Wall clock time and date at job start Mon Mar 30 2020 04:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42895 * 114.00080 * 2 1 4 4 C 1.53001 * 109.47017 * 180.02562 * 3 2 1 5 5 N 1.46500 * 109.47249 * 65.00585 * 4 3 2 6 6 C 1.46500 * 119.99844 * 270.00272 * 5 4 3 7 7 C 1.50699 * 109.46799 * 269.99534 * 6 5 4 8 8 H 1.07998 * 119.99993 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00063 * 180.02562 * 7 6 5 10 10 N 1.31517 * 119.99798 * 359.97438 * 9 7 6 11 11 Si 1.86794 * 120.00375 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47368 * 89.99759 * 11 9 7 13 13 H 1.48501 * 109.47511 * 210.00275 * 11 9 7 14 14 H 1.48509 * 109.47050 * 329.99952 * 11 9 7 15 15 C 1.39707 * 120.00245 * 89.99613 * 5 4 3 16 16 C 1.39034 * 119.99676 * 359.97438 * 15 5 4 17 17 C 1.38215 * 120.22835 * 180.02562 * 16 15 5 18 18 C 1.38015 * 120.23098 * 359.74292 * 17 16 15 19 19 C 1.39639 * 119.99722 * 0.51650 * 18 17 16 20 20 C 1.43205 * 120.11260 * 179.76515 * 19 18 17 21 21 N 8.11857 * 122.23006 * 274.19335 * 2 1 3 22 22 C 1.38619 * 120.00066 * 180.02562 * 15 5 4 23 23 H 1.09008 * 109.47016 * 299.99879 * 1 2 3 24 24 H 1.09008 * 109.47484 * 59.99498 * 1 2 3 25 25 H 1.08998 * 109.47483 * 179.97438 * 1 2 3 26 26 H 1.09008 * 109.47250 * 60.00578 * 3 2 1 27 27 H 1.09003 * 109.47578 * 300.00365 * 3 2 1 28 28 H 1.08995 * 109.47455 * 305.00498 * 4 3 2 29 29 H 1.09010 * 109.47417 * 184.99994 * 4 3 2 30 30 H 1.08996 * 109.47242 * 29.99336 * 6 5 4 31 31 H 1.09003 * 109.47345 * 149.99675 * 6 5 4 32 32 H 0.97001 * 120.00215 * 180.02562 * 10 9 7 33 33 H 1.07998 * 119.88643 * 0.02562 * 16 15 5 34 34 H 1.07999 * 119.88420 * 180.02562 * 17 16 15 35 35 H 1.08001 * 120.00123 * 180.27689 * 18 17 16 36 36 H 1.07997 * 120.11639 * 359.97438 * 22 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1845 -0.0006 5 7 3.9756 0.5644 -1.2528 6 6 4.1051 -0.8921 -1.3430 7 6 5.5008 -1.2978 -0.9452 8 1 6.2197 -0.5460 -0.6548 9 6 5.8605 -2.6289 -0.9531 10 7 4.9852 -3.5444 -1.3073 11 14 7.5903 -3.1320 -0.4594 12 1 7.6338 -3.3853 1.0032 13 1 7.9731 -4.3683 -1.1875 14 1 8.5394 -2.0422 -0.8014 15 6 4.2719 1.3619 -2.3609 16 6 4.1484 2.7442 -2.2755 17 6 4.4397 3.5377 -3.3690 18 6 4.8603 2.9639 -4.5517 19 6 4.9824 1.5763 -4.6497 20 6 5.4138 0.9780 -5.8772 21 7 5.7588 0.5022 -6.8492 22 6 4.6879 0.7751 -3.5459 23 1 -0.3633 0.5139 0.8901 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 1.6886 1.8463 0.8901 27 1 1.6885 1.8464 -0.8899 28 1 3.8514 0.5681 0.8408 29 1 3.9786 2.1764 0.0889 30 1 3.3852 -1.3629 -0.6736 31 1 3.9118 -1.2113 -2.3671 32 1 5.2381 -4.4808 -1.3125 33 1 3.8237 3.1994 -1.3516 34 1 4.3423 4.6108 -3.2964 35 1 5.0913 3.5878 -5.4025 36 1 4.7841 -0.2984 -3.6144 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227618023.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:57:57 Heat of formation + Delta-G solvation = -0.524996 kcal Electronic energy + Delta-G solvation = -19015.197177 eV Core-core repulsion = 16078.123829 eV Total energy + Delta-G solvation = -2937.073348 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.61238 -38.87355 -37.76017 -36.69872 -34.75468 -32.33389 -31.53645 -30.47239 -28.09474 -26.96672 -25.14409 -24.38174 -23.33390 -21.69593 -19.37119 -18.52845 -17.70932 -17.17240 -16.90170 -16.64234 -16.20674 -16.04696 -15.62694 -15.06477 -14.86181 -14.77617 -14.52714 -14.15840 -13.80528 -13.54071 -13.42711 -13.11124 -12.88332 -12.76261 -12.65387 -12.49118 -12.28113 -12.19651 -11.98685 -11.69532 -11.49902 -10.60392 -10.55922 -10.43272 -9.73950 -8.33871 -7.82605 -6.31113 0.00339 0.83098 1.36892 1.38696 1.48406 1.61594 2.06968 2.35476 2.58494 3.02169 3.03808 3.12640 3.17690 4.15717 4.25796 4.27940 4.36183 4.45862 4.51235 4.58445 4.59095 4.66010 4.72514 4.85405 4.88972 5.05519 5.11757 5.23493 5.36770 5.50692 5.59723 5.66741 5.75741 6.04422 6.14898 6.42018 6.44061 6.52052 6.89609 6.98041 7.40086 8.88138 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.010689 B = 0.008930 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.834612 B = 3134.644068 C = 4928.128685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.417 6.417 3 C 0.045 3.955 4 C 0.121 3.879 5 N -0.611 5.611 6 C 0.276 3.724 7 C -0.537 4.537 8 H 0.056 0.944 9 C 0.009 3.991 10 N -0.927 5.927 11 Si 0.955 3.045 12 H -0.270 1.270 13 H -0.286 1.286 14 H -0.269 1.269 15 C 0.214 3.786 16 C -0.176 4.176 17 C -0.060 4.060 18 C -0.136 4.136 19 C -0.002 4.002 20 C 0.281 3.719 21 N -0.473 5.473 22 C -0.169 4.169 23 H 0.059 0.941 24 H 0.044 0.956 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.118 0.882 30 H 0.017 0.983 31 H -0.001 1.001 32 H 0.263 0.737 33 H 0.152 0.848 34 H 0.172 0.828 35 H 0.149 0.851 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 16.943 3.109 18.458 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.337 6.337 3 C -0.033 4.033 4 C -0.002 4.002 5 N -0.317 5.317 6 C 0.154 3.846 7 C -0.576 4.576 8 H 0.074 0.926 9 C -0.189 4.189 10 N -0.568 5.568 11 Si 0.780 3.220 12 H -0.195 1.195 13 H -0.212 1.212 14 H -0.194 1.194 15 C 0.108 3.892 16 C -0.199 4.199 17 C -0.078 4.078 18 C -0.159 4.159 19 C -0.006 4.006 20 C -0.033 4.033 21 N -0.149 5.149 22 C -0.195 4.195 23 H 0.077 0.923 24 H 0.063 0.937 25 H 0.097 0.903 26 H 0.100 0.900 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.136 0.864 30 H 0.035 0.965 31 H 0.017 0.983 32 H 0.072 0.928 33 H 0.170 0.830 34 H 0.190 0.810 35 H 0.167 0.833 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.061 15.701 1.774 16.923 hybrid contribution 0.523 -1.113 0.441 1.307 sum -5.538 14.587 2.215 15.760 Atomic orbital electron populations 1.22821 0.80326 1.02843 1.00699 1.88034 1.20890 1.29270 1.95501 1.23211 0.94137 0.84532 1.01386 1.21621 0.92518 0.99845 0.86211 1.46914 1.69360 1.05738 1.09686 1.18665 0.94680 0.75994 0.95276 1.21892 0.98582 0.92214 1.44945 0.92624 1.25764 1.01062 0.96709 0.95406 1.70062 1.36249 1.01316 1.49141 0.85597 0.80188 0.77609 0.78565 1.19487 1.21217 1.19369 1.17990 0.92918 0.91623 0.86655 1.21193 1.07230 0.89904 1.01619 1.21154 0.95047 1.01185 0.90412 1.21081 1.03742 0.90631 1.00446 1.15842 1.04520 0.94261 0.86026 1.26193 0.92184 0.92107 0.92801 1.81149 1.11187 1.09346 1.13258 1.20638 1.06879 0.99104 0.92852 0.92254 0.93716 0.90347 0.89986 0.92623 0.91805 0.86434 0.96452 0.98300 0.92768 0.83016 0.81040 0.83339 0.88584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.71 11.01 113.37 1.25 1.96 16 2 O -0.42 -14.03 9.53 -148.98 -1.42 -15.45 16 3 C 0.04 1.15 6.28 71.98 0.45 1.60 16 4 C 0.12 3.62 5.56 86.38 0.48 4.10 16 5 N -0.61 -23.89 2.55 -701.76 -1.79 -25.68 16 6 C 0.28 14.11 4.73 85.63 0.40 14.52 16 7 C -0.54 -29.68 9.39 25.60 0.24 -29.44 16 8 H 0.06 3.04 7.81 -2.91 -0.02 3.02 16 9 C 0.01 0.53 5.46 84.65 0.46 1.00 16 10 N -0.93 -55.75 13.29 21.45 0.28 -55.46 16 11 Si 0.96 44.71 29.54 68.60 2.03 46.73 16 12 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 13 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 14 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 15 C 0.21 7.42 6.55 38.17 0.25 7.67 16 16 C -0.18 -4.21 9.20 22.46 0.21 -4.00 16 17 C -0.06 -1.13 10.02 22.21 0.22 -0.91 16 18 C -0.14 -3.14 9.75 22.56 0.22 -2.92 16 19 C 0.00 -0.08 5.73 -21.38 -0.12 -0.20 16 20 C 0.28 10.01 15.33 88.34 1.35 11.36 16 21 N -0.47 -18.44 18.54 19.00 0.35 -18.08 16 22 C -0.17 -6.54 8.91 22.68 0.20 -6.34 16 23 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 24 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 25 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 26 H 0.08 1.53 8.14 -2.38 -0.02 1.51 16 27 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.06 2.18 8.07 -2.39 -0.02 2.16 16 29 H 0.12 2.54 6.19 -2.38 -0.01 2.53 16 30 H 0.02 0.98 7.11 -2.39 -0.02 0.97 16 31 H 0.00 -0.05 6.19 -2.39 -0.01 -0.07 16 32 H 0.26 15.04 8.31 -92.71 -0.77 14.27 16 33 H 0.15 2.66 6.12 -2.91 -0.02 2.65 16 34 H 0.17 1.72 8.06 -2.91 -0.02 1.69 16 35 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.10 4.55 6.13 -2.91 -0.02 4.53 16 Total: -1.00 -70.24 315.45 6.15 -64.08 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.08 Total: 5.46 kcal Atomic # 6 Polarization: -7.22 SS G_CDS: 5.62 Total: -1.60 kcal Atomic # 7 Polarization: -98.07 SS G_CDS: -1.16 Total: -99.22 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -1.42 Total: -15.45 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -70.24 6.15 -64.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227618023.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.556 kcal (2) G-P(sol) polarization free energy of solvation -70.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.154 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds