 0.90204 1.10785 1.22317 0.99288 0.91513 0.89353 1.18773 0.93837 0.91884 1.11648 1.21249 0.92699 0.98959 0.94076 1.20657 1.00733 0.90649 1.11238 1.18118 0.91571 0.87478 0.90637 1.42441 1.09823 1.04772 1.82654 1.20621 0.92457 0.98892 1.11479 1.21189 1.00322 0.91265 0.94207 0.91094 0.91392 0.88781 0.95643 0.98570 0.92320 0.82329 0.87169 0.84440 0.83726 0.76151 0.76086 0.83979 0.85056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.54 10.14 127.77 1.30 3.84 16 2 N -0.61 -28.35 2.86 -856.44 -2.45 -30.79 16 3 C 0.26 14.86 5.16 85.63 0.44 15.30 16 4 C -0.54 -33.09 9.39 25.60 0.24 -32.85 16 5 H 0.05 3.13 7.81 -2.91 -0.02 3.11 16 6 C 0.01 0.34 5.46 84.65 0.46 0.80 16 7 N -0.93 -58.15 13.29 21.45 0.28 -57.87 16 8 Si 0.97 46.44 29.54 68.60 2.03 48.47 16 9 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 10 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 11 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 12 C 0.52 24.60 7.60 86.31 0.66 25.26 16 13 O -0.61 -35.07 15.81 -4.46 -0.07 -35.14 16 14 C -0.23 -7.78 8.60 23.60 0.20 -7.58 16 15 C 0.00 -0.14 9.45 23.81 0.23 0.08 16 16 C -0.16 -3.88 5.87 -20.13 -0.12 -4.00 16 17 C -0.05 -1.03 9.38 22.44 0.21 -0.82 16 18 C -0.21 -3.33 9.85 22.24 0.22 -3.11 16 19 C 0.23 3.36 6.75 38.47 0.26 3.62 16 20 N -0.86 -6.34 9.06 -51.31 -0.46 -6.81 16 21 C -0.21 -3.47 9.85 22.24 0.22 -3.25 16 22 C -0.05 -1.07 9.76 22.44 0.22 -0.85 16 23 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 24 H 0.07 2.27 8.07 -2.39 -0.02 2.25 16 25 H 0.09 2.36 6.10 -2.39 -0.01 2.35 16 26 H 0.03 1.47 8.07 -2.39 -0.02 1.45 16 27 H 0.00 -0.25 7.42 -2.39 -0.02 -0.27 16 28 H 0.27 15.61 8.31 -92.70 -0.77 14.84 16 29 H 0.16 4.01 4.21 -2.91 -0.01 4.00 16 30 H 0.11 3.83 7.52 -2.91 -0.02 3.81 16 31 H 0.14 2.35 6.16 -2.91 -0.02 2.34 16 32 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 33 H 0.41 1.59 8.83 -92.71 -0.82 0.78 16 34 H 0.41 1.55 8.83 -92.70 -0.82 0.73 16 35 H 0.14 1.64 8.06 -2.91 -0.02 1.61 16 36 H 0.13 2.48 8.06 -2.91 -0.02 2.46 16 Total: -1.00 -81.59 312.78 3.34 -78.25 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -0.52 Total: 7.45 kcal Atomic # 6 Polarization: -8.09 SS G_CDS: 4.53 Total: -3.56 kcal Atomic # 7 Polarization: -92.84 SS G_CDS: -2.63 Total: -95.47 kcal Atomic # 8 Polarization: -35.07 SS G_CDS: -0.07 Total: -35.14 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -81.59 3.34 -78.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134723417.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.988 kcal (2) G-P(sol) polarization free energy of solvation -81.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds