Wall clock time and date at job start Mon Mar 30 2020 05:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47093 * 2 1 4 4 N 1.46503 * 109.47256 * 180.02562 * 3 2 1 5 5 C 1.39704 * 120.00340 * 179.97438 * 4 3 2 6 6 C 1.39030 * 120.44519 * 359.72269 * 5 4 3 7 7 N 1.31821 * 120.85286 * 179.67310 * 6 5 4 8 8 C 1.31774 * 121.88826 * 0.63933 * 7 6 5 9 9 C 1.39103 * 120.80117 * 359.65358 * 8 7 6 10 10 N 1.39327 * 120.47189 * 180.02562 * 9 8 7 11 11 C 1.36842 * 119.99536 * 0.02562 * 10 9 8 12 12 H 1.08000 * 120.00601 * 20.27234 * 11 10 9 13 13 C 1.38801 * 120.00370 * 200.26945 * 11 10 9 14 14 N 1.31592 * 119.99428 * 20.28937 * 13 11 10 15 15 Si 1.86793 * 120.00411 * 200.29389 * 13 11 10 16 16 H 1.48493 * 109.47412 * 93.41407 * 15 13 11 17 17 H 1.48506 * 109.47223 * 213.41669 * 15 13 11 18 18 H 1.48504 * 109.46890 * 333.41201 * 15 13 11 19 19 C 1.46495 * 120.00519 * 180.02562 * 10 9 8 20 20 C 1.47206 * 109.47265 * 84.17537 * 19 10 9 21 21 N 7.78703 * 156.75113 * 307.22439 * 2 1 3 22 22 C 1.39081 * 120.45097 * 179.97438 * 5 4 3 23 23 H 1.09002 * 109.46994 * 300.00082 * 1 2 3 24 24 H 1.08997 * 109.47458 * 59.99975 * 1 2 3 25 25 H 1.09001 * 109.47291 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46994 * 239.99917 * 2 1 3 27 27 H 1.09001 * 109.46989 * 120.00068 * 2 1 3 28 28 H 1.08997 * 109.47715 * 60.00168 * 3 2 1 29 29 H 1.09006 * 109.46827 * 299.99753 * 3 2 1 30 30 H 0.97003 * 119.99446 * 359.97438 * 4 3 2 31 31 H 1.08007 * 119.57448 * 359.97438 * 6 5 4 32 32 H 1.08009 * 119.60000 * 179.67193 * 8 7 6 33 33 H 0.96999 * 120.00186 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.47458 * 204.18058 * 19 10 9 35 35 H 1.09009 * 109.47004 * 324.17917 * 19 10 9 36 36 H 1.08006 * 120.85200 * 359.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2035 2.6524 -0.0013 6 6 3.5178 3.8618 -0.0071 7 7 4.1688 5.0080 -0.0014 8 6 5.4854 5.0608 -0.0023 9 6 6.2450 3.8955 -0.0024 10 7 7.6368 3.9593 -0.0029 11 6 8.2659 5.1746 -0.0028 12 1 7.7353 6.0575 0.3217 13 6 9.5862 5.2727 -0.4197 14 7 10.1099 4.3297 -1.1734 15 14 10.6196 6.7432 0.0892 16 1 11.3711 6.4154 1.3273 17 1 11.5762 7.0757 -0.9970 18 1 9.7332 7.9075 0.3417 19 6 8.4268 2.7256 -0.0035 20 6 8.5723 2.2368 -1.3844 21 7 8.6847 1.8594 -2.4475 22 6 5.5943 2.6633 -0.0013 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6766 1.9563 -0.8901 30 1 3.9899 0.6024 -0.0006 31 1 2.4378 3.8622 -0.0116 32 1 5.9809 6.0206 -0.0028 33 1 11.0327 4.3979 -1.4645 34 1 9.4124 2.9250 0.4171 35 1 7.9211 1.9701 0.5980 36 1 6.1554 1.7404 -0.0004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000228303018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:24 Heat of formation + Delta-G solvation = 72.843883 kcal Electronic energy + Delta-G solvation = -18750.975259 eV Core-core repulsion = 15849.376175 eV Total energy + Delta-G solvation = -2901.599083 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.40866 -37.23915 -36.08665 -34.72240 -33.13979 -32.38200 -29.73560 -28.92151 -27.21895 -25.57717 -24.19791 -22.47365 -21.48631 -20.46614 -18.04762 -17.16061 -16.50466 -15.79001 -15.52230 -15.42545 -15.18701 -14.25323 -14.21078 -13.58984 -13.42112 -13.06127 -12.99499 -12.70844 -12.18383 -12.08884 -11.90985 -11.79072 -11.38861 -11.25077 -11.16851 -11.11528 -11.08179 -10.61302 -10.55226 -10.26857 -10.02548 -9.87930 -8.84947 -8.53940 -7.34480 -6.73796 -6.54805 -3.96351 2.44184 2.45548 3.10982 3.15359 3.18786 3.64039 3.78645 4.00030 4.10528 4.66859 4.77747 4.84541 4.88894 4.99818 5.12105 5.30465 5.50833 5.51264 5.59849 5.72744 5.83454 5.88255 6.01714 6.03027 6.04270 6.12812 6.22204 6.39126 6.43428 6.91760 7.12075 7.28725 7.33798 7.63854 7.90584 8.12738 8.40300 8.80361 8.99003 9.23281 9.32330 10.43766 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.031261 B = 0.004852 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.482898 B = 5769.612942 C = 6465.472355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.136 4.136 3 C 0.129 3.871 4 N -0.751 5.751 5 C 0.214 3.786 6 C -0.089 4.089 7 N -0.416 5.416 8 C -0.028 4.028 9 C 0.204 3.796 10 N -0.435 5.435 11 C -0.315 4.315 12 H 0.108 0.892 13 C 0.030 3.970 14 N -0.871 5.871 15 Si 0.930 3.070 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.267 1.267 19 C 0.233 3.767 20 C 0.248 3.752 21 N -0.475 5.475 22 C -0.278 4.278 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.056 0.944 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.055 0.945 30 H 0.393 0.607 31 H 0.128 0.872 32 H 0.147 0.853 33 H 0.275 0.725 34 H 0.122 0.878 35 H 0.083 0.917 36 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.729 -6.448 5.794 13.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.173 4.173 3 C 0.004 3.996 4 N -0.383 5.383 5 C 0.110 3.890 6 C -0.250 4.250 7 N -0.123 5.123 8 C -0.197 4.197 9 C 0.085 3.915 10 N -0.123 5.123 11 C -0.442 4.442 12 H 0.126 0.874 13 C -0.175 4.175 14 N -0.507 5.507 15 Si 0.756 3.244 16 H -0.201 1.201 17 H -0.210 1.210 18 H -0.191 1.191 19 C 0.105 3.895 20 C -0.071 4.071 21 N -0.155 5.155 22 C -0.314 4.314 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.227 0.773 31 H 0.146 0.854 32 H 0.164 0.836 33 H 0.085 0.915 34 H 0.140 0.860 35 H 0.100 0.900 36 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.748 -6.194 4.125 12.264 hybrid contribution 1.378 -0.326 0.391 1.469 sum -8.370 -6.520 4.516 11.531 Atomic orbital electron populations 1.21676 0.94913 1.01830 1.02218 1.21705 0.96526 0.96603 1.02513 1.21256 0.80859 0.96425 1.01024 1.44465 1.04628 1.05301 1.83925 1.18414 0.90948 0.86719 0.92945 1.21420 0.98330 0.86480 1.18807 1.67147 1.09712 1.28548 1.06909 1.21896 0.88312 0.96959 1.12526 1.18693 0.84582 0.93856 0.94362 1.42439 1.00004 1.04599 1.65296 1.19703 0.95377 0.86546 1.42575 0.87435 1.25325 0.98191 0.99175 0.94848 1.69916 1.15726 1.34973 1.30039 0.85838 0.79495 0.80808 0.78239 1.20137 1.21031 1.19117 1.18617 0.99066 0.86482 0.85355 1.29255 0.91324 0.90932 0.95548 1.80771 1.10499 1.12271 1.11987 1.20091 0.92033 0.96531 1.22705 0.92420 0.92421 0.92513 0.91553 0.91537 0.92551 0.92632 0.77336 0.85440 0.83581 0.91465 0.86028 0.89961 0.86831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.14 -1.19 6.05 -26.73 -0.16 -1.35 16 3 C 0.13 1.48 4.93 -4.04 -0.02 1.46 16 4 N -0.75 -10.61 5.74 -58.54 -0.34 -10.95 16 5 C 0.21 3.89 6.67 -83.66 -0.56 3.33 16 6 C -0.09 -1.71 10.49 -17.26 -0.18 -1.89 16 7 N -0.42 -8.91 10.34 -12.85 -0.13 -9.05 16 8 C -0.03 -0.62 10.44 -17.26 -0.18 -0.80 16 9 C 0.20 4.43 6.48 -83.72 -0.54 3.89 16 10 N -0.44 -9.72 2.70 -116.15 -0.31 -10.03 16 11 C -0.31 -7.39 9.08 -15.11 -0.14 -7.53 16 12 H 0.11 2.46 6.14 -52.49 -0.32 2.14 16 13 C 0.03 0.69 4.87 -17.45 -0.08 0.60 16 14 N -0.87 -21.50 9.49 55.49 0.53 -20.97 16 15 Si 0.93 18.61 29.60 -169.99 -5.03 13.58 16 16 H -0.28 -5.42 7.11 56.52 0.40 -5.02 16 17 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 18 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 19 C 0.23 4.68 4.81 -6.83 -0.03 4.65 16 20 C 0.25 5.63 13.29 -20.83 -0.28 5.36 16 21 N -0.48 -11.69 18.52 42.07 0.78 -10.91 16 22 C -0.28 -5.44 9.08 -38.86 -0.35 -5.79 16 23 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.65 7.97 -51.93 -0.41 0.23 16 29 H 0.06 0.66 7.95 -51.93 -0.41 0.25 16 30 H 0.39 4.96 8.50 -40.82 -0.35 4.61 16 31 H 0.13 2.16 6.75 -52.48 -0.35 1.81 16 32 H 0.15 3.19 6.14 -52.48 -0.32 2.87 16 33 H 0.27 6.62 8.31 -40.82 -0.34 6.28 16 34 H 0.12 2.47 6.61 -51.93 -0.34 2.12 16 35 H 0.08 1.36 6.57 -51.92 -0.34 1.02 16 36 H 0.11 2.05 6.32 -52.48 -0.33 1.72 16 LS Contribution 305.77 15.07 4.61 4.61 Total: -1.00 -28.14 305.77 -6.50 -34.63 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -4.44 Total: 7.90 kcal Atomic # 6 Polarization: 3.36 SS G_CDS: -2.16 Total: 1.20 kcal Atomic # 7 Polarization: -62.44 SS G_CDS: 0.52 Total: -61.91 kcal Atomic # 14 Polarization: 18.61 SS G_CDS: -5.03 Total: 13.58 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.14 -6.50 -34.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228303018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.478 kcal (2) G-P(sol) polarization free energy of solvation -28.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.634 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds