Wall clock time and date at job start Mon Mar 30 2020 05:04:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47093 * 2 1 4 4 N 1.46503 * 109.47256 * 180.02562 * 3 2 1 5 5 C 1.39704 * 120.00340 * 179.97438 * 4 3 2 6 6 C 1.39030 * 120.44519 * 359.72269 * 5 4 3 7 7 N 1.31821 * 120.85286 * 179.67310 * 6 5 4 8 8 C 1.31774 * 121.88826 * 0.63933 * 7 6 5 9 9 C 1.39103 * 120.80117 * 359.65358 * 8 7 6 10 10 N 1.39327 * 120.47189 * 180.02562 * 9 8 7 11 11 C 1.36842 * 119.99536 * 0.02562 * 10 9 8 12 12 H 1.08000 * 120.00601 * 20.27234 * 11 10 9 13 13 C 1.38801 * 120.00370 * 200.26945 * 11 10 9 14 14 N 1.31592 * 119.99428 * 20.28937 * 13 11 10 15 15 Si 1.86793 * 120.00411 * 200.29389 * 13 11 10 16 16 H 1.48493 * 109.47412 * 93.41407 * 15 13 11 17 17 H 1.48506 * 109.47223 * 213.41669 * 15 13 11 18 18 H 1.48504 * 109.46890 * 333.41201 * 15 13 11 19 19 C 1.46495 * 120.00519 * 180.02562 * 10 9 8 20 20 C 1.47206 * 109.47265 * 84.17537 * 19 10 9 21 21 N 7.78703 * 156.75113 * 307.22439 * 2 1 3 22 22 C 1.39081 * 120.45097 * 179.97438 * 5 4 3 23 23 H 1.09002 * 109.46994 * 300.00082 * 1 2 3 24 24 H 1.08997 * 109.47458 * 59.99975 * 1 2 3 25 25 H 1.09001 * 109.47291 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.46994 * 239.99917 * 2 1 3 27 27 H 1.09001 * 109.46989 * 120.00068 * 2 1 3 28 28 H 1.08997 * 109.47715 * 60.00168 * 3 2 1 29 29 H 1.09006 * 109.46827 * 299.99753 * 3 2 1 30 30 H 0.97003 * 119.99446 * 359.97438 * 4 3 2 31 31 H 1.08007 * 119.57448 * 359.97438 * 6 5 4 32 32 H 1.08009 * 119.60000 * 179.67193 * 8 7 6 33 33 H 0.96999 * 120.00186 * 180.02562 * 14 13 11 34 34 H 1.08999 * 109.47458 * 204.18058 * 19 10 9 35 35 H 1.09009 * 109.47004 * 324.17917 * 19 10 9 36 36 H 1.08006 * 120.85200 * 359.97438 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.2035 2.6524 -0.0013 6 6 3.5178 3.8618 -0.0071 7 7 4.1688 5.0080 -0.0014 8 6 5.4854 5.0608 -0.0023 9 6 6.2450 3.8955 -0.0024 10 7 7.6368 3.9593 -0.0029 11 6 8.2659 5.1746 -0.0028 12 1 7.7353 6.0575 0.3217 13 6 9.5862 5.2727 -0.4197 14 7 10.1099 4.3297 -1.1734 15 14 10.6196 6.7432 0.0892 16 1 11.3711 6.4154 1.3273 17 1 11.5762 7.0757 -0.9970 18 1 9.7332 7.9075 0.3417 19 6 8.4268 2.7256 -0.0035 20 6 8.5723 2.2368 -1.3844 21 7 8.6847 1.8594 -2.4475 22 6 5.5943 2.6633 -0.0013 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 1.6767 1.9564 0.8899 29 1 1.6766 1.9563 -0.8901 30 1 3.9899 0.6024 -0.0006 31 1 2.4378 3.8622 -0.0116 32 1 5.9809 6.0206 -0.0028 33 1 11.0327 4.3979 -1.4645 34 1 9.4124 2.9250 0.4171 35 1 7.9211 1.9701 0.5980 36 1 6.1554 1.7404 -0.0004 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228303018.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:24 Heat of formation + Delta-G solvation = 56.339394 kcal Electronic energy + Delta-G solvation = -18751.690947 eV Core-core repulsion = 15849.376175 eV Total energy + Delta-G solvation = -2902.314771 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.97431 -38.74767 -37.37221 -36.47981 -34.22484 -34.06151 -31.21929 -30.42513 -28.78613 -26.76065 -25.69659 -23.93350 -22.56371 -21.85470 -19.71430 -18.73308 -18.15769 -17.11889 -16.99776 -16.69814 -16.33253 -15.79006 -15.68488 -15.12460 -14.81548 -14.65846 -14.07072 -13.87315 -13.63359 -13.52085 -13.43842 -13.15889 -12.98162 -12.85786 -12.49434 -12.32333 -12.15619 -11.93438 -11.90407 -11.84845 -11.66852 -11.17541 -10.57128 -10.14919 -8.89475 -8.37411 -8.14760 -5.75704 0.84616 0.87409 1.51698 1.52642 1.61604 1.95935 2.27991 2.38032 2.59277 2.94026 3.24603 3.34777 3.67148 3.99326 4.15556 4.18506 4.32590 4.40946 4.46811 4.57254 4.70076 4.77300 4.77734 4.83367 4.85196 4.96140 5.19659 5.31295 5.37353 5.42567 5.44160 5.59451 5.75771 6.05106 6.49766 6.66457 6.91098 7.04203 7.30300 7.59095 7.62390 8.67517 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.031261 B = 0.004852 C = 0.004330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 895.482898 B = 5769.612942 C = 6465.472355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.128 4.128 3 C 0.123 3.877 4 N -0.739 5.739 5 C 0.222 3.778 6 C -0.087 4.087 7 N -0.430 5.430 8 C -0.058 4.058 9 C 0.193 3.807 10 N -0.453 5.453 11 C -0.325 4.325 12 H 0.104 0.896 13 C -0.006 4.006 14 N -0.901 5.901 15 Si 0.989 3.011 16 H -0.267 1.267 17 H -0.295 1.295 18 H -0.265 1.265 19 C 0.235 3.765 20 C 0.261 3.739 21 N -0.516 5.516 22 C -0.280 4.280 23 H 0.060 0.940 24 H 0.056 0.944 25 H 0.067 0.933 26 H 0.067 0.933 27 H 0.073 0.927 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.403 0.597 31 H 0.152 0.848 32 H 0.136 0.864 33 H 0.270 0.730 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.368 -7.631 6.767 15.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.166 4.166 3 C -0.001 4.001 4 N -0.369 5.369 5 C 0.115 3.885 6 C -0.251 4.251 7 N -0.138 5.138 8 C -0.225 4.225 9 C 0.077 3.923 10 N -0.143 5.143 11 C -0.453 4.453 12 H 0.122 0.878 13 C -0.208 4.208 14 N -0.538 5.538 15 Si 0.814 3.186 16 H -0.192 1.192 17 H -0.222 1.222 18 H -0.189 1.189 19 C 0.108 3.892 20 C -0.057 4.057 21 N -0.197 5.197 22 C -0.317 4.317 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.086 0.914 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.238 0.762 31 H 0.169 0.831 32 H 0.154 0.846 33 H 0.080 0.920 34 H 0.137 0.863 35 H 0.139 0.861 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.429 -7.397 5.118 14.544 hybrid contribution 1.594 -0.051 0.098 1.598 sum -9.835 -7.449 5.215 13.394 Atomic orbital electron populations 1.21675 0.93769 1.02666 1.02416 1.21654 0.97386 0.94614 1.02930 1.21484 0.78959 0.98511 1.01124 1.44607 1.05878 1.04337 1.82111 1.18456 0.90710 0.87976 0.91402 1.21906 0.99526 0.86362 1.17261 1.67126 1.09528 1.29843 1.07294 1.21813 0.88815 0.97001 1.14826 1.18892 0.84635 0.94597 0.94183 1.42498 1.00255 1.04752 1.66778 1.19869 0.95696 0.87292 1.42424 0.87827 1.25949 0.98839 1.01229 0.94742 1.70012 1.15576 1.36611 1.31625 0.84944 0.77783 0.78266 0.77608 1.19208 1.22198 1.18948 1.18851 0.99344 0.86746 0.84305 1.29850 0.90072 0.89810 0.95940 1.80758 1.11928 1.13798 1.13206 1.20316 0.92843 0.96372 1.22146 0.92062 0.92443 0.91407 0.91449 0.90833 0.92070 0.92806 0.76171 0.83053 0.84619 0.92030 0.86308 0.86064 0.85200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.73 9.91 71.98 0.71 -1.01 16 2 C -0.13 -1.82 6.05 30.59 0.19 -1.63 16 3 C 0.12 2.41 4.93 86.38 0.43 2.84 16 4 N -0.74 -18.50 5.74 -339.14 -1.95 -20.44 16 5 C 0.22 7.51 6.67 38.28 0.26 7.77 16 6 C -0.09 -3.17 10.49 84.88 0.89 -2.28 16 7 N -0.43 -18.15 10.34 -194.56 -2.01 -20.16 16 8 C -0.06 -2.56 10.44 84.91 0.89 -1.68 16 9 C 0.19 8.33 6.48 38.43 0.25 8.58 16 10 N -0.45 -20.15 2.70 -521.39 -1.41 -21.56 16 11 C -0.33 -15.45 9.08 84.05 0.76 -14.68 16 12 H 0.10 4.87 6.14 -2.91 -0.02 4.85 16 13 C -0.01 -0.30 4.87 84.86 0.41 0.12 16 14 N -0.90 -45.04 9.49 21.65 0.21 -44.83 16 15 Si 0.99 38.58 29.60 68.60 2.03 40.61 16 16 H -0.27 -9.94 7.11 99.48 0.71 -9.24 16 17 H -0.30 -11.96 7.11 99.48 0.71 -11.25 16 18 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 19 C 0.23 9.28 4.81 84.58 0.41 9.69 16 20 C 0.26 11.79 13.29 89.47 1.19 12.98 16 21 N -0.52 -25.46 18.52 19.98 0.37 -25.09 16 22 C -0.28 -10.47 9.08 22.74 0.21 -10.27 16 23 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 24 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 25 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 28 H 0.06 1.19 7.97 -2.39 -0.02 1.17 16 29 H 0.05 1.11 7.95 -2.38 -0.02 1.09 16 30 H 0.40 8.77 8.50 -92.71 -0.79 7.98 16 31 H 0.15 4.70 6.75 -2.91 -0.02 4.68 16 32 H 0.14 6.14 6.14 -2.91 -0.02 6.13 16 33 H 0.27 13.24 8.31 -92.71 -0.77 12.47 16 34 H 0.12 4.79 6.61 -2.39 -0.02 4.78 16 35 H 0.12 3.75 6.57 -2.38 -0.02 3.74 16 36 H 0.13 4.35 6.32 -2.91 -0.02 4.33 16 Total: -1.00 -60.05 305.77 4.15 -55.90 By element: Atomic # 1 Polarization: 24.83 SS G_CDS: 0.32 Total: 25.15 kcal Atomic # 6 Polarization: 3.84 SS G_CDS: 6.58 Total: 10.42 kcal Atomic # 7 Polarization: -127.29 SS G_CDS: -4.79 Total: -132.08 kcal Atomic # 14 Polarization: 38.58 SS G_CDS: 2.03 Total: 40.61 kcal Total: -60.05 4.15 -55.90 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228303018.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.242 kcal (2) G-P(sol) polarization free energy of solvation -60.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.903 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds