Wall clock time and date at job start Mon Mar 30 2020 05:08:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08996 * 109.47464 * 2 1 4 4 C 1.50704 * 109.47196 * 239.99990 * 2 1 3 5 5 H 1.08002 * 120.00307 * 240.00335 * 4 2 1 6 6 C 1.37878 * 119.99825 * 60.00326 * 4 2 1 7 7 N 1.31512 * 120.00182 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00136 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47204 * 59.99634 * 8 6 4 10 10 H 1.48494 * 109.47261 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46695 * 299.99542 * 8 6 4 12 12 N 1.46897 * 109.47193 * 120.00581 * 2 1 3 13 13 C 1.46899 * 111.00323 * 176.04426 * 12 2 1 14 14 C 1.39895 * 110.99618 * 299.99711 * 12 2 1 15 15 C 1.38087 * 119.80288 * 300.02328 * 14 12 2 16 16 C 1.39205 * 119.90962 * 180.02562 * 15 14 12 17 17 N 1.37356 * 133.57120 * 179.97438 * 16 15 14 18 18 H 0.96999 * 125.95907 * 359.97438 * 17 16 15 19 19 N 1.40005 * 108.07745 * 179.97438 * 17 16 15 20 20 C 1.30154 * 109.77026 * 359.97438 * 19 17 16 21 21 C 1.40729 * 119.86448 * 359.97438 * 16 15 14 22 22 C 1.40238 * 119.72787 * 0.02562 * 21 16 15 23 23 C 1.37744 * 119.75906 * 359.97438 * 22 21 16 24 24 N 1.40186 * 119.82815 * 180.02562 * 23 22 21 25 25 H 1.08998 * 109.47215 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47013 * 300.00114 * 1 2 3 27 27 H 1.09001 * 109.46869 * 59.99951 * 1 2 3 28 28 H 0.96996 * 120.00602 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47351 * 183.95015 * 13 12 2 30 30 H 1.08994 * 109.47129 * 303.95054 * 13 12 2 31 31 H 1.08999 * 109.46920 * 63.95125 * 13 12 2 32 32 H 1.08008 * 120.04624 * 0.02562 * 15 14 12 33 33 H 1.08002 * 125.64456 * 180.02562 * 20 19 17 34 34 H 1.07998 * 120.12541 * 180.02562 * 22 21 16 35 35 H 0.96996 * 120.00068 * 359.97438 * 24 23 22 36 36 H 0.96999 * 119.99386 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1202 -4.0080 9 1 1.8258 -2.5201 -4.0078 10 1 1.8260 -0.4204 -5.2204 11 1 3.8063 -1.1207 -4.0082 12 7 2.0196 -0.6926 1.1993 13 6 3.4850 -0.7947 1.1870 14 6 1.5711 -0.0583 2.3627 15 6 1.9103 1.2590 2.6006 16 6 1.4656 1.8922 3.7577 17 7 1.6285 3.1575 4.2668 18 1 2.1310 3.8772 3.8541 19 7 0.9426 3.2271 5.4854 20 6 0.3778 2.0822 5.7387 21 6 0.6712 1.1874 4.6811 22 6 0.3330 -0.1500 4.4291 23 6 0.7802 -0.7635 3.2798 24 7 0.4425 -2.1002 3.0262 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 0.7088 1.1614 -3.4844 29 1 3.8163 -1.3723 2.0499 30 1 3.8069 -1.2916 0.2719 31 1 3.9192 0.2042 1.2300 32 1 2.5198 1.7973 1.8897 33 1 -0.2156 1.8526 6.6114 34 1 -0.2767 -0.6968 5.1332 35 1 -0.1045 -2.5908 3.6594 36 1 0.7565 -2.5347 2.2178 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231480972.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:17 Heat of formation + Delta-G solvation = 81.168543 kcal Electronic energy + Delta-G solvation = -19585.046089 eV Core-core repulsion = 16683.807990 eV Total energy + Delta-G solvation = -2901.238099 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.24121 -40.01886 -37.16819 -34.83232 -34.11634 -32.85883 -31.22892 -29.92053 -28.56721 -27.24058 -25.91560 -24.04732 -22.85226 -22.20235 -21.20636 -19.05126 -18.09934 -17.84681 -17.37655 -16.96256 -16.24671 -15.85179 -15.53448 -15.42993 -14.92250 -14.71767 -14.31561 -14.27868 -13.77781 -13.68290 -13.08125 -12.93546 -12.76798 -12.61572 -12.33211 -12.07817 -12.01981 -11.89345 -11.77733 -11.34849 -10.96808 -10.54288 -10.52298 -9.19004 -9.16020 -8.10765 -7.89267 -6.22936 -0.04233 0.85908 1.45075 1.46345 1.53625 1.69325 1.90437 2.43023 2.94944 3.15917 3.23120 3.34535 3.78587 3.98186 4.11140 4.36469 4.54301 4.65481 4.72982 4.85450 4.88015 4.94650 5.04392 5.09563 5.21075 5.25697 5.36528 5.50163 5.63477 5.72376 5.79697 5.90318 6.21288 6.28303 6.43529 6.69255 6.74899 6.90306 6.99908 7.35583 7.46379 8.95303 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.030270 B = 0.005700 C = 0.005314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.773560 B = 4910.874846 C = 5267.694755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.227 3.773 3 H -0.034 1.034 4 C -0.519 4.519 5 H 0.068 0.932 6 C 0.012 3.988 7 N -0.922 5.922 8 Si 0.961 3.039 9 H -0.269 1.269 10 H -0.289 1.289 11 H -0.271 1.271 12 N -0.497 5.497 13 C 0.044 3.956 14 C 0.089 3.911 15 C -0.152 4.152 16 C 0.073 3.927 17 N -0.516 5.516 18 H 0.442 0.558 19 N -0.277 5.277 20 C 0.071 3.929 21 C -0.150 4.150 22 C -0.136 4.136 23 C 0.198 3.802 24 N -0.861 5.861 25 H 0.034 0.966 26 H 0.012 0.988 27 H 0.057 0.943 28 H 0.261 0.739 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.010 0.990 32 H 0.103 0.897 33 H 0.230 0.770 34 H 0.160 0.840 35 H 0.405 0.595 36 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.427 -2.922 13.991 14.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.122 3.878 3 H -0.016 1.016 4 C -0.557 4.557 5 H 0.086 0.914 6 C -0.187 4.187 7 N -0.562 5.562 8 Si 0.786 3.214 9 H -0.194 1.194 10 H -0.215 1.215 11 H -0.196 1.196 12 N -0.219 5.219 13 C -0.103 4.103 14 C -0.011 4.011 15 C -0.176 4.176 16 C -0.043 4.043 17 N -0.234 5.234 18 H 0.287 0.713 19 N -0.093 5.093 20 C -0.124 4.124 21 C -0.159 4.159 22 C -0.164 4.164 23 C 0.090 3.910 24 N -0.402 5.402 25 H 0.054 0.946 26 H 0.031 0.969 27 H 0.076 0.924 28 H 0.070 0.930 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.028 0.972 32 H 0.121 0.879 33 H 0.246 0.754 34 H 0.177 0.823 35 H 0.235 0.765 36 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -0.471 -2.062 14.227 14.383 hybrid contribution 0.757 0.183 -1.962 2.111 sum 0.286 -1.879 12.265 12.411 Atomic orbital electron populations 1.21511 0.97492 0.99093 0.98800 1.19072 0.92313 0.90210 0.86222 1.01603 1.21404 1.31238 1.12534 0.90513 0.91430 1.25713 0.95301 0.95684 1.01973 1.70031 1.37745 1.24311 1.24088 0.85567 0.78697 0.78733 0.78359 1.19430 1.21500 1.19617 1.59824 1.10643 1.51194 1.00228 1.22267 0.86337 0.99270 1.02413 1.18552 0.98967 0.90772 0.92848 1.20329 1.05213 0.95814 0.96273 1.18683 1.01753 0.87401 0.96496 1.45983 1.48611 1.10623 1.18151 0.71264 1.76481 1.10536 1.23507 0.98733 1.24429 0.99588 0.88640 0.99738 1.18904 1.04272 0.96017 0.96657 1.20006 1.05657 0.92987 0.97737 1.17400 0.94307 0.86655 0.92608 1.42288 1.60638 1.09128 1.28167 0.94647 0.96865 0.92427 0.93032 0.91082 0.90888 0.97162 0.87910 0.75384 0.82251 0.76507 0.76675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.49 8.85 71.98 0.64 -4.85 16 2 C 0.23 11.29 1.83 44.17 0.08 11.37 16 3 H -0.03 -1.89 7.10 -2.39 -0.02 -1.91 16 4 C -0.52 -27.33 7.88 25.60 0.20 -27.13 16 5 H 0.07 3.45 6.41 -2.91 -0.02 3.43 16 6 C 0.01 0.65 5.30 84.66 0.45 1.09 16 7 N -0.92 -52.66 11.32 21.45 0.24 -52.42 16 8 Si 0.96 42.52 29.54 68.60 2.03 44.55 16 9 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 10 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 11 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 12 N -0.50 -20.32 3.74 -699.60 -2.62 -22.94 16 13 C 0.04 1.66 9.10 127.69 1.16 2.82 16 14 C 0.09 3.32 3.34 38.28 0.13 3.45 16 15 C -0.15 -5.71 8.56 22.47 0.19 -5.52 16 16 C 0.07 2.48 7.32 39.12 0.29 2.76 16 17 N -0.52 -15.53 7.45 -51.45 -0.38 -15.91 16 18 H 0.44 11.35 8.96 -213.38 -1.91 9.44 16 19 N -0.28 -7.90 12.57 -56.21 -0.71 -8.60 16 20 C 0.07 1.74 12.04 85.77 1.03 2.77 16 21 C -0.15 -4.39 6.17 -21.35 -0.13 -4.53 16 22 C -0.14 -3.63 9.93 22.64 0.22 -3.41 16 23 C 0.20 6.17 6.76 38.15 0.26 6.42 16 24 N -0.86 -22.40 9.09 -50.99 -0.46 -22.86 16 25 H 0.03 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.01 0.60 7.22 -2.39 -0.02 0.58 16 27 H 0.06 3.17 6.07 -2.39 -0.01 3.15 16 28 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.07 2.87 6.10 -2.39 -0.01 2.85 16 31 H 0.01 0.38 7.32 -2.39 -0.02 0.36 16 32 H 0.10 4.14 6.97 -2.91 -0.02 4.12 16 33 H 0.23 3.23 8.06 -2.91 -0.02 3.21 16 34 H 0.16 2.98 8.06 -2.91 -0.02 2.96 16 35 H 0.41 7.58 8.84 -92.71 -0.82 6.76 16 36 H 0.40 11.71 8.08 -92.71 -0.75 10.96 16 Total: -1.00 -63.66 295.89 0.28 -63.38 By element: Atomic # 1 Polarization: 31.89 SS G_CDS: -2.34 Total: 29.55 kcal Atomic # 6 Polarization: -19.26 SS G_CDS: 4.52 Total: -14.74 kcal Atomic # 7 Polarization: -118.81 SS G_CDS: -3.93 Total: -122.74 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.55 kcal Total: -63.66 0.28 -63.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231480972.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.549 kcal (2) G-P(sol) polarization free energy of solvation -63.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.885 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds