Wall clock time and date at job start Mon Mar 30 2020 04:56:17
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46498 * 1
3 3 C 1.46496 * 120.00002 * 2 1
4 4 C 1.50702 * 109.46647 * 269.99787 * 3 2 1
5 5 H 1.08000 * 120.00194 * 0.02562 * 4 3 2
6 6 C 1.37882 * 119.99748 * 180.02562 * 4 3 2
7 7 N 1.31514 * 120.00041 * 179.97438 * 6 4 3
8 8 Si 1.86801 * 120.00031 * 359.97438 * 6 4 3
9 9 H 1.48504 * 109.46841 * 90.00214 * 8 6 4
10 10 H 1.48494 * 109.47047 * 210.00066 * 8 6 4
11 11 H 1.48500 * 109.47141 * 330.00070 * 8 6 4
12 12 C 1.34774 * 119.99699 * 179.97438 * 2 1 3
13 13 O 1.21551 * 119.99965 * 185.11384 * 12 2 1
14 14 C 1.47862 * 120.00469 * 4.84110 * 12 2 1
15 15 C 1.39615 * 120.04142 * 320.65610 * 14 12 2
16 16 C 1.37922 * 119.69288 * 179.73861 * 15 14 12
17 17 C 1.38346 * 120.35433 * 0.53994 * 16 15 14
18 18 C 1.38718 * 120.70048 * 359.73680 * 17 16 15
19 19 C 1.39193 * 120.04728 * 140.93081 * 14 12 2
20 20 N 1.39638 * 111.63761 * 180.02562 * 18 17 16
21 21 C 1.46524 * 110.08625 * 359.97438 * 20 18 17
22 22 C 1.51274 * 130.80215 * 179.73696 * 17 16 15
23 23 H 1.09002 * 109.47545 * 265.70285 * 1 2 3
24 24 H 1.08998 * 109.47238 * 25.70262 * 1 2 3
25 25 H 1.09002 * 109.47260 * 145.69893 * 1 2 3
26 26 H 1.09000 * 109.47407 * 29.99483 * 3 2 1
27 27 H 1.09000 * 109.47018 * 149.99878 * 3 2 1
28 28 H 0.97003 * 120.00108 * 179.97438 * 7 6 4
29 29 H 1.08006 * 120.14929 * 359.97438 * 15 14 12
30 30 H 1.08004 * 119.82507 * 180.27224 * 16 15 14
31 31 H 1.07994 * 119.91824 * 359.97438 * 19 14 12
32 32 H 0.96996 * 124.95816 * 180.02562 * 20 18 17
33 33 H 1.09008 * 110.29301 * 118.93754 * 21 20 18
34 34 H 1.09002 * 110.29289 * 240.96969 * 21 20 18
35 35 H 1.08996 * 110.41707 * 61.22423 * 22 17 16
36 36 H 1.09008 * 110.51584 * 298.81619 * 22 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4486 1.7036 -1.4209
5 1 2.0974 1.0960 -2.2417
6 6 3.1269 2.8773 -1.6729
7 7 3.3465 3.2566 -2.9128
8 14 3.7338 3.9287 -0.2531
9 1 5.1070 3.5068 0.1235
10 1 3.7498 5.3552 -0.6651
11 1 2.8273 3.7597 0.9109
12 6 2.1388 -1.1672 0.0005
13 8 3.3507 -1.1693 0.0944
14 6 1.4035 -2.4455 -0.1070
15 6 0.1919 -2.6136 0.5661
16 6 -0.4907 -3.8071 0.4564
17 6 0.0245 -4.8396 -0.3068
18 6 1.2298 -4.6915 -0.9773
19 6 1.9211 -3.4849 -0.8746
20 7 1.5694 -5.8452 -1.6869
21 6 0.5386 -6.8703 -1.5038
22 6 -0.5112 -6.2270 -0.5834
23 1 -0.3634 -0.0770 1.0248
24 1 -0.3633 0.9260 -0.4457
25 1 -0.3634 -0.8489 -0.5791
26 1 1.6084 2.0284 0.5137
27 1 3.1499 1.1383 0.5139
28 1 3.8234 4.0826 -3.0901
29 1 -0.2109 -1.8114 1.1667
30 1 -1.4303 -3.9379 0.9726
31 1 2.8602 -3.3564 -1.3920
32 1 2.3712 -5.9526 -2.2221
33 1 0.0910 -7.1318 -2.4628
34 1 0.9653 -7.7556 -1.0325
35 1 -1.4752 -6.1685 -1.0889
36 1 -0.6025 -6.7931 0.3436
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000228552608.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:56:17
Heat of formation + Delta-G solvation = -12.788810 kcal
Electronic energy + Delta-G solvation = -18942.307703 eV
Core-core repulsion = 16004.702556 eV
Total energy + Delta-G solvation = -2937.605146 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-41.57163 -40.36248 -37.05003 -36.71537 -34.69982 -32.95085 -31.31890 -29.85035
-29.57434 -27.51847 -25.33683 -23.62716 -22.96229 -22.37486 -20.38877 -19.16775
-18.62317 -17.49026 -17.32343 -16.70418 -16.37462 -16.34958 -15.83445 -15.50192
-14.79218 -14.52731 -14.52300 -14.13845 -13.86381 -13.69688 -13.48974 -13.24376
-12.95719 -12.90135 -12.78924 -12.48769 -12.29754 -12.10663 -11.95698 -11.76560
-11.02955 -10.85709 -10.75893 -9.77513 -9.42722 -8.36226 -8.26748 -6.42470
0.04945 0.59672 1.32276 1.37102 1.45813 1.78850 2.23859 2.30281
2.57945 2.88792 2.97967 3.60061 3.74646 3.82485 4.12942 4.30381
4.34676 4.43095 4.49169 4.52261 4.63847 4.76920 4.79699 4.88058
4.94807 4.97060 5.09014 5.15871 5.31427 5.42348 5.49711 5.53365
5.57412 5.74297 6.20882 6.23155 6.58330 6.59834 6.88475 7.15945
7.30862 8.80975
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.038364 B = 0.004584 C = 0.004384
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 729.681518 B = 6106.192371 C = 6385.028003
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.072 3.928
2 N -0.597 5.597
3 C 0.222 3.778
4 C -0.542 4.542
5 H 0.025 0.975
6 C 0.011 3.989
7 N -0.945 5.945
8 Si 0.951 3.049
9 H -0.277 1.277
10 H -0.272 1.272
11 H -0.235 1.235
12 C 0.540 3.460
13 O -0.597 6.597
14 C -0.096 4.096
15 C -0.144 4.144
16 C -0.059 4.059
17 C -0.159 4.159
18 C 0.178 3.822
19 C -0.159 4.159
20 N -0.751 5.751
21 C 0.113 3.887
22 C -0.080 4.080
23 H 0.092 0.908
24 H 0.070 0.930
25 H 0.083 0.917
26 H 0.059 0.941
27 H 0.020 0.980
28 H 0.270 0.730
29 H 0.154 0.846
30 H 0.167 0.833
31 H 0.095 0.905
32 H 0.415 0.585
33 H 0.081 0.919
34 H 0.083 0.917
35 H 0.105 0.895
36 H 0.105 0.895
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -13.579 -19.611 8.104 25.193
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.069 4.069
2 N -0.326 5.326
3 C 0.100 3.900
4 C -0.580 4.580
5 H 0.043 0.957
6 C -0.187 4.187
7 N -0.585 5.585
8 Si 0.773 3.227
9 H -0.203 1.203
10 H -0.197 1.197
11 H -0.158 1.158
12 C 0.330 3.670
13 O -0.480 6.480
14 C -0.100 4.100
15 C -0.164 4.164
16 C -0.077 4.077
17 C -0.164 4.164
18 C 0.074 3.926
19 C -0.183 4.183
20 N -0.384 5.384
21 C -0.010 4.010
22 C -0.117 4.117
23 H 0.110 0.890
24 H 0.089 0.911
25 H 0.102 0.898
26 H 0.077 0.923
27 H 0.038 0.962
28 H 0.079 0.921
29 H 0.172 0.828
30 H 0.184 0.816
31 H 0.113 0.887
32 H 0.253 0.747
33 H 0.099 0.901
34 H 0.101 0.899
35 H 0.123 0.877
36 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -12.975 -19.614 7.998 24.841
hybrid contribution 1.563 0.933 -0.623 1.924
sum -11.412 -18.682 7.375 23.101
Atomic orbital electron populations
1.22336 0.77500 1.04001 1.03074 1.47830 1.08640 1.05585 1.70558
1.19430 0.92966 0.82132 0.95512 1.21556 1.37232 1.07000 0.92260
0.95690 1.25890 0.95054 0.98855 0.98858 1.70054 1.42541 1.24522
1.21403 0.85667 0.79576 0.77694 0.79733 1.20258 1.19669 1.15764
1.19049 0.86765 0.85070 0.76125 1.90676 1.16346 1.88190 1.52745
1.19443 0.97042 0.92228 1.01260 1.21516 0.93245 0.99936 1.01741
1.20642 1.00229 0.90176 0.96677 1.20569 0.95651 0.98522 1.01674
1.18292 0.94142 0.87402 0.92725 1.20214 1.00876 0.92703 1.04511
1.44929 1.26638 1.12106 1.54717 1.22033 0.87930 0.90745 1.00311
1.21183 0.99268 0.90143 1.01059 0.89031 0.91097 0.89830 0.92317
0.96173 0.92137 0.82822 0.81566 0.88706 0.74735 0.90062 0.89901
0.87714 0.87628
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.07 2.25 8.88 127.77 1.13 3.39 16
2 N -0.60 -26.45 2.86 -854.57 -2.44 -28.89 16
3 C 0.22 11.36 4.25 85.63 0.36 11.72 16
4 C -0.54 -33.29 9.94 25.60 0.25 -33.03 16
5 H 0.02 1.72 8.06 -2.91 -0.02 1.70 16
6 C 0.01 0.70 5.47 84.66 0.46 1.16 16
7 N -0.95 -61.19 13.96 21.45 0.30 -60.89 16
8 Si 0.95 45.40 27.47 68.60 1.88 47.29 16
9 H -0.28 -13.34 7.11 99.48 0.71 -12.63 16
10 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16
11 H -0.23 -9.97 6.54 99.48 0.65 -9.32 16
12 C 0.54 25.28 7.35 86.79 0.64 25.92 16
13 O -0.60 -33.70 16.46 -3.88 -0.06 -33.77 16
14 C -0.10 -3.52 5.22 -20.17 -0.11 -3.62 16
15 C -0.14 -3.76 7.56 22.53 0.17 -3.59 16
16 C -0.06 -1.17 10.02 22.22 0.22 -0.95 16
17 C -0.16 -3.35 6.23 -19.54 -0.12 -3.47 16
18 C 0.18 4.84 7.02 38.30 0.27 5.11 16
19 C -0.16 -5.68 9.65 22.79 0.22 -5.46 16
20 N -0.75 -15.39 6.53 -337.88 -2.21 -17.59 16
21 C 0.11 1.42 7.96 86.62 0.69 2.11 16
22 C -0.08 -0.97 6.94 30.28 0.21 -0.76 16
23 H 0.09 2.07 6.90 -2.39 -0.02 2.06 16
24 H 0.07 2.26 8.04 -2.39 -0.02 2.24 16
25 H 0.08 2.37 5.81 -2.39 -0.01 2.36 16
26 H 0.06 2.69 7.13 -2.39 -0.02 2.67 16
27 H 0.02 1.11 6.78 -2.39 -0.02 1.09 16
28 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16
29 H 0.15 3.32 5.32 -2.91 -0.02 3.30 16
30 H 0.17 1.88 8.06 -2.91 -0.02 1.86 16
31 H 0.09 3.80 8.05 -2.91 -0.02 3.78 16
32 H 0.41 7.72 8.96 -92.71 -0.83 6.89 16
33 H 0.08 0.78 8.14 -2.38 -0.02 0.76 16
34 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16
35 H 0.10 0.91 8.14 -2.39 -0.02 0.89 16
36 H 0.11 0.88 8.14 -2.38 -0.02 0.87 16
Total: -1.00 -84.42 298.49 2.10 -82.32
By element:
Atomic # 1 Polarization: 12.79 SS G_CDS: 0.22 Total: 13.01 kcal
Atomic # 6 Polarization: -5.88 SS G_CDS: 4.41 Total: -1.47 kcal
Atomic # 7 Polarization: -103.03 SS G_CDS: -4.35 Total: -107.38 kcal
Atomic # 8 Polarization: -33.70 SS G_CDS: -0.06 Total: -33.77 kcal
Atomic # 14 Polarization: 45.40 SS G_CDS: 1.88 Total: 47.29 kcal
Total: -84.42 2.10 -82.32 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000228552608.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 69.534 kcal
(2) G-P(sol) polarization free energy of solvation -84.419 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.886 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.097 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.323 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.789 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds