Wall clock time and date at job start Mon Mar 30 2020 05:07:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46903 * 111.00350 * 2 1 4 4 H 1.09000 * 109.46649 * 325.00047 * 3 2 1 5 5 C 1.52993 * 109.46888 * 84.99910 * 3 2 1 6 6 C 1.50703 * 109.46799 * 205.00362 * 3 2 1 7 7 C 1.38317 * 119.51450 * 155.02427 * 6 3 2 8 8 C 1.38447 * 119.25393 * 179.67381 * 7 6 3 9 9 C 1.39491 * 118.34309 * 0.56002 * 8 7 6 10 10 N 1.39320 * 120.50367 * 179.73457 * 9 8 7 11 11 C 1.36845 * 119.99621 * 179.71955 * 10 9 8 12 12 H 1.08001 * 120.00254 * 339.72722 * 11 10 9 13 13 C 1.38795 * 119.99976 * 159.44332 * 11 10 9 14 14 N 1.31585 * 120.00101 * 340.11978 * 13 11 10 15 15 Si 1.86807 * 119.99992 * 160.11221 * 13 11 10 16 16 H 1.48501 * 109.46868 * 94.48202 * 15 13 11 17 17 H 1.48491 * 109.47313 * 214.48269 * 15 13 11 18 18 H 1.48501 * 109.46907 * 334.48786 * 15 13 11 19 19 C 1.46498 * 120.00556 * 359.72391 * 10 9 8 20 20 C 1.47198 * 109.46601 * 275.88099 * 19 10 9 21 21 N 8.07986 * 132.62771 * 296.49900 * 2 1 3 22 22 C 1.39061 * 118.98117 * 359.46089 * 9 8 7 23 23 N 1.31774 * 120.63820 * 0.25068 * 22 9 8 24 24 H 1.08998 * 109.47526 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.46882 * 300.00162 * 1 2 3 26 26 H 1.09004 * 109.47191 * 59.99621 * 1 2 3 27 27 H 1.00909 * 110.99913 * 236.04615 * 2 1 3 28 28 H 1.09000 * 109.47363 * 60.00575 * 5 3 2 29 29 H 1.09001 * 109.46792 * 179.97438 * 5 3 2 30 30 H 1.08996 * 109.47247 * 300.00191 * 5 3 2 31 31 H 1.08003 * 120.37456 * 359.97438 * 7 6 3 32 32 H 1.08000 * 120.82736 * 180.28989 * 8 7 6 33 33 H 0.96999 * 120.00284 * 179.97438 * 14 13 11 34 34 H 1.08995 * 109.46781 * 35.87842 * 19 10 9 35 35 H 1.09004 * 109.47158 * 155.88298 * 19 10 9 36 36 H 1.08000 * 119.67656 * 180.27613 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 1 1.3398 2.0123 -0.5895 5 6 2.0609 1.8925 1.4370 6 6 3.3777 1.3788 -0.6006 7 6 3.8631 2.5376 -1.1790 8 6 5.1362 2.5402 -1.7231 9 6 5.8791 1.3606 -1.6757 10 7 7.1629 1.3112 -2.2145 11 6 7.8847 0.1500 -2.1572 12 1 7.6266 -0.6114 -1.4359 13 6 8.9449 -0.0519 -3.0299 14 7 9.0260 0.6497 -4.1401 15 14 10.2570 -1.3195 -2.6282 16 1 9.9187 -2.6074 -3.2856 17 1 11.5737 -0.8426 -3.1220 18 1 10.3214 -1.5163 -1.1577 19 6 7.7403 2.5022 -2.8424 20 6 7.2891 2.5870 -4.2409 21 7 6.9409 2.6525 -5.3204 22 6 5.3208 0.2363 -1.0772 23 7 4.1069 0.2804 -0.5664 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5139 -0.8900 27 1 1.8306 -0.5262 -0.7814 28 1 2.7166 1.2517 2.0264 29 1 2.4520 2.9100 1.4370 30 1 1.0612 1.8871 1.8713 31 1 3.2578 3.4317 -1.2017 32 1 5.5423 3.4322 -2.1768 33 1 9.7671 0.5089 -4.7499 34 1 7.4161 3.3912 -2.3015 35 1 8.8280 2.4364 -2.8148 36 1 5.8878 -0.6817 -1.0303 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148139748.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:06 Heat of formation + Delta-G solvation = 66.366865 kcal Electronic energy + Delta-G solvation = -18982.995935 eV Core-core repulsion = 16081.115988 eV Total energy + Delta-G solvation = -2901.879948 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.09265 -38.88179 -37.18316 -36.39927 -34.11003 -32.83598 -31.80352 -30.20577 -28.85427 -26.64427 -25.54371 -24.20165 -23.02072 -21.26832 -19.69290 -18.72579 -18.16213 -17.34116 -16.89783 -16.17447 -15.94653 -15.46315 -15.22245 -14.91045 -14.76582 -14.54781 -14.19153 -13.98956 -13.69037 -13.44563 -13.31210 -13.18470 -12.98375 -12.80689 -12.67065 -12.43336 -12.19301 -12.15686 -11.95764 -11.71863 -11.61698 -10.63166 -10.18092 -10.03038 -9.21893 -8.62337 -8.33266 -5.77203 0.61431 0.78350 1.48526 1.50631 1.61138 1.92938 2.24744 2.35957 2.89743 3.16787 3.25133 3.40484 3.62607 3.76399 4.07939 4.29661 4.36693 4.51555 4.54675 4.60872 4.64918 4.76652 4.78886 4.86180 5.00559 5.01700 5.09730 5.14268 5.39449 5.47737 5.50514 5.54867 5.77522 6.15897 6.29809 6.54791 6.62616 7.02098 7.25751 7.54900 7.57688 8.64036 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.025231 B = 0.005398 C = 0.004810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.465281 B = 5185.382414 C = 5819.741979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.694 5.694 3 C 0.153 3.847 4 H 0.060 0.940 5 C -0.125 4.125 6 C -0.004 4.004 7 C -0.103 4.103 8 C -0.197 4.197 9 C 0.149 3.851 10 N -0.454 5.454 11 C -0.324 4.324 12 H 0.104 0.896 13 C -0.005 4.005 14 N -0.900 5.900 15 Si 0.987 3.013 16 H -0.288 1.288 17 H -0.281 1.281 18 H -0.258 1.258 19 C 0.234 3.766 20 C 0.260 3.740 21 N -0.516 5.516 22 C -0.005 4.005 23 N -0.437 5.437 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.021 0.979 27 H 0.341 0.659 28 H 0.041 0.959 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.150 0.850 32 H 0.136 0.864 33 H 0.270 0.730 34 H 0.125 0.875 35 H 0.119 0.881 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.917 4.406 8.667 12.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.325 5.325 3 C 0.043 3.957 4 H 0.077 0.923 5 C -0.183 4.183 6 C -0.145 4.145 7 C -0.124 4.124 8 C -0.228 4.228 9 C 0.034 3.966 10 N -0.144 5.144 11 C -0.452 4.452 12 H 0.121 0.879 13 C -0.207 4.207 14 N -0.537 5.537 15 Si 0.812 3.188 16 H -0.214 1.214 17 H -0.206 1.206 18 H -0.182 1.182 19 C 0.107 3.893 20 C -0.058 4.058 21 N -0.197 5.197 22 C -0.171 4.171 23 N -0.145 5.145 24 H 0.090 0.910 25 H 0.090 0.910 26 H 0.040 0.960 27 H 0.159 0.841 28 H 0.060 0.940 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.167 0.833 32 H 0.154 0.846 33 H 0.080 0.920 34 H 0.142 0.858 35 H 0.137 0.863 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.313 3.687 7.871 12.028 hybrid contribution 1.326 0.055 -1.370 1.908 sum -6.988 3.742 6.501 10.251 Atomic orbital electron populations 1.22313 0.87123 1.02247 1.00526 1.60345 1.07842 1.13544 1.50787 1.20195 0.89128 0.89896 0.96500 0.92271 1.21700 1.01896 1.00186 0.94541 1.20974 0.97998 0.90398 1.05148 1.21701 0.95176 0.99132 0.96383 1.21077 0.96186 0.97373 1.08123 1.19253 0.85417 0.95678 0.96212 1.42500 1.10028 1.09830 1.52028 1.19827 1.10910 0.97186 1.17230 0.87872 1.25930 1.01053 1.00291 0.93401 1.69993 1.31586 1.43274 1.08837 0.84988 0.77393 0.77406 0.79058 1.21409 1.20628 1.18229 1.18879 1.00673 0.89440 0.80353 1.29970 0.90364 0.89801 0.95676 1.80873 1.12785 1.12031 1.14007 1.22067 0.93099 0.97750 1.04200 1.67065 1.05037 1.28839 1.13593 0.91010 0.90981 0.96002 0.84082 0.93971 0.91602 0.91379 0.83262 0.84638 0.91966 0.85785 0.86285 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.50 127.69 1.34 1.90 16 2 N -0.69 -19.25 6.40 -518.53 -3.32 -22.57 16 3 C 0.15 4.15 2.86 44.17 0.13 4.28 16 4 H 0.06 1.42 7.77 -2.39 -0.02 1.40 16 5 C -0.12 -2.98 9.40 71.98 0.68 -2.31 16 6 C 0.00 -0.14 5.71 42.57 0.24 0.10 16 7 C -0.10 -3.21 9.75 22.34 0.22 -3.00 16 8 C -0.20 -6.85 9.22 22.62 0.21 -6.64 16 9 C 0.15 6.08 6.49 38.45 0.25 6.33 16 10 N -0.45 -19.41 2.70 -521.32 -1.41 -20.81 16 11 C -0.32 -14.91 9.08 84.04 0.76 -14.15 16 12 H 0.10 4.68 6.14 -2.91 -0.02 4.66 16 13 C -0.01 -0.24 4.88 84.86 0.41 0.17 16 14 N -0.90 -44.09 9.48 21.65 0.21 -43.89 16 15 Si 0.99 37.85 29.60 68.60 2.03 39.88 16 16 H -0.29 -11.43 7.11 99.48 0.71 -10.72 16 17 H -0.28 -10.68 7.11 99.48 0.71 -9.98 16 18 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 19 C 0.23 8.90 4.81 84.57 0.41 9.30 16 20 C 0.26 11.40 13.30 89.44 1.19 12.59 16 21 N -0.52 -24.92 18.54 20.01 0.37 -24.55 16 22 C -0.01 -0.22 10.45 84.90 0.89 0.66 16 23 N -0.44 -17.04 9.27 -183.18 -1.70 -18.73 16 24 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 25 H 0.07 1.31 7.44 -2.38 -0.02 1.29 16 26 H 0.02 0.42 8.06 -2.38 -0.02 0.40 16 27 H 0.34 10.54 7.93 -89.69 -0.71 9.83 16 28 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.07 1.36 7.45 -2.39 -0.02 1.34 16 31 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 32 H 0.14 4.15 6.32 -2.91 -0.02 4.14 16 33 H 0.27 13.03 8.31 -92.71 -0.77 12.26 16 34 H 0.12 3.61 6.57 -2.39 -0.02 3.60 16 35 H 0.12 4.66 6.61 -2.39 -0.02 4.64 16 36 H 0.14 5.92 6.15 -2.91 -0.02 5.90 16 Total: -1.00 -57.34 304.96 3.30 -54.04 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.40 Total: 27.38 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 6.72 Total: 9.25 kcal Atomic # 7 Polarization: -124.70 SS G_CDS: -5.85 Total: -130.55 kcal Atomic # 14 Polarization: 37.85 SS G_CDS: 2.03 Total: 39.88 kcal Total: -57.34 3.30 -54.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148139748.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.405 kcal (2) G-P(sol) polarization free energy of solvation -57.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.367 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds