Wall clock time and date at job start Mon Mar 30 2020 05:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47464 * 2 1 4 4 C 1.50704 * 109.47196 * 239.99990 * 2 1 3 5 5 H 1.08002 * 120.00307 * 240.00335 * 4 2 1 6 6 C 1.37878 * 119.99825 * 60.00326 * 4 2 1 7 7 N 1.31512 * 120.00182 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00136 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47204 * 59.99634 * 8 6 4 10 10 H 1.48494 * 109.47261 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46695 * 299.99542 * 8 6 4 12 12 N 1.46897 * 109.47193 * 120.00581 * 2 1 3 13 13 C 1.46899 * 111.00323 * 176.04426 * 12 2 1 14 14 C 1.39895 * 110.99618 * 299.99711 * 12 2 1 15 15 C 1.38087 * 119.80288 * 300.02328 * 14 12 2 16 16 C 1.39205 * 119.90962 * 180.02562 * 15 14 12 17 17 N 1.37356 * 133.57120 * 179.97438 * 16 15 14 18 18 H 0.96999 * 125.95907 * 359.97438 * 17 16 15 19 19 N 1.40005 * 108.07745 * 179.97438 * 17 16 15 20 20 C 1.30154 * 109.77026 * 359.97438 * 19 17 16 21 21 C 1.40729 * 119.86448 * 359.97438 * 16 15 14 22 22 C 1.40238 * 119.72787 * 0.02562 * 21 16 15 23 23 C 1.37744 * 119.75906 * 359.97438 * 22 21 16 24 24 N 1.40186 * 119.82815 * 180.02562 * 23 22 21 25 25 H 1.08998 * 109.47215 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47013 * 300.00114 * 1 2 3 27 27 H 1.09001 * 109.46869 * 59.99951 * 1 2 3 28 28 H 0.96996 * 120.00602 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47351 * 183.95015 * 13 12 2 30 30 H 1.08994 * 109.47129 * 303.95054 * 13 12 2 31 31 H 1.08999 * 109.46920 * 63.95125 * 13 12 2 32 32 H 1.08008 * 120.04624 * 0.02562 * 15 14 12 33 33 H 1.08002 * 125.64456 * 180.02562 * 20 19 17 34 34 H 1.07998 * 120.12541 * 180.02562 * 22 21 16 35 35 H 0.96996 * 120.00068 * 359.97438 * 24 23 22 36 36 H 0.96999 * 119.99386 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5201 -4.0078 10 1 1.8260 -0.4204 -5.2204 11 1 3.8063 -1.1207 -4.0082 12 7 2.0196 -0.6926 1.1993 13 6 3.4850 -0.7947 1.1870 14 6 1.5711 -0.0583 2.3627 15 6 1.9103 1.2590 2.6006 16 6 1.4656 1.8922 3.7577 17 7 1.6285 3.1575 4.2668 18 1 2.1310 3.8772 3.8541 19 7 0.9426 3.2271 5.4854 20 6 0.3778 2.0822 5.7387 21 6 0.6712 1.1874 4.6811 22 6 0.3330 -0.1500 4.4291 23 6 0.7802 -0.7635 3.2798 24 7 0.4425 -2.1002 3.0262 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7088 1.1614 -3.4844 29 1 3.8163 -1.3723 2.0499 30 1 3.8069 -1.2916 0.2719 31 1 3.9192 0.2042 1.2300 32 1 2.5198 1.7973 1.8897 33 1 -0.2156 1.8526 6.6114 34 1 -0.2767 -0.6968 5.1332 35 1 -0.1045 -2.5908 3.6594 36 1 0.7565 -2.5347 2.2178 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231480972.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:17 Heat of formation + Delta-G solvation = 101.391802 kcal Electronic energy + Delta-G solvation = -19584.169142 eV Core-core repulsion = 16683.807990 eV Total energy + Delta-G solvation = -2900.361152 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.01362 -38.58311 -35.69244 -33.18043 -32.64131 -31.65528 -29.36240 -28.52185 -27.33076 -25.37752 -24.27921 -22.54776 -21.57171 -20.94838 -19.58428 -17.70000 -16.58909 -16.20672 -16.10686 -15.25600 -14.76575 -14.47744 -14.23811 -13.82438 -13.52630 -13.40690 -12.96672 -12.65707 -12.22890 -12.06461 -11.63362 -11.16926 -11.07175 -10.80300 -10.74084 -10.59222 -10.21935 -10.20142 -10.11275 -9.97140 -9.37330 -9.01790 -8.50073 -7.83991 -7.49281 -6.70183 -6.07279 -4.13151 1.23689 2.14846 2.86360 3.04909 3.27612 3.32918 3.34755 4.22818 4.33946 4.44221 4.78770 4.95892 5.12700 5.24741 5.33057 5.72591 5.86008 5.99337 6.09866 6.20908 6.25962 6.50633 6.62887 6.71204 6.78592 6.85759 6.97930 7.06505 7.17494 7.42619 7.58855 7.70827 7.75039 7.89039 8.01822 8.06372 8.25681 8.40855 8.59276 8.91790 9.52036 10.99182 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.030270 B = 0.005700 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.773560 B = 4910.874846 C = 5267.694755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.219 3.781 3 H 0.004 0.996 4 C -0.509 4.509 5 H 0.064 0.936 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.505 5.505 13 C 0.041 3.959 14 C 0.116 3.884 15 C -0.139 4.139 16 C 0.092 3.908 17 N -0.511 5.511 18 H 0.436 0.564 19 N -0.264 5.264 20 C 0.058 3.942 21 C -0.142 4.142 22 C -0.154 4.154 23 C 0.209 3.791 24 N -0.870 5.870 25 H 0.033 0.967 26 H 0.008 0.992 27 H 0.085 0.915 28 H 0.262 0.738 29 H 0.045 0.955 30 H 0.083 0.917 31 H 0.017 0.983 32 H 0.123 0.877 33 H 0.185 0.815 34 H 0.121 0.879 35 H 0.388 0.612 36 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.130 -1.593 12.187 12.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.115 3.885 3 H 0.022 0.978 4 C -0.548 4.548 5 H 0.082 0.918 6 C -0.141 4.141 7 N -0.530 5.530 8 Si 0.726 3.274 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.203 1.203 12 N -0.227 5.227 13 C -0.106 4.106 14 C 0.015 3.985 15 C -0.163 4.163 16 C -0.025 4.025 17 N -0.228 5.228 18 H 0.280 0.720 19 N -0.080 5.080 20 C -0.137 4.137 21 C -0.151 4.151 22 C -0.182 4.182 23 C 0.102 3.898 24 N -0.410 5.410 25 H 0.052 0.948 26 H 0.027 0.973 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.064 0.936 30 H 0.102 0.898 31 H 0.036 0.964 32 H 0.141 0.859 33 H 0.202 0.798 34 H 0.139 0.861 35 H 0.215 0.785 36 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges 0.080 -0.722 12.393 12.414 hybrid contribution 0.600 -0.273 -1.534 1.669 sum 0.680 -0.995 10.859 10.925 Atomic orbital electron populations 1.21757 0.97375 0.99560 1.00042 1.19364 0.92545 0.91979 0.84659 0.97848 1.21091 1.31490 1.12546 0.89649 0.91752 1.24923 0.95086 0.95037 0.99026 1.69884 1.36513 1.22894 1.23663 0.86569 0.79055 0.79751 0.82071 1.20192 1.21368 1.20322 1.59933 1.09995 1.51963 1.00855 1.22275 0.86967 0.99423 1.01903 1.18429 0.97117 0.90213 0.92709 1.20461 1.04566 0.95557 0.95740 1.18596 1.01068 0.86390 0.96443 1.45908 1.48155 1.10806 1.17919 0.72040 1.76478 1.10139 1.22553 0.98850 1.23716 1.00577 0.90067 0.99339 1.18518 1.04743 0.95399 0.96408 1.19629 1.06964 0.93378 0.98179 1.17320 0.94307 0.85741 0.92411 1.42365 1.60644 1.09958 1.28016 0.94820 0.97295 0.89688 0.92828 0.93577 0.89827 0.96432 0.85938 0.79820 0.86097 0.78508 0.76028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.13 8.85 37.16 0.33 -2.81 16 2 C 0.22 5.28 1.83 -68.87 -0.13 5.15 16 3 H 0.00 0.10 7.10 -51.93 -0.37 -0.26 16 4 C -0.51 -13.22 7.88 -34.44 -0.27 -13.49 16 5 H 0.06 1.64 6.41 -52.49 -0.34 1.30 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.53 16 7 N -0.89 -24.79 11.32 55.43 0.63 -24.16 16 8 Si 0.90 20.62 29.54 -169.99 -5.02 15.60 16 9 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 12 N -0.51 -10.23 3.74 -172.48 -0.65 -10.87 16 13 C 0.04 0.77 9.10 60.06 0.55 1.32 16 14 C 0.12 2.17 3.34 -83.52 -0.28 1.89 16 15 C -0.14 -2.55 8.56 -39.28 -0.34 -2.89 16 16 C 0.09 1.57 7.32 -84.09 -0.62 0.95 16 17 N -0.51 -7.82 7.45 32.38 0.24 -7.58 16 18 H 0.44 5.51 8.96 -182.67 -1.64 3.87 16 19 N -0.26 -4.04 12.57 30.88 0.39 -3.65 16 20 C 0.06 0.81 12.04 -16.98 -0.20 0.61 16 21 C -0.14 -2.27 6.17 -106.92 -0.66 -2.93 16 22 C -0.15 -2.30 9.93 -39.01 -0.39 -2.69 16 23 C 0.21 3.46 6.76 -83.50 -0.56 2.89 16 24 N -0.87 -12.31 9.09 32.53 0.30 -12.01 16 25 H 0.03 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.01 0.19 7.22 -51.93 -0.37 -0.18 16 27 H 0.08 2.27 6.07 -51.93 -0.32 1.96 16 28 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.08 1.63 6.10 -51.93 -0.32 1.31 16 31 H 0.02 0.32 7.32 -51.93 -0.38 -0.06 16 32 H 0.12 2.29 6.97 -52.48 -0.37 1.93 16 33 H 0.18 1.79 8.06 -52.49 -0.42 1.37 16 34 H 0.12 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.39 4.25 8.84 -40.82 -0.36 3.89 16 36 H 0.41 6.27 8.08 -40.82 -0.33 5.94 16 LS Contribution 295.89 15.07 4.46 4.46 Total: -1.00 -29.32 295.89 -7.93 -37.25 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -5.61 Total: 11.44 kcal Atomic # 6 Polarization: -7.80 SS G_CDS: -2.66 Total: -10.46 kcal Atomic # 7 Polarization: -59.19 SS G_CDS: 0.91 Total: -58.28 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -29.32 -7.93 -37.25 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231480972.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.637 kcal (2) G-P(sol) polarization free energy of solvation -29.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.322 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds