Wall clock time and date at job start Mon Mar 30 2020 04:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00080 * 2 1 4 4 C 1.53001 * 109.47017 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47249 * 65.00585 * 4 3 2 6 6 C 1.46500 * 119.99844 * 270.00272 * 5 4 3 7 7 C 1.50699 * 109.46799 * 269.99534 * 6 5 4 8 8 H 1.07998 * 119.99993 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00063 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99798 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00375 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47368 * 89.99759 * 11 9 7 13 13 H 1.48501 * 109.47511 * 210.00275 * 11 9 7 14 14 H 1.48509 * 109.47050 * 329.99952 * 11 9 7 15 15 C 1.39707 * 120.00245 * 89.99613 * 5 4 3 16 16 C 1.39034 * 119.99676 * 359.97438 * 15 5 4 17 17 C 1.38215 * 120.22835 * 180.02562 * 16 15 5 18 18 C 1.38015 * 120.23098 * 359.74292 * 17 16 15 19 19 C 1.39639 * 119.99722 * 0.51650 * 18 17 16 20 20 C 1.43205 * 120.11260 * 179.76515 * 19 18 17 21 21 N 8.11857 * 122.23006 * 274.19335 * 2 1 3 22 22 C 1.38619 * 120.00066 * 180.02562 * 15 5 4 23 23 H 1.09008 * 109.47016 * 299.99879 * 1 2 3 24 24 H 1.09008 * 109.47484 * 59.99498 * 1 2 3 25 25 H 1.08998 * 109.47483 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47250 * 60.00578 * 3 2 1 27 27 H 1.09003 * 109.47578 * 300.00365 * 3 2 1 28 28 H 1.08995 * 109.47455 * 305.00498 * 4 3 2 29 29 H 1.09010 * 109.47417 * 184.99994 * 4 3 2 30 30 H 1.08996 * 109.47242 * 29.99336 * 6 5 4 31 31 H 1.09003 * 109.47345 * 149.99675 * 6 5 4 32 32 H 0.97001 * 120.00215 * 180.02562 * 10 9 7 33 33 H 1.07998 * 119.88643 * 0.02562 * 16 15 5 34 34 H 1.07999 * 119.88420 * 180.02562 * 17 16 15 35 35 H 1.08001 * 120.00123 * 180.27689 * 18 17 16 36 36 H 1.07997 * 120.11639 * 359.97438 * 22 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1051 -0.8921 -1.3430 7 6 5.5008 -1.2978 -0.9452 8 1 6.2197 -0.5460 -0.6548 9 6 5.8605 -2.6289 -0.9531 10 7 4.9852 -3.5444 -1.3073 11 14 7.5903 -3.1320 -0.4594 12 1 7.6338 -3.3853 1.0032 13 1 7.9731 -4.3683 -1.1875 14 1 8.5394 -2.0422 -0.8014 15 6 4.2719 1.3619 -2.3609 16 6 4.1484 2.7442 -2.2755 17 6 4.4397 3.5377 -3.3690 18 6 4.8603 2.9639 -4.5517 19 6 4.9824 1.5763 -4.6497 20 6 5.4138 0.9780 -5.8772 21 7 5.7588 0.5022 -6.8492 22 6 4.6879 0.7751 -3.5459 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8901 27 1 1.6885 1.8464 -0.8899 28 1 3.8514 0.5681 0.8408 29 1 3.9786 2.1764 0.0889 30 1 3.3852 -1.3629 -0.6736 31 1 3.9118 -1.2113 -2.3671 32 1 5.2381 -4.4808 -1.3125 33 1 3.8237 3.1994 -1.3516 34 1 4.3423 4.6108 -3.2964 35 1 5.0913 3.5878 -5.4025 36 1 4.7841 -0.2984 -3.6144 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227618023.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:57 Heat of formation + Delta-G solvation = 17.011059 kcal Electronic energy + Delta-G solvation = -19014.436757 eV Core-core repulsion = 16078.123829 eV Total energy + Delta-G solvation = -2936.312927 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -39.33529 -37.70477 -36.36410 -35.28844 -32.77996 -31.04518 -30.34046 -28.90018 -26.67982 -25.68259 -23.71607 -22.84372 -22.09729 -20.34144 -18.04490 -16.52952 -16.45616 -15.92705 -15.71296 -15.14464 -14.94142 -14.61155 -14.23922 -13.68782 -13.59038 -13.41549 -12.90382 -12.76986 -12.33012 -12.20758 -11.96794 -11.69561 -11.56288 -11.30165 -11.08773 -11.03585 -10.90287 -10.72376 -10.32277 -10.03813 -9.83123 -9.42007 -9.01636 -8.52957 -8.46300 -6.63435 -6.03152 -4.14606 1.27552 2.01739 3.03184 3.27799 3.35244 3.38142 3.42012 3.89046 4.08025 4.34827 4.39309 4.45617 5.22989 5.26091 5.31113 5.36775 5.45434 5.54715 5.55441 5.57824 5.61212 5.74170 5.85474 5.94501 6.03462 6.25065 6.33825 6.66814 6.81814 6.82694 7.03726 7.27924 7.42431 7.47204 7.81434 7.85209 8.13012 8.20123 8.36348 8.93413 9.51779 10.98386 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.010689 B = 0.008930 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.834612 B = 3134.644068 C = 4928.128685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.372 6.372 3 C 0.042 3.958 4 C 0.125 3.875 5 N -0.597 5.597 6 C 0.251 3.749 7 C -0.535 4.535 8 H 0.059 0.941 9 C 0.063 3.937 10 N -0.891 5.891 11 Si 0.893 3.107 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.273 1.273 15 C 0.238 3.762 16 C -0.197 4.197 17 C -0.075 4.075 18 C -0.157 4.157 19 C 0.009 3.991 20 C 0.268 3.732 21 N -0.439 5.439 22 C -0.136 4.136 23 H 0.034 0.966 24 H 0.035 0.965 25 H 0.083 0.917 26 H 0.048 0.952 27 H 0.048 0.952 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.031 0.969 32 H 0.263 0.737 33 H 0.120 0.880 34 H 0.121 0.879 35 H 0.117 0.883 36 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.707 13.027 2.337 14.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.290 6.290 3 C -0.036 4.036 4 C 0.000 4.000 5 N -0.301 5.301 6 C 0.131 3.869 7 C -0.574 4.574 8 H 0.077 0.923 9 C -0.140 4.140 10 N -0.530 5.530 11 Si 0.721 3.279 12 H -0.206 1.206 13 H -0.212 1.212 14 H -0.198 1.198 15 C 0.130 3.870 16 C -0.221 4.221 17 C -0.094 4.094 18 C -0.180 4.180 19 C 0.005 3.995 20 C -0.046 4.046 21 N -0.114 5.114 22 C -0.161 4.161 23 H 0.052 0.948 24 H 0.054 0.946 25 H 0.101 0.899 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.106 0.894 29 H 0.099 0.901 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.073 0.927 33 H 0.138 0.862 34 H 0.139 0.861 35 H 0.135 0.865 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -6.133 11.733 1.006 13.277 hybrid contribution 0.595 -0.033 0.722 0.936 sum -5.537 11.700 1.728 13.059 Atomic orbital electron populations 1.22689 0.82142 1.02487 0.99104 1.88082 1.18642 1.27145 1.95148 1.23148 0.95668 0.85295 0.99491 1.21387 0.90857 0.99003 0.88723 1.47189 1.67491 1.07694 1.07691 1.19373 0.96805 0.72408 0.98281 1.21586 0.97542 0.92242 1.46032 0.92255 1.24938 0.97362 0.96472 0.95178 1.69934 1.34327 1.01118 1.47601 0.86574 0.84666 0.78157 0.78527 1.20630 1.21173 1.19822 1.17742 0.91573 0.90037 0.87641 1.20795 1.09685 0.91944 0.99697 1.20592 0.97734 0.98922 0.92150 1.20622 1.06435 0.92184 0.98798 1.15750 1.03426 0.92929 0.87381 1.25890 0.93048 0.92832 0.92868 1.81154 1.09764 1.08540 1.11986 1.20907 1.03571 1.00927 0.90745 0.94768 0.94588 0.89873 0.93427 0.93413 0.89415 0.90109 0.93452 0.95086 0.92687 0.86234 0.86150 0.86462 0.83989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 11.01 101.05 1.11 1.52 16 2 O -0.37 -6.21 9.53 -35.23 -0.34 -6.54 16 3 C 0.04 0.58 6.28 37.16 0.23 0.81 16 4 C 0.12 1.94 5.56 -4.04 -0.02 1.92 16 5 N -0.60 -11.48 2.55 -173.16 -0.44 -11.92 16 6 C 0.25 6.01 4.73 -5.19 -0.02 5.99 16 7 C -0.54 -14.14 9.39 -34.44 -0.32 -14.46 16 8 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 9 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 10 N -0.89 -25.50 13.29 55.43 0.74 -24.77 16 11 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 12 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 13 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 15 C 0.24 4.21 6.55 -83.83 -0.55 3.66 16 16 C -0.20 -2.78 9.20 -39.29 -0.36 -3.14 16 17 C -0.08 -0.94 10.02 -39.67 -0.40 -1.33 16 18 C -0.16 -2.14 9.75 -39.14 -0.38 -2.52 16 19 C 0.01 0.15 5.73 -106.96 -0.61 -0.46 16 20 C 0.27 4.73 15.33 -22.48 -0.34 4.39 16 21 N -0.44 -8.39 18.54 41.83 0.78 -7.62 16 22 C -0.14 -2.54 8.91 -38.95 -0.35 -2.89 16 23 H 0.03 0.35 8.14 -51.92 -0.42 -0.07 16 24 H 0.04 0.41 8.14 -51.92 -0.42 -0.01 16 25 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 26 H 0.05 0.53 8.14 -51.92 -0.42 0.10 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.49 8.07 -51.93 -0.42 1.07 16 29 H 0.08 1.02 6.19 -51.92 -0.32 0.70 16 30 H 0.05 1.24 7.11 -51.93 -0.37 0.87 16 31 H 0.03 0.80 6.19 -51.93 -0.32 0.48 16 32 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 33 H 0.12 1.42 6.12 -52.49 -0.32 1.09 16 34 H 0.12 1.12 8.06 -52.49 -0.42 0.69 16 35 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 36 H 0.14 3.03 6.13 -52.49 -0.32 2.71 16 LS Contribution 315.45 15.07 4.75 4.75 Total: -1.00 -29.81 315.45 -6.23 -36.04 By element: Atomic # 1 Polarization: 3.29 SS G_CDS: -4.58 Total: -1.29 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: -2.12 Total: -4.89 kcal Atomic # 7 Polarization: -45.37 SS G_CDS: 1.07 Total: -44.30 kcal Atomic # 8 Polarization: -6.21 SS G_CDS: -0.34 Total: -6.54 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -29.81 -6.23 -36.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227618023.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.049 kcal (2) G-P(sol) polarization free energy of solvation -29.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds