Wall clock time and date at job start Mon Mar 30 2020 04:53:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46425 * 110.99771 * 2 1 4 4 C 1.53387 * 108.65567 * 178.98465 * 3 2 1 5 5 C 1.53038 * 107.91288 * 291.67805 * 4 3 2 6 6 C 1.50814 * 109.65062 * 47.30834 * 5 4 3 7 7 C 1.38391 * 118.06073 * 164.53394 * 6 5 4 8 8 C 1.38954 * 120.42706 * 179.71374 * 7 6 5 9 9 N 1.39404 * 120.14894 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00024 * 144.89548 * 9 8 7 11 11 O 1.21801 * 119.99801 * 4.62100 * 10 9 8 12 12 C 1.41639 * 119.99880 * 184.61367 * 10 9 8 13 13 H 1.08002 * 120.00540 * 0.02562 * 12 10 9 14 14 C 1.40144 * 119.99962 * 180.02562 * 12 10 9 15 15 N 1.30632 * 120.00131 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 120.00135 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47023 * 60.00227 * 16 14 12 18 18 H 1.48503 * 109.47103 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47100 * 299.99958 * 16 14 12 20 20 C 1.39224 * 119.70818 * 359.97134 * 8 7 6 21 21 C 1.37568 * 119.86581 * 0.22648 * 20 8 7 22 22 C 1.38610 * 121.99578 * 344.44024 * 6 5 4 23 23 H 1.09002 * 109.47140 * 289.28428 * 1 2 3 24 24 H 1.09003 * 109.47220 * 49.28172 * 1 2 3 25 25 H 1.09003 * 109.47128 * 169.28723 * 1 2 3 26 26 H 1.08997 * 109.60900 * 59.23173 * 3 2 1 27 27 H 1.08998 * 109.73814 * 298.81051 * 3 2 1 28 28 H 1.09002 * 109.76697 * 172.06828 * 4 3 2 29 29 H 1.09007 * 109.81538 * 51.30936 * 4 3 2 30 30 H 1.09007 * 109.43915 * 287.25438 * 5 4 3 31 31 H 1.08999 * 109.41336 * 167.35304 * 5 4 3 32 32 H 1.08001 * 119.78953 * 359.69728 * 7 6 5 33 33 H 0.97003 * 120.00243 * 324.90763 * 9 8 7 34 34 H 0.96999 * 119.99959 * 179.97438 * 15 14 12 35 35 H 1.07995 * 120.06402 * 180.10380 * 20 8 7 36 36 H 1.07993 * 119.72678 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9937 1.3670 0.0000 4 6 3.5261 1.3044 0.0258 5 6 3.9519 0.7564 1.3897 6 6 3.1352 -0.4672 1.7221 7 6 3.5808 -1.2900 2.7417 8 6 2.8633 -2.4270 3.0928 9 7 3.3178 -3.2521 4.1204 10 6 2.4344 -3.8669 4.9316 11 8 1.2396 -3.7697 4.7159 12 6 2.8954 -4.6262 6.0349 13 1 3.9548 -4.7122 6.2264 14 6 1.9768 -5.2659 6.8781 15 7 0.6954 -5.1615 6.6469 16 14 2.5848 -6.2666 8.3336 17 1 3.3606 -5.3901 9.2475 18 1 1.4231 -6.8362 9.0625 19 1 3.4539 -7.3685 7.8482 20 6 1.6885 -2.7386 2.4138 21 6 1.2477 -1.9229 1.3975 22 6 1.9683 -0.7783 1.0419 23 1 -0.3633 0.3394 0.9700 24 1 -0.3634 0.6704 -0.7789 25 1 -0.3633 -1.0098 -0.1910 26 1 1.6344 1.8967 0.8822 27 1 1.6640 1.8878 -0.8989 28 1 3.9382 2.3036 -0.1153 29 1 3.8822 0.6437 -0.7647 30 1 3.7915 1.5180 2.1529 31 1 5.0085 0.4902 1.3594 32 1 4.4922 -1.0471 3.2677 33 1 4.2698 -3.3837 4.2518 34 1 0.0596 -5.6046 7.2303 35 1 1.1255 -3.6199 2.6830 36 1 0.3364 -2.1669 0.8720 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000185797092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:34 Heat of formation + Delta-G solvation = -7.215065 kcal Electronic energy + Delta-G solvation = -19092.955389 eV Core-core repulsion = 16155.591938 eV Total energy + Delta-G solvation = -2937.363451 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.15269 -38.17908 -35.87973 -34.12676 -33.10016 -32.28000 -29.68435 -28.58893 -26.84541 -26.42248 -23.59329 -22.89420 -21.21596 -20.50681 -18.71620 -17.52180 -16.55668 -16.04687 -15.68696 -15.29283 -14.70995 -14.25023 -14.00522 -13.82974 -13.25489 -13.13838 -13.02667 -12.70046 -12.45387 -12.06303 -11.81121 -11.67352 -11.47293 -11.25824 -11.10240 -10.88828 -10.75086 -10.57544 -10.35141 -10.20815 -9.63038 -8.97220 -8.30417 -8.13154 -7.62178 -6.58423 -6.34124 -4.87231 2.02442 2.07754 3.08036 3.13290 3.15220 3.92750 4.00583 4.32400 4.55641 4.71300 4.89584 4.94023 5.06568 5.19400 5.47049 5.50417 5.58684 5.61451 5.64400 5.76198 5.85719 5.87769 5.95522 6.02303 6.10119 6.21469 6.32351 6.67227 6.71063 6.79425 7.23910 7.25396 7.28998 7.47483 7.69833 7.92471 8.08938 8.32078 8.82764 9.35849 10.41705 10.63469 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.043086 B = 0.004520 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.708823 B = 6193.156502 C = 6686.767174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.496 5.496 3 C 0.058 3.942 4 C -0.119 4.119 5 C -0.074 4.074 6 C -0.106 4.106 7 C -0.154 4.154 8 C 0.171 3.829 9 N -0.703 5.703 10 C 0.545 3.455 11 O -0.569 6.569 12 C -0.540 4.540 13 H 0.069 0.931 14 C 0.089 3.911 15 N -0.749 5.749 16 Si 0.912 3.088 17 H -0.266 1.266 18 H -0.279 1.279 19 H -0.266 1.266 20 C -0.103 4.103 21 C -0.139 4.139 22 C 0.074 3.926 23 H 0.036 0.964 24 H 0.067 0.933 25 H 0.076 0.924 26 H 0.040 0.960 27 H 0.077 0.923 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.115 0.885 33 H 0.390 0.610 34 H 0.273 0.727 35 H 0.144 0.856 36 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.034 9.966 -9.942 14.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 N -0.211 5.211 3 C -0.069 4.069 4 C -0.157 4.157 5 C -0.111 4.111 6 C -0.109 4.109 7 C -0.177 4.177 8 C 0.072 3.928 9 N -0.346 5.346 10 C 0.354 3.646 11 O -0.453 6.453 12 C -0.576 4.576 13 H 0.087 0.913 14 C -0.134 4.134 15 N -0.376 5.376 16 Si 0.736 3.264 17 H -0.191 1.191 18 H -0.204 1.204 19 H -0.191 1.191 20 C -0.125 4.125 21 C -0.160 4.160 22 C -0.024 4.024 23 H 0.055 0.945 24 H 0.086 0.914 25 H 0.095 0.905 26 H 0.058 0.942 27 H 0.095 0.905 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.133 0.867 33 H 0.223 0.777 34 H 0.083 0.917 35 H 0.161 0.839 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 3.084 9.768 -10.409 14.603 hybrid contribution 0.559 -0.249 1.510 1.629 sum 3.643 9.519 -8.899 13.530 Atomic orbital electron populations 1.22496 0.85870 1.02997 1.00740 1.58254 1.08001 1.12411 1.42437 1.22092 0.95734 0.88196 1.00877 1.21679 0.94755 1.01217 0.98068 1.20450 0.98901 0.95044 0.96676 1.19086 0.96428 0.97758 0.97637 1.20672 1.02287 0.94377 1.00329 1.17861 0.94932 0.90657 0.89394 1.44025 1.10131 1.49198 1.31294 1.16996 0.85226 0.79921 0.82425 1.90631 1.15563 1.64896 1.74211 1.19994 0.94450 1.31977 1.11132 0.91295 1.25754 0.94306 0.95240 0.98111 1.70004 1.01880 1.32284 1.33469 0.86352 0.79005 0.80141 0.80860 1.19096 1.20366 1.19053 1.21347 0.96911 1.00983 0.93217 1.20992 1.00428 0.95422 0.99174 1.18383 0.95940 0.95705 0.92335 0.94544 0.91422 0.90499 0.94168 0.90473 0.91112 0.90747 0.91376 0.90942 0.86716 0.77697 0.91655 0.83862 0.86353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 8.81 60.06 0.53 0.84 16 2 N -0.50 -7.16 4.77 -179.01 -0.85 -8.01 16 3 C 0.06 0.68 5.46 -3.88 -0.02 0.66 16 4 C -0.12 -1.32 6.19 -26.51 -0.16 -1.48 16 5 C -0.07 -0.94 5.80 -27.81 -0.16 -1.11 16 6 C -0.11 -1.78 5.74 -104.37 -0.60 -2.38 16 7 C -0.15 -2.85 9.55 -39.26 -0.38 -3.22 16 8 C 0.17 3.73 6.30 -83.78 -0.53 3.20 16 9 N -0.70 -16.29 5.31 -12.47 -0.07 -16.36 16 10 C 0.55 15.35 7.41 -14.96 -0.11 15.24 16 11 O -0.57 -17.90 12.30 5.10 0.06 -17.84 16 12 C -0.54 -14.86 9.31 -37.57 -0.35 -15.21 16 13 H 0.07 1.72 7.85 -52.49 -0.41 1.31 16 14 C 0.09 2.40 5.50 -17.35 -0.10 2.30 16 15 N -0.75 -21.74 11.73 55.56 0.65 -21.09 16 16 Si 0.91 19.46 29.56 -169.99 -5.02 14.44 16 17 H -0.27 -5.54 7.11 56.52 0.40 -5.14 16 18 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 19 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 20 C -0.10 -2.30 8.68 -39.46 -0.34 -2.65 16 21 C -0.14 -2.64 9.01 -39.23 -0.35 -2.99 16 22 C 0.07 1.29 5.82 -83.73 -0.49 0.80 16 23 H 0.04 0.48 8.12 -51.93 -0.42 0.06 16 24 H 0.07 0.67 8.06 -51.93 -0.42 0.25 16 25 H 0.08 0.94 6.30 -51.93 -0.33 0.62 16 26 H 0.04 0.49 8.11 -51.93 -0.42 0.07 16 27 H 0.08 0.75 8.13 -51.93 -0.42 0.32 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.07 0.83 8.14 -51.92 -0.42 0.41 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 33 H 0.39 7.77 8.78 -40.82 -0.36 7.41 16 34 H 0.27 7.15 8.29 -40.82 -0.34 6.82 16 35 H 0.14 3.61 6.22 -52.49 -0.33 3.29 16 36 H 0.12 2.01 5.96 -52.49 -0.31 1.69 16 LS Contribution 295.04 15.07 4.45 4.45 Total: -1.00 -32.82 295.04 -8.51 -41.34 By element: Atomic # 1 Polarization: 13.73 SS G_CDS: -4.67 Total: 9.06 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: -3.06 Total: -5.99 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.27 Total: -45.45 kcal Atomic # 8 Polarization: -17.90 SS G_CDS: 0.06 Total: -17.84 kcal Atomic # 14 Polarization: 19.46 SS G_CDS: -5.02 Total: 14.44 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -32.82 -8.51 -41.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185797092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.122 kcal (2) G-P(sol) polarization free energy of solvation -32.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.337 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.215 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds