Wall clock time and date at job start Mon Mar 30 2020 05:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46893 * 1 3 3 C 1.46899 * 111.00068 * 2 1 4 4 H 1.09003 * 109.46818 * 35.00075 * 3 2 1 5 5 C 1.52995 * 109.47247 * 274.99505 * 3 2 1 6 6 C 1.50702 * 109.47183 * 154.99613 * 3 2 1 7 7 C 1.38313 * 119.52221 * 205.00037 * 6 3 2 8 8 C 1.38440 * 119.25922 * 179.97438 * 7 6 3 9 9 C 1.39490 * 118.34327 * 359.97438 * 8 7 6 10 10 N 1.39325 * 120.50632 * 180.02562 * 9 8 7 11 11 C 1.36840 * 119.99826 * 179.97438 * 10 9 8 12 12 H 1.08004 * 120.00276 * 24.25350 * 11 10 9 13 13 C 1.38800 * 119.99763 * 204.25747 * 11 10 9 14 14 N 1.31586 * 119.99935 * 15.87192 * 13 11 10 15 15 Si 1.86799 * 120.00063 * 195.86620 * 13 11 10 16 16 H 1.48500 * 109.46970 * 90.00076 * 15 13 11 17 17 H 1.48501 * 109.47236 * 210.00193 * 15 13 11 18 18 H 1.48499 * 109.47281 * 330.00126 * 15 13 11 19 19 C 1.46497 * 120.00283 * 359.97250 * 10 9 8 20 20 C 1.47202 * 109.46601 * 83.76125 * 19 10 9 21 21 N 8.06983 * 132.52580 * 63.43679 * 2 1 3 22 22 C 1.39051 * 118.98604 * 0.02562 * 9 8 7 23 23 N 1.31778 * 120.63539 * 359.97438 * 22 9 8 24 24 H 1.09004 * 109.47371 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47661 * 300.00084 * 1 2 3 26 26 H 1.09004 * 109.46971 * 60.00193 * 1 2 3 27 27 H 1.00907 * 110.99915 * 123.95505 * 2 1 3 28 28 H 1.09007 * 109.46809 * 59.99992 * 5 3 2 29 29 H 1.09000 * 109.47375 * 179.97438 * 5 3 2 30 30 H 1.08998 * 109.47215 * 300.00147 * 5 3 2 31 31 H 1.08002 * 120.36914 * 359.70728 * 7 6 3 32 32 H 1.08001 * 120.83059 * 179.97438 * 8 7 6 33 33 H 0.97009 * 119.99972 * 180.02562 * 14 13 11 34 34 H 1.08991 * 109.47754 * 203.75955 * 19 10 9 35 35 H 1.08999 * 109.47275 * 323.76625 * 19 10 9 36 36 H 1.08002 * 119.68282 * 179.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 1 1.3397 2.0123 0.5895 5 6 2.0609 1.8926 -1.4370 6 6 3.3776 1.3789 0.6006 7 6 3.8628 2.5376 1.1794 8 6 5.1331 2.5382 1.7300 9 6 5.8778 1.3599 1.6784 10 7 7.1609 1.3099 2.2190 11 6 7.8821 0.1483 2.1631 12 1 7.6662 -0.5853 1.4004 13 6 8.8911 -0.0871 3.0867 14 7 8.9566 0.6314 4.1871 15 14 10.1560 -1.4241 2.7675 16 1 11.3080 -0.8492 2.0275 17 1 10.6266 -1.9795 4.0619 18 1 9.5391 -2.5066 1.9595 19 6 7.7380 2.5009 2.8473 20 6 7.2781 2.5910 4.2427 21 7 6.9235 2.6595 5.3195 22 6 5.3200 0.2359 1.0791 23 7 4.1065 0.2802 0.5674 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 1.8305 -0.5262 0.7814 28 1 1.0611 1.8871 -1.8713 29 1 2.4511 2.9103 -1.4369 30 1 2.7166 1.2517 -2.0264 31 1 3.2592 3.4330 1.1979 32 1 5.5373 3.4288 2.1880 33 1 9.6621 0.4671 4.8324 34 1 8.8255 2.4316 2.8270 35 1 7.4202 3.3895 2.3019 36 1 5.8869 -0.6822 1.0325 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000148139949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:08 Heat of formation + Delta-G solvation = 65.231132 kcal Electronic energy + Delta-G solvation = -18991.030200 eV Core-core repulsion = 16089.101003 eV Total energy + Delta-G solvation = -2901.929197 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.09524 -38.87197 -37.17975 -36.38369 -34.09682 -32.83790 -31.80638 -30.19806 -28.84800 -26.64175 -25.54147 -24.20079 -23.02643 -21.27035 -19.67617 -18.71925 -18.15740 -17.34957 -16.90497 -16.16722 -15.93893 -15.45317 -15.22607 -14.91160 -14.76463 -14.54086 -14.18723 -13.96927 -13.68782 -13.44447 -13.30083 -13.15761 -12.97390 -12.82767 -12.67758 -12.44569 -12.17884 -12.16547 -11.97469 -11.73327 -11.55744 -10.64961 -10.18239 -10.03553 -9.22057 -8.60055 -8.31449 -5.81508 0.61240 0.78259 1.49905 1.50177 1.58985 1.94754 2.26637 2.36739 2.91651 3.17803 3.25571 3.40377 3.63542 3.76032 4.07834 4.29997 4.36574 4.51359 4.55961 4.60714 4.64911 4.76590 4.78826 4.86474 5.00560 5.01570 5.09689 5.14113 5.39109 5.47530 5.49981 5.54564 5.79420 6.16283 6.29565 6.54578 6.63524 7.04863 7.25663 7.55472 7.57532 8.65359 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.025098 B = 0.005422 C = 0.004827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1115.371587 B = 5162.826055 C = 5799.395149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.694 5.694 3 C 0.153 3.847 4 H 0.060 0.940 5 C -0.125 4.125 6 C -0.003 4.003 7 C -0.104 4.104 8 C -0.196 4.196 9 C 0.151 3.849 10 N -0.455 5.455 11 C -0.322 4.322 12 H 0.103 0.897 13 C -0.006 4.006 14 N -0.902 5.902 15 Si 0.989 3.011 16 H -0.267 1.267 17 H -0.295 1.295 18 H -0.266 1.266 19 C 0.235 3.765 20 C 0.261 3.739 21 N -0.518 5.518 22 C -0.004 4.004 23 N -0.438 5.438 24 H 0.071 0.929 25 H 0.021 0.979 26 H 0.072 0.928 27 H 0.341 0.659 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.041 0.959 31 H 0.150 0.850 32 H 0.136 0.864 33 H 0.269 0.731 34 H 0.118 0.882 35 H 0.124 0.876 36 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.931 4.325 -8.746 12.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.325 5.325 3 C 0.043 3.957 4 H 0.077 0.923 5 C -0.183 4.183 6 C -0.144 4.144 7 C -0.124 4.124 8 C -0.227 4.227 9 C 0.036 3.964 10 N -0.146 5.146 11 C -0.449 4.449 12 H 0.120 0.880 13 C -0.207 4.207 14 N -0.540 5.540 15 Si 0.814 3.186 16 H -0.192 1.192 17 H -0.222 1.222 18 H -0.190 1.190 19 C 0.108 3.892 20 C -0.057 4.057 21 N -0.199 5.199 22 C -0.169 4.169 23 N -0.146 5.146 24 H 0.090 0.910 25 H 0.040 0.960 26 H 0.090 0.910 27 H 0.159 0.841 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.060 0.940 31 H 0.168 0.832 32 H 0.153 0.847 33 H 0.079 0.921 34 H 0.136 0.864 35 H 0.141 0.859 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.352 3.599 -7.950 12.080 hybrid contribution 1.327 0.044 1.394 1.925 sum -7.025 3.643 -6.557 10.277 Atomic orbital electron populations 1.22312 0.87115 1.02249 1.00531 1.60342 1.07850 1.13532 1.50790 1.20199 0.89113 0.89911 0.96520 0.92250 1.21701 1.01915 1.00188 0.94522 1.20988 0.97982 0.90372 1.05011 1.21703 0.95222 0.99149 0.96366 1.21086 0.96199 0.97444 1.07944 1.19277 0.85463 0.95622 0.96003 1.42448 1.10014 1.09814 1.52325 1.19805 1.13865 0.97909 1.13360 0.87990 1.25983 1.00900 1.00436 0.93386 1.69926 1.33285 1.42514 1.08263 0.84951 0.78440 0.78207 0.77012 1.19185 1.22195 1.19030 1.18840 1.00461 0.89429 0.80475 1.29920 0.90398 0.89705 0.95651 1.80850 1.12800 1.12203 1.13999 1.22074 0.93078 0.97740 1.04034 1.67077 1.05051 1.28831 1.13639 0.91012 0.96009 0.90965 0.84081 0.91377 0.91588 0.93953 0.83236 0.84653 0.92064 0.86423 0.85898 0.84373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.56 10.50 127.69 1.34 1.90 16 2 N -0.69 -19.23 6.40 -518.54 -3.32 -22.55 16 3 C 0.15 4.14 2.86 44.17 0.13 4.26 16 4 H 0.06 1.43 7.77 -2.39 -0.02 1.41 16 5 C -0.12 -2.97 9.40 71.98 0.68 -2.30 16 6 C 0.00 -0.09 5.71 42.57 0.24 0.16 16 7 C -0.10 -3.23 9.75 22.34 0.22 -3.01 16 8 C -0.20 -6.82 9.20 22.62 0.21 -6.62 16 9 C 0.15 6.15 6.48 38.45 0.25 6.39 16 10 N -0.46 -19.49 2.69 -521.33 -1.40 -20.90 16 11 C -0.32 -14.80 8.99 84.05 0.76 -14.04 16 12 H 0.10 4.62 6.25 -2.91 -0.02 4.60 16 13 C -0.01 -0.27 4.95 84.86 0.42 0.15 16 14 N -0.90 -44.48 9.40 21.65 0.20 -44.28 16 15 Si 0.99 38.11 29.58 68.60 2.03 40.14 16 16 H -0.27 -9.83 7.11 99.48 0.71 -9.12 16 17 H -0.30 -11.87 7.11 99.48 0.71 -11.16 16 18 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 19 C 0.24 8.96 4.81 84.57 0.41 9.37 16 20 C 0.26 11.49 13.13 89.45 1.17 12.66 16 21 N -0.52 -25.07 18.54 20.00 0.37 -24.70 16 22 C 0.00 -0.15 10.44 84.90 0.89 0.74 16 23 N -0.44 -17.05 9.27 -183.19 -1.70 -18.75 16 24 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 25 H 0.02 0.42 8.05 -2.39 -0.02 0.40 16 26 H 0.07 1.31 7.44 -2.38 -0.02 1.30 16 27 H 0.34 10.54 7.93 -89.69 -0.71 9.83 16 28 H 0.07 1.35 7.45 -2.38 -0.02 1.33 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.15 3.55 8.06 -2.91 -0.02 3.52 16 32 H 0.14 4.17 6.32 -2.91 -0.02 4.15 16 33 H 0.27 13.14 8.31 -92.70 -0.77 12.37 16 34 H 0.12 4.61 6.74 -2.39 -0.02 4.59 16 35 H 0.12 3.59 6.60 -2.39 -0.02 3.57 16 36 H 0.14 5.94 6.21 -2.91 -0.02 5.92 16 Total: -1.00 -57.43 304.97 3.28 -54.14 By element: Atomic # 1 Polarization: 26.81 SS G_CDS: 0.40 Total: 27.21 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: 6.70 Total: 9.67 kcal Atomic # 7 Polarization: -125.32 SS G_CDS: -5.85 Total: -131.17 kcal Atomic # 14 Polarization: 38.11 SS G_CDS: 2.03 Total: 40.14 kcal Total: -57.43 3.28 -54.14 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000148139949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.376 kcal (2) G-P(sol) polarization free energy of solvation -57.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds