Wall clock time and date at job start Mon Mar 30 2020 04:56:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46496 * 120.00002 * 2 1 4 4 C 1.50702 * 109.46647 * 269.99787 * 3 2 1 5 5 H 1.08000 * 120.00194 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99748 * 180.02562 * 4 3 2 7 7 N 1.31514 * 120.00041 * 179.97438 * 6 4 3 8 8 Si 1.86801 * 120.00031 * 359.97438 * 6 4 3 9 9 H 1.48504 * 109.46841 * 90.00214 * 8 6 4 10 10 H 1.48494 * 109.47047 * 210.00066 * 8 6 4 11 11 H 1.48500 * 109.47141 * 330.00070 * 8 6 4 12 12 C 1.34774 * 119.99699 * 179.97438 * 2 1 3 13 13 O 1.21551 * 119.99965 * 185.11384 * 12 2 1 14 14 C 1.47862 * 120.00469 * 4.84110 * 12 2 1 15 15 C 1.39615 * 120.04142 * 320.65610 * 14 12 2 16 16 C 1.37922 * 119.69288 * 179.73861 * 15 14 12 17 17 C 1.38346 * 120.35433 * 0.53994 * 16 15 14 18 18 C 1.38718 * 120.70048 * 359.73680 * 17 16 15 19 19 C 1.39193 * 120.04728 * 140.93081 * 14 12 2 20 20 N 1.39638 * 111.63761 * 180.02562 * 18 17 16 21 21 C 1.46524 * 110.08625 * 359.97438 * 20 18 17 22 22 C 1.51274 * 130.80215 * 179.73696 * 17 16 15 23 23 H 1.09002 * 109.47545 * 265.70285 * 1 2 3 24 24 H 1.08998 * 109.47238 * 25.70262 * 1 2 3 25 25 H 1.09002 * 109.47260 * 145.69893 * 1 2 3 26 26 H 1.09000 * 109.47407 * 29.99483 * 3 2 1 27 27 H 1.09000 * 109.47018 * 149.99878 * 3 2 1 28 28 H 0.97003 * 120.00108 * 179.97438 * 7 6 4 29 29 H 1.08006 * 120.14929 * 359.97438 * 15 14 12 30 30 H 1.08004 * 119.82507 * 180.27224 * 16 15 14 31 31 H 1.07994 * 119.91824 * 359.97438 * 19 14 12 32 32 H 0.96996 * 124.95816 * 180.02562 * 20 18 17 33 33 H 1.09008 * 110.29301 * 118.93754 * 21 20 18 34 34 H 1.09002 * 110.29289 * 240.96969 * 21 20 18 35 35 H 1.08996 * 110.41707 * 61.22423 * 22 17 16 36 36 H 1.09008 * 110.51584 * 298.81619 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7036 -1.4209 5 1 2.0974 1.0960 -2.2417 6 6 3.1269 2.8773 -1.6729 7 7 3.3465 3.2566 -2.9128 8 14 3.7338 3.9287 -0.2531 9 1 5.1070 3.5068 0.1235 10 1 3.7498 5.3552 -0.6651 11 1 2.8273 3.7597 0.9109 12 6 2.1388 -1.1672 0.0005 13 8 3.3507 -1.1693 0.0944 14 6 1.4035 -2.4455 -0.1070 15 6 0.1919 -2.6136 0.5661 16 6 -0.4907 -3.8071 0.4564 17 6 0.0245 -4.8396 -0.3068 18 6 1.2298 -4.6915 -0.9773 19 6 1.9211 -3.4849 -0.8746 20 7 1.5694 -5.8452 -1.6869 21 6 0.5386 -6.8703 -1.5038 22 6 -0.5112 -6.2270 -0.5834 23 1 -0.3634 -0.0770 1.0248 24 1 -0.3633 0.9260 -0.4457 25 1 -0.3634 -0.8489 -0.5791 26 1 1.6084 2.0284 0.5137 27 1 3.1499 1.1383 0.5139 28 1 3.8234 4.0826 -3.0901 29 1 -0.2109 -1.8114 1.1667 30 1 -1.4303 -3.9379 0.9726 31 1 2.8602 -3.3564 -1.3920 32 1 2.3712 -5.9526 -2.2221 33 1 0.0910 -7.1318 -2.4628 34 1 0.9653 -7.7556 -1.0325 35 1 -1.4752 -6.1685 -1.0889 36 1 -0.6025 -6.7931 0.3436 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000228552608.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:17 Heat of formation + Delta-G solvation = -12.788810 kcal Electronic energy + Delta-G solvation = -18942.307703 eV Core-core repulsion = 16004.702556 eV Total energy + Delta-G solvation = -2937.605146 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.57163 -40.36248 -37.05003 -36.71537 -34.69982 -32.95085 -31.31890 -29.85035 -29.57434 -27.51847 -25.33683 -23.62716 -22.96229 -22.37486 -20.38877 -19.16775 -18.62317 -17.49026 -17.32343 -16.70418 -16.37462 -16.34958 -15.83445 -15.50192 -14.79218 -14.52731 -14.52300 -14.13845 -13.86381 -13.69688 -13.48974 -13.24376 -12.95719 -12.90135 -12.78924 -12.48769 -12.29754 -12.10663 -11.95698 -11.76560 -11.02955 -10.85709 -10.75893 -9.77513 -9.42722 -8.36226 -8.26748 -6.42470 0.04945 0.59672 1.32276 1.37102 1.45813 1.78850 2.23859 2.30281 2.57945 2.88792 2.97967 3.60061 3.74646 3.82485 4.12942 4.30381 4.34676 4.43095 4.49169 4.52261 4.63847 4.76920 4.79699 4.88058 4.94807 4.97060 5.09014 5.15871 5.31427 5.42348 5.49711 5.53365 5.57412 5.74297 6.20882 6.23155 6.58330 6.59834 6.88475 7.15945 7.30862 8.80975 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.038364 B = 0.004584 C = 0.004384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.681518 B = 6106.192371 C = 6385.028003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.072 3.928 2 N -0.597 5.597 3 C 0.222 3.778 4 C -0.542 4.542 5 H 0.025 0.975 6 C 0.011 3.989 7 N -0.945 5.945 8 Si 0.951 3.049 9 H -0.277 1.277 10 H -0.272 1.272 11 H -0.235 1.235 12 C 0.540 3.460 13 O -0.597 6.597 14 C -0.096 4.096 15 C -0.144 4.144 16 C -0.059 4.059 17 C -0.159 4.159 18 C 0.178 3.822 19 C -0.159 4.159 20 N -0.751 5.751 21 C 0.113 3.887 22 C -0.080 4.080 23 H 0.092 0.908 24 H 0.070 0.930 25 H 0.083 0.917 26 H 0.059 0.941 27 H 0.020 0.980 28 H 0.270 0.730 29 H 0.154 0.846 30 H 0.167 0.833 31 H 0.095 0.905 32 H 0.415 0.585 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.579 -19.611 8.104 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 N -0.326 5.326 3 C 0.100 3.900 4 C -0.580 4.580 5 H 0.043 0.957 6 C -0.187 4.187 7 N -0.585 5.585 8 Si 0.773 3.227 9 H -0.203 1.203 10 H -0.197 1.197 11 H -0.158 1.158 12 C 0.330 3.670 13 O -0.480 6.480 14 C -0.100 4.100 15 C -0.164 4.164 16 C -0.077 4.077 17 C -0.164 4.164 18 C 0.074 3.926 19 C -0.183 4.183 20 N -0.384 5.384 21 C -0.010 4.010 22 C -0.117 4.117 23 H 0.110 0.890 24 H 0.089 0.911 25 H 0.102 0.898 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.079 0.921 29 H 0.172 0.828 30 H 0.184 0.816 31 H 0.113 0.887 32 H 0.253 0.747 33 H 0.099 0.901 34 H 0.101 0.899 35 H 0.123 0.877 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -12.975 -19.614 7.998 24.841 hybrid contribution 1.563 0.933 -0.623 1.924 sum -11.412 -18.682 7.375 23.101 Atomic orbital electron populations 1.22336 0.77500 1.04001 1.03074 1.47830 1.08640 1.05585 1.70558 1.19430 0.92966 0.82132 0.95512 1.21556 1.37232 1.07000 0.92260 0.95690 1.25890 0.95054 0.98855 0.98858 1.70054 1.42541 1.24522 1.21403 0.85667 0.79576 0.77694 0.79733 1.20258 1.19669 1.15764 1.19049 0.86765 0.85070 0.76125 1.90676 1.16346 1.88190 1.52745 1.19443 0.97042 0.92228 1.01260 1.21516 0.93245 0.99936 1.01741 1.20642 1.00229 0.90176 0.96677 1.20569 0.95651 0.98522 1.01674 1.18292 0.94142 0.87402 0.92725 1.20214 1.00876 0.92703 1.04511 1.44929 1.26638 1.12106 1.54717 1.22033 0.87930 0.90745 1.00311 1.21183 0.99268 0.90143 1.01059 0.89031 0.91097 0.89830 0.92317 0.96173 0.92137 0.82822 0.81566 0.88706 0.74735 0.90062 0.89901 0.87714 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 2.25 8.88 127.77 1.13 3.39 16 2 N -0.60 -26.45 2.86 -854.57 -2.44 -28.89 16 3 C 0.22 11.36 4.25 85.63 0.36 11.72 16 4 C -0.54 -33.29 9.94 25.60 0.25 -33.03 16 5 H 0.02 1.72 8.06 -2.91 -0.02 1.70 16 6 C 0.01 0.70 5.47 84.66 0.46 1.16 16 7 N -0.95 -61.19 13.96 21.45 0.30 -60.89 16 8 Si 0.95 45.40 27.47 68.60 1.88 47.29 16 9 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16 10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 11 H -0.23 -9.97 6.54 99.48 0.65 -9.32 16 12 C 0.54 25.28 7.35 86.79 0.64 25.92 16 13 O -0.60 -33.70 16.46 -3.88 -0.06 -33.77 16 14 C -0.10 -3.52 5.22 -20.17 -0.11 -3.62 16 15 C -0.14 -3.76 7.56 22.53 0.17 -3.59 16 16 C -0.06 -1.17 10.02 22.22 0.22 -0.95 16 17 C -0.16 -3.35 6.23 -19.54 -0.12 -3.47 16 18 C 0.18 4.84 7.02 38.30 0.27 5.11 16 19 C -0.16 -5.68 9.65 22.79 0.22 -5.46 16 20 N -0.75 -15.39 6.53 -337.88 -2.21 -17.59 16 21 C 0.11 1.42 7.96 86.62 0.69 2.11 16 22 C -0.08 -0.97 6.94 30.28 0.21 -0.76 16 23 H 0.09 2.07 6.90 -2.39 -0.02 2.06 16 24 H 0.07 2.26 8.04 -2.39 -0.02 2.24 16 25 H 0.08 2.37 5.81 -2.39 -0.01 2.36 16 26 H 0.06 2.69 7.13 -2.39 -0.02 2.67 16 27 H 0.02 1.11 6.78 -2.39 -0.02 1.09 16 28 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 29 H 0.15 3.32 5.32 -2.91 -0.02 3.30 16 30 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16 31 H 0.09 3.80 8.05 -2.91 -0.02 3.78 16 32 H 0.41 7.72 8.96 -92.71 -0.83 6.89 16 33 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.11 0.88 8.14 -2.38 -0.02 0.87 16 Total: -1.00 -84.42 298.49 2.10 -82.32 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.22 Total: 13.01 kcal Atomic # 6 Polarization: -5.88 SS G_CDS: 4.41 Total: -1.47 kcal Atomic # 7 Polarization: -103.03 SS G_CDS: -4.35 Total: -107.38 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -0.06 Total: -33.77 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.29 kcal Total: -84.42 2.10 -82.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000228552608.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.534 kcal (2) G-P(sol) polarization free energy of solvation -84.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.323 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds