Wall clock time and date at job start Mon Mar 30 2020 04:56:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.46496 * 120.00002 * 2 1
4 4 C 1.50702 * 109.46647 * 269.99787 * 3 2 1
5 5 H 1.08000 * 120.00194 * 0.02562 * 4 3 2
6 6 C 1.37882 * 119.99748 * 180.02562 * 4 3 2
7 7 N 1.31514 * 120.00041 * 179.97438 * 6 4 3
8 8 Si 1.86801 * 120.00031 * 359.97438 * 6 4 3
9 9 H 1.48504 * 109.46841 * 90.00214 * 8 6 4
10 10 H 1.48494 * 109.47047 * 210.00066 * 8 6 4
11 11 H 1.48500 * 109.47141 * 330.00070 * 8 6 4
12 12 C 1.34774 * 119.99699 * 179.97438 * 2 1 3
13 13 O 1.21551 * 119.99965 * 185.11384 * 12 2 1
14 14 C 1.47862 * 120.00469 * 4.84110 * 12 2 1
15 15 C 1.39615 * 120.04142 * 320.65610 * 14 12 2
16 16 C 1.37922 * 119.69288 * 179.73861 * 15 14 12
17 17 C 1.38346 * 120.35433 * 0.53994 * 16 15 14
18 18 C 1.38718 * 120.70048 * 359.73680 * 17 16 15
19 19 C 1.39193 * 120.04728 * 140.93081 * 14 12 2
20 20 N 1.39638 * 111.63761 * 180.02562 * 18 17 16
21 21 C 1.46524 * 110.08625 * 359.97438 * 20 18 17
22 22 C 1.51274 * 130.80215 * 179.73696 * 17 16 15
23 23 H 1.09002 * 109.47545 * 265.70285 * 1 2 3
24 24 H 1.08998 * 109.47238 * 25.70262 * 1 2 3
25 25 H 1.09002 * 109.47260 * 145.69893 * 1 2 3
26 26 H 1.09000 * 109.47407 * 29.99483 * 3 2 1
27 27 H 1.09000 * 109.47018 * 149.99878 * 3 2 1
28 28 H 0.97003 * 120.00108 * 179.97438 * 7 6 4
29 29 H 1.08006 * 120.14929 * 359.97438 * 15 14 12
30 30 H 1.08004 * 119.82507 * 180.27224 * 16 15 14
31 31 H 1.07994 * 119.91824 * 359.97438 * 19 14 12
32 32 H 0.96996 * 124.95816 * 180.02562 * 20 18 17
33 33 H 1.09008 * 110.29301 * 118.93754 * 21 20 18
34 34 H 1.09002 * 110.29289 * 240.96969 * 21 20 18
35 35 H 1.08996 * 110.41707 * 61.22423 * 22 17 16
36 36 H 1.09008 * 110.51584 * 298.81619 * 22 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4486 1.7036 -1.4209
5 1 2.0974 1.0960 -2.2417
6 6 3.1269 2.8773 -1.6729
7 7 3.3465 3.2566 -2.9128
8 14 3.7338 3.9287 -0.2531
9 1 5.1070 3.5068 0.1235
10 1 3.7498 5.3552 -0.6651
11 1 2.8273 3.7597 0.9109
12 6 2.1388 -1.1672 0.0005
13 8 3.3507 -1.1693 0.0944
14 6 1.4035 -2.4455 -0.1070
15 6 0.1919 -2.6136 0.5661
16 6 -0.4907 -3.8071 0.4564
17 6 0.0245 -4.8396 -0.3068
18 6 1.2298 -4.6915 -0.9773
19 6 1.9211 -3.4849 -0.8746
20 7 1.5694 -5.8452 -1.6869
21 6 0.5386 -6.8703 -1.5038
22 6 -0.5112 -6.2270 -0.5834
23 1 -0.3634 -0.0770 1.0248
24 1 -0.3633 0.9260 -0.4457
25 1 -0.3634 -0.8489 -0.5791
26 1 1.6084 2.0284 0.5137
27 1 3.1499 1.1383 0.5139
28 1 3.8234 4.0826 -3.0901
29 1 -0.2109 -1.8114 1.1667
30 1 -1.4303 -3.9379 0.9726
31 1 2.8602 -3.3564 -1.3920
32 1 2.3712 -5.9526 -2.2221
33 1 0.0910 -7.1318 -2.4628
34 1 0.9653 -7.7556 -1.0325
35 1 -1.4752 -6.1685 -1.0889
36 1 -0.6025 -6.7931 0.3436
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000228552608.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:56:17
Heat of formation + Delta-G solvation = 13.113979 kcal
Electronic energy + Delta-G solvation = -18941.184474 eV
Core-core repulsion = 16004.702556 eV
Total energy + Delta-G solvation = -2936.481917 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.32 seconds
Orbital eigenvalues (eV)
-40.42909 -38.91100 -35.92645 -34.94668 -32.52066 -31.97125 -29.86125 -28.85947
-28.01931 -26.00377 -23.78596 -22.30502 -21.89715 -21.26030 -18.88316 -17.43939
-16.90587 -16.24506 -15.74616 -15.68536 -15.36701 -14.70809 -14.21656 -13.91803
-13.56602 -13.46888 -12.77929 -12.69722 -12.46454 -12.30523 -12.21178 -12.11094
-12.05116 -11.56421 -11.21646 -10.91953 -10.88856 -10.50130 -10.17305 -9.99550
-9.52591 -9.09340 -8.62779 -8.56626 -7.67119 -7.33008 -6.06696 -4.05648
1.23369 1.65654 3.23819 3.31615 3.37613 3.39474 3.42443 3.84714
4.14251 4.41845 4.51539 4.55041 4.89443 4.99769 5.09691 5.26719
5.30924 5.37930 5.46419 5.61733 5.70583 5.74993 5.80194 5.89871
6.01052 6.24338 6.33792 6.53722 6.59035 6.63404 6.79480 6.98626
7.19368 7.36624 7.62638 7.75389 8.25278 8.48918 8.93458 8.99548
9.53411 11.06672
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.038364 B = 0.004584 C = 0.004384
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 729.681518 B = 6106.192371 C = 6385.028003
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.078 3.922
2 N -0.589 5.589
3 C 0.214 3.786
4 C -0.530 4.530
5 H 0.075 0.925
6 C 0.072 3.928
7 N -0.898 5.898
8 Si 0.877 3.123
9 H -0.273 1.273
10 H -0.285 1.285
11 H -0.265 1.265
12 C 0.550 3.450
13 O -0.538 6.538
14 C -0.069 4.069
15 C -0.148 4.148
16 C -0.070 4.070
17 C -0.165 4.165
18 C 0.187 3.813
19 C -0.126 4.126
20 N -0.749 5.749
21 C 0.120 3.880
22 C -0.083 4.083
23 H 0.048 0.952
24 H 0.075 0.925
25 H 0.069 0.931
26 H 0.032 0.968
27 H 0.039 0.961
28 H 0.264 0.736
29 H 0.136 0.864
30 H 0.122 0.878
31 H 0.126 0.874
32 H 0.412 0.588
33 H 0.064 0.936
34 H 0.064 0.936
35 H 0.082 0.918
36 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -10.597 -18.025 5.840 21.710
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.066 4.066
2 N -0.320 5.320
3 C 0.094 3.906
4 C -0.569 4.569
5 H 0.093 0.907
6 C -0.130 4.130
7 N -0.536 5.536
8 Si 0.704 3.296
9 H -0.199 1.199
10 H -0.211 1.211
11 H -0.190 1.190
12 C 0.337 3.663
13 O -0.416 6.416
14 C -0.073 4.073
15 C -0.168 4.168
16 C -0.089 4.089
17 C -0.170 4.170
18 C 0.084 3.916
19 C -0.150 4.150
20 N -0.383 5.383
21 C -0.004 4.004
22 C -0.120 4.120
23 H 0.066 0.934
24 H 0.093 0.907
25 H 0.088 0.912
26 H 0.050 0.950
27 H 0.057 0.943
28 H 0.074 0.926
29 H 0.153 0.847
30 H 0.140 0.860
31 H 0.144 0.856
32 H 0.250 0.750
33 H 0.082 0.918
34 H 0.082 0.918
35 H 0.101 0.899
36 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -9.926 -17.989 5.743 21.333
hybrid contribution 0.686 0.609 0.205 0.940
sum -9.240 -17.379 5.948 20.562
Atomic orbital electron populations
1.22004 0.80910 1.03544 1.00097 1.47718 1.06418 1.06816 1.71051
1.19717 0.92641 0.79832 0.98445 1.21351 1.36994 1.07263 0.91260
0.90715 1.24857 0.95199 0.97323 0.95612 1.69901 1.41479 1.23571
1.18674 0.86838 0.80177 0.79694 0.82927 1.19867 1.21065 1.18995
1.18215 0.87068 0.83430 0.77573 1.90739 1.13666 1.87146 1.50023
1.19727 0.95149 0.94232 0.98203 1.21337 0.94859 0.98212 1.02402
1.20204 0.99352 0.91666 0.97685 1.19975 0.96839 0.96656 1.03568
1.18167 0.93579 0.87703 0.92129 1.20339 1.00973 0.90746 1.02915
1.44673 1.25818 1.12373 1.55456 1.21724 0.88577 0.91085 0.99053
1.21015 0.98583 0.92691 0.99712 0.93387 0.90654 0.91216 0.94996
0.94304 0.92563 0.84657 0.85958 0.85562 0.75028 0.91783 0.91818
0.89917 0.89967
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 1.27 8.88 59.85 0.53 1.80 16
2 N -0.59 -12.81 2.86 -184.07 -0.53 -13.34 16
3 C 0.21 5.39 4.25 -5.19 -0.02 5.37 16
4 C -0.53 -15.57 9.94 -34.44 -0.34 -15.91 16
5 H 0.07 2.41 8.06 -52.49 -0.42 1.98 16
6 C 0.07 2.14 5.47 -17.82 -0.10 2.04 16
7 N -0.90 -28.02 13.96 55.43 0.77 -27.24 16
8 Si 0.88 21.83 27.47 -169.99 -4.67 17.16 16
9 H -0.27 -6.84 7.11 56.52 0.40 -6.44 16
10 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16
11 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16
12 C 0.55 12.23 7.35 -12.32 -0.09 12.14 16
13 O -0.54 -14.09 16.46 5.32 0.09 -14.01 16
14 C -0.07 -1.23 5.22 -105.09 -0.55 -1.78 16
15 C -0.15 -2.09 7.56 -39.18 -0.30 -2.39 16
16 C -0.07 -0.84 10.02 -39.66 -0.40 -1.24 16
17 C -0.17 -2.02 6.23 -104.12 -0.65 -2.67 16
18 C 0.19 2.60 7.02 -83.68 -0.59 2.01 16
19 C -0.13 -2.13 9.65 -38.78 -0.37 -2.50 16
20 N -0.75 -8.15 6.53 -58.15 -0.38 -8.53 16
21 C 0.12 0.97 7.96 -3.65 -0.03 0.95 16
22 C -0.08 -0.71 6.94 -27.22 -0.19 -0.89 16
23 H 0.05 0.63 6.90 -51.93 -0.36 0.27 16
24 H 0.07 1.24 8.04 -51.93 -0.42 0.83 16
25 H 0.07 1.04 5.81 -51.93 -0.30 0.74 16
26 H 0.03 0.76 7.13 -51.93 -0.37 0.39 16
27 H 0.04 1.04 6.78 -51.93 -0.35 0.69 16
28 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16
29 H 0.14 1.69 5.32 -52.48 -0.28 1.42 16
30 H 0.12 1.09 8.06 -52.48 -0.42 0.67 16
31 H 0.13 2.23 8.05 -52.49 -0.42 1.80 16
32 H 0.41 3.86 8.96 -40.82 -0.37 3.49 16
33 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16
34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16
35 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16
36 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16
LS Contribution 298.49 15.07 4.50 4.50
Total: -1.00 -35.49 298.49 -7.88 -43.36
By element:
Atomic # 1 Polarization: 5.74 SS G_CDS: -4.57 Total: 1.16 kcal
Atomic # 6 Polarization: 0.02 SS G_CDS: -3.09 Total: -3.07 kcal
Atomic # 7 Polarization: -48.98 SS G_CDS: -0.13 Total: -49.11 kcal
Atomic # 8 Polarization: -14.09 SS G_CDS: 0.09 Total: -14.01 kcal
Atomic # 14 Polarization: 21.83 SS G_CDS: -4.67 Total: 17.16 kcal
Total LS contribution 4.50 Total: 4.50 kcal
Total: -35.49 -7.88 -43.36 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000228552608.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 56.478 kcal
(2) G-P(sol) polarization free energy of solvation -35.486 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.992 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.878 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.364 kcal
(6) G-S(sol) free energy of system = (1) + (5) 13.114 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.32 seconds