Wall clock time and date at job start Mon Mar 30 2020 04:53:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46425 * 110.99771 * 2 1 4 4 C 1.53387 * 108.65567 * 178.98465 * 3 2 1 5 5 C 1.53038 * 107.91288 * 291.67805 * 4 3 2 6 6 C 1.50814 * 109.65062 * 47.30834 * 5 4 3 7 7 C 1.38391 * 118.06073 * 164.53394 * 6 5 4 8 8 C 1.38954 * 120.42706 * 179.71374 * 7 6 5 9 9 N 1.39404 * 120.14894 * 179.97438 * 8 7 6 10 10 C 1.34774 * 120.00024 * 144.89548 * 9 8 7 11 11 O 1.21801 * 119.99801 * 4.62100 * 10 9 8 12 12 C 1.41639 * 119.99880 * 184.61367 * 10 9 8 13 13 H 1.08002 * 120.00540 * 0.02562 * 12 10 9 14 14 C 1.40144 * 119.99962 * 180.02562 * 12 10 9 15 15 N 1.30632 * 120.00131 * 359.97438 * 14 12 10 16 16 Si 1.86802 * 120.00135 * 180.02562 * 14 12 10 17 17 H 1.48504 * 109.47023 * 60.00227 * 16 14 12 18 18 H 1.48503 * 109.47103 * 179.97438 * 16 14 12 19 19 H 1.48490 * 109.47100 * 299.99958 * 16 14 12 20 20 C 1.39224 * 119.70818 * 359.97134 * 8 7 6 21 21 C 1.37568 * 119.86581 * 0.22648 * 20 8 7 22 22 C 1.38610 * 121.99578 * 344.44024 * 6 5 4 23 23 H 1.09002 * 109.47140 * 289.28428 * 1 2 3 24 24 H 1.09003 * 109.47220 * 49.28172 * 1 2 3 25 25 H 1.09003 * 109.47128 * 169.28723 * 1 2 3 26 26 H 1.08997 * 109.60900 * 59.23173 * 3 2 1 27 27 H 1.08998 * 109.73814 * 298.81051 * 3 2 1 28 28 H 1.09002 * 109.76697 * 172.06828 * 4 3 2 29 29 H 1.09007 * 109.81538 * 51.30936 * 4 3 2 30 30 H 1.09007 * 109.43915 * 287.25438 * 5 4 3 31 31 H 1.08999 * 109.41336 * 167.35304 * 5 4 3 32 32 H 1.08001 * 119.78953 * 359.69728 * 7 6 5 33 33 H 0.97003 * 120.00243 * 324.90763 * 9 8 7 34 34 H 0.96999 * 119.99959 * 179.97438 * 15 14 12 35 35 H 1.07995 * 120.06402 * 180.10380 * 20 8 7 36 36 H 1.07993 * 119.72678 * 179.97438 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9937 1.3670 0.0000 4 6 3.5261 1.3044 0.0258 5 6 3.9519 0.7564 1.3897 6 6 3.1352 -0.4672 1.7221 7 6 3.5808 -1.2900 2.7417 8 6 2.8633 -2.4270 3.0928 9 7 3.3178 -3.2521 4.1204 10 6 2.4344 -3.8669 4.9316 11 8 1.2396 -3.7697 4.7159 12 6 2.8954 -4.6262 6.0349 13 1 3.9548 -4.7122 6.2264 14 6 1.9768 -5.2659 6.8781 15 7 0.6954 -5.1615 6.6469 16 14 2.5848 -6.2666 8.3336 17 1 3.3606 -5.3901 9.2475 18 1 1.4231 -6.8362 9.0625 19 1 3.4539 -7.3685 7.8482 20 6 1.6885 -2.7386 2.4138 21 6 1.2477 -1.9229 1.3975 22 6 1.9683 -0.7783 1.0419 23 1 -0.3633 0.3394 0.9700 24 1 -0.3634 0.6704 -0.7789 25 1 -0.3633 -1.0098 -0.1910 26 1 1.6344 1.8967 0.8822 27 1 1.6640 1.8878 -0.8989 28 1 3.9382 2.3036 -0.1153 29 1 3.8822 0.6437 -0.7647 30 1 3.7915 1.5180 2.1529 31 1 5.0085 0.4902 1.3594 32 1 4.4922 -1.0471 3.2677 33 1 4.2698 -3.3837 4.2518 34 1 0.0596 -5.6046 7.2303 35 1 1.1255 -3.6199 2.6830 36 1 0.3364 -2.1669 0.8720 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000185797092.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:33 Heat of formation + Delta-G solvation = -30.006174 kcal Electronic energy + Delta-G solvation = -19093.943685 eV Core-core repulsion = 16155.591938 eV Total energy + Delta-G solvation = -2938.351747 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.50607 -39.95509 -37.50013 -35.25370 -34.95778 -34.30101 -31.02087 -30.24736 -28.32114 -27.88874 -24.88428 -24.26975 -22.59091 -22.22675 -20.13156 -19.45615 -17.94777 -17.66895 -17.34747 -16.80388 -15.96783 -15.80906 -15.44904 -15.05573 -14.83303 -14.62148 -14.43603 -14.19780 -13.84617 -13.52916 -13.30101 -12.99258 -12.86715 -12.77363 -12.68588 -12.63057 -12.07181 -11.99146 -11.71692 -11.49722 -11.11168 -10.90345 -9.99892 -9.73938 -9.54407 -8.38346 -8.13199 -7.00888 0.50731 0.56886 1.38763 1.41700 1.54443 2.20947 2.35692 2.72595 3.04920 3.05695 3.64558 3.79281 3.91700 3.98556 4.13048 4.36781 4.46447 4.47127 4.56252 4.62416 4.64521 4.73480 4.89750 4.93810 5.04795 5.05790 5.18461 5.20522 5.28351 5.34276 5.40575 5.64152 5.80204 5.89959 6.16412 6.20464 6.31934 6.57554 6.73424 7.43896 8.39997 8.58020 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.043086 B = 0.004520 C = 0.004186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 649.708823 B = 6193.156502 C = 6686.767174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.501 5.501 3 C 0.051 3.949 4 C -0.115 4.115 5 C -0.074 4.074 6 C -0.107 4.107 7 C -0.144 4.144 8 C 0.131 3.869 9 N -0.696 5.696 10 C 0.529 3.471 11 O -0.616 6.616 12 C -0.568 4.568 13 H 0.090 0.910 14 C 0.032 3.968 15 N -0.803 5.803 16 Si 1.003 2.997 17 H -0.253 1.253 18 H -0.272 1.272 19 H -0.253 1.253 20 C -0.132 4.132 21 C -0.147 4.147 22 C 0.084 3.916 23 H 0.026 0.974 24 H 0.101 0.899 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.106 0.894 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.081 0.919 31 H 0.090 0.910 32 H 0.139 0.861 33 H 0.404 0.596 34 H 0.279 0.721 35 H 0.099 0.901 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.977 12.030 -10.555 17.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.216 5.216 3 C -0.075 4.075 4 C -0.152 4.152 5 C -0.111 4.111 6 C -0.111 4.111 7 C -0.165 4.165 8 C 0.033 3.967 9 N -0.341 5.341 10 C 0.338 3.662 11 O -0.504 6.504 12 C -0.603 4.603 13 H 0.108 0.892 14 C -0.186 4.186 15 N -0.431 5.431 16 Si 0.821 3.179 17 H -0.177 1.177 18 H -0.197 1.197 19 H -0.177 1.177 20 C -0.154 4.154 21 C -0.168 4.168 22 C -0.015 4.015 23 H 0.045 0.955 24 H 0.119 0.881 25 H 0.090 0.910 26 H 0.058 0.942 27 H 0.125 0.875 28 H 0.124 0.876 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.157 0.843 33 H 0.239 0.761 34 H 0.089 0.911 35 H 0.117 0.883 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 5.066 11.880 -11.079 17.016 hybrid contribution -0.071 -0.742 1.496 1.671 sum 4.996 11.138 -9.584 15.519 Atomic orbital electron populations 1.22577 0.84675 1.03642 1.01398 1.58262 1.09084 1.13922 1.40305 1.22328 0.96430 0.86394 1.02318 1.21714 0.94086 1.02956 0.96487 1.20584 0.99055 0.93189 0.98270 1.19646 0.96398 0.98751 0.96289 1.20928 1.02310 0.92902 1.00394 1.18102 0.96037 0.92406 0.90121 1.43571 1.10141 1.49189 1.31207 1.17406 0.85213 0.80281 0.83290 1.90593 1.17618 1.66625 1.75550 1.20543 0.95847 1.32407 1.11476 0.89156 1.27053 0.94097 0.96032 1.01460 1.70170 1.03845 1.33786 1.35342 0.84995 0.78609 0.78256 0.76001 1.17677 1.19675 1.17651 1.21084 0.97786 1.00900 0.95592 1.21086 1.01233 0.95928 0.98597 1.18616 0.95619 0.95096 0.92128 0.95515 0.88089 0.91015 0.94221 0.87535 0.87624 0.91240 0.90096 0.89193 0.84285 0.76123 0.91123 0.88296 0.85260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.53 8.81 127.69 1.13 1.65 16 2 N -0.50 -13.25 4.77 -720.27 -3.44 -16.69 16 3 C 0.05 1.00 5.46 86.52 0.47 1.47 16 4 C -0.11 -2.01 6.19 30.74 0.19 -1.82 16 5 C -0.07 -1.61 5.80 29.90 0.17 -1.44 16 6 C -0.11 -3.42 5.74 -19.70 -0.11 -3.53 16 7 C -0.14 -5.22 9.55 22.48 0.21 -5.00 16 8 C 0.13 5.97 6.30 38.35 0.24 6.21 16 9 N -0.70 -33.79 5.31 -311.53 -1.65 -35.44 16 10 C 0.53 31.44 7.41 85.08 0.63 32.07 16 11 O -0.62 -41.65 12.30 -4.67 -0.06 -41.71 16 12 C -0.57 -32.14 9.31 23.57 0.22 -31.92 16 13 H 0.09 4.52 7.85 -2.91 -0.02 4.50 16 14 C 0.03 1.74 5.50 85.33 0.47 2.21 16 15 N -0.80 -48.70 11.73 21.85 0.26 -48.45 16 16 Si 1.00 40.12 29.56 68.60 2.03 42.14 16 17 H -0.25 -9.50 7.11 99.48 0.71 -8.80 16 18 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 19 H -0.25 -9.49 7.11 99.48 0.71 -8.79 16 20 C -0.13 -6.34 8.68 22.35 0.19 -6.15 16 21 C -0.15 -5.82 9.01 22.50 0.20 -5.61 16 22 C 0.08 2.84 5.82 38.43 0.22 3.07 16 23 H 0.03 0.67 8.12 -2.39 -0.02 0.65 16 24 H 0.10 1.65 8.06 -2.39 -0.02 1.63 16 25 H 0.07 1.71 6.30 -2.39 -0.02 1.69 16 26 H 0.04 0.81 8.11 -2.39 -0.02 0.79 16 27 H 0.11 1.51 8.13 -2.39 -0.02 1.49 16 28 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 29 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 31 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.14 4.27 8.06 -2.91 -0.02 4.24 16 33 H 0.40 16.54 8.78 -92.71 -0.81 15.73 16 34 H 0.28 15.23 8.29 -92.71 -0.77 14.46 16 35 H 0.10 5.57 6.22 -2.91 -0.02 5.55 16 36 H 0.13 4.61 5.96 -2.91 -0.02 4.60 16 Total: -1.00 -76.84 295.04 1.67 -75.18 By element: Atomic # 1 Polarization: 33.46 SS G_CDS: 0.29 Total: 33.75 kcal Atomic # 6 Polarization: -13.03 SS G_CDS: 4.24 Total: -8.79 kcal Atomic # 7 Polarization: -95.74 SS G_CDS: -4.83 Total: -100.58 kcal Atomic # 8 Polarization: -41.65 SS G_CDS: -0.06 Total: -41.71 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 2.03 Total: 42.14 kcal Total: -76.84 1.67 -75.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000185797092.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.171 kcal (2) G-P(sol) polarization free energy of solvation -76.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds