Wall clock time and date at job start Mon Mar 30 2020 04:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38629 * 120.36491 * 2 1 4 4 C 1.39689 * 118.42375 * 179.97438 * 3 2 1 5 5 C 1.43201 * 120.52042 * 180.02562 * 4 3 2 6 6 N 4.80314 * 136.34704 * 0.02562 * 2 1 3 7 7 N 1.33194 * 118.96343 * 0.02562 * 4 3 2 8 8 C 1.32276 * 120.62050 * 359.97438 * 7 4 3 9 9 N 1.38431 * 119.13033 * 179.97438 * 8 7 4 10 10 C 1.46505 * 119.99401 * 180.02562 * 9 8 7 11 11 C 1.50705 * 109.46860 * 90.00864 * 10 9 8 12 12 H 1.07991 * 119.99999 * 359.97438 * 11 10 9 13 13 C 1.37874 * 119.99511 * 180.02562 * 11 10 9 14 14 N 1.31516 * 120.00460 * 359.97438 * 13 11 10 15 15 Si 1.86800 * 119.99743 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47269 * 59.99554 * 15 13 11 17 17 H 1.48502 * 109.47470 * 179.97438 * 15 13 11 18 18 H 1.48497 * 109.47110 * 299.99843 * 15 13 11 19 19 C 1.46497 * 120.00397 * 0.02562 * 9 8 7 20 20 C 1.52998 * 109.46691 * 299.99614 * 19 9 8 21 21 C 1.52998 * 109.47302 * 59.99470 * 19 9 8 22 22 N 1.32205 * 120.36887 * 179.97438 * 2 1 3 23 23 H 1.09004 * 109.47109 * 90.00046 * 1 2 3 24 24 H 1.08999 * 109.46474 * 209.99591 * 1 2 3 25 25 H 1.09001 * 109.47372 * 329.99600 * 1 2 3 26 26 H 1.08004 * 120.78553 * 359.96049 * 3 2 1 27 27 H 1.09007 * 109.46864 * 210.00092 * 10 9 8 28 28 H 1.08993 * 109.47803 * 330.00196 * 10 9 8 29 29 H 0.96999 * 120.00117 * 180.02562 * 14 13 11 30 30 H 1.08992 * 109.47389 * 179.97438 * 19 9 8 31 31 H 1.09003 * 109.47369 * 60.00331 * 20 19 9 32 32 H 1.09006 * 109.47177 * 179.97438 * 20 19 9 33 33 H 1.08999 * 109.47759 * 299.99844 * 20 19 9 34 34 H 1.08998 * 109.47079 * 59.99902 * 21 19 9 35 35 H 1.08997 * 109.46945 * 180.02562 * 21 19 9 36 36 H 1.09002 * 109.47040 * 300.00480 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2078 1.1961 0.0000 4 6 3.6039 1.1488 0.0005 5 6 4.3725 2.3571 0.0011 6 7 4.9822 3.3156 0.0015 7 7 4.2090 -0.0377 0.0005 8 6 3.5011 -1.1551 0.0005 9 7 4.1619 -2.3715 -0.0001 10 6 3.3965 -3.6208 -0.0007 11 6 3.1343 -4.0485 -1.4217 12 1 3.5007 -3.4495 -2.2422 13 6 2.4258 -5.2040 -1.6742 14 7 1.9792 -5.9332 -0.6749 15 14 2.1001 -5.7339 -3.4356 16 1 3.3925 -5.9451 -4.1360 17 1 1.3245 -7.0002 -3.4363 18 1 1.3251 -4.6777 -4.1350 19 6 5.6263 -2.4096 0.0000 20 6 6.1549 -1.7014 -1.2490 21 6 6.1550 -1.7024 1.2494 22 7 2.1754 -1.1406 0.0005 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3632 -0.8900 0.5138 25 1 -0.3634 0.8899 0.5139 26 1 1.6866 2.1421 -0.0006 27 1 3.9657 -4.3958 0.5129 28 1 2.4478 -3.4660 0.5131 29 1 1.4810 -6.7463 -0.8526 30 1 5.9628 -3.4463 -0.0001 31 1 5.8184 -0.6646 -1.2486 32 1 7.2446 -1.7293 -1.2488 33 1 5.7783 -2.2052 -2.1392 34 1 5.7784 -2.2069 2.1392 35 1 7.2446 -1.7304 1.2492 36 1 5.8184 -0.6656 1.2499 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231895007.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:59:57 Heat of formation + Delta-G solvation = 79.471903 kcal Electronic energy + Delta-G solvation = -19396.758813 eV Core-core repulsion = 16495.447143 eV Total energy + Delta-G solvation = -2901.311671 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.07964 -38.73836 -37.79079 -35.43473 -34.79152 -33.81211 -31.97872 -29.57834 -28.53232 -27.96407 -26.02346 -24.74030 -23.85535 -21.39411 -19.79975 -18.54551 -18.41058 -17.12051 -16.56605 -16.46466 -16.36073 -15.78252 -15.00525 -14.83343 -14.54967 -14.48629 -14.24723 -14.00525 -13.78341 -13.75704 -13.54984 -13.10691 -12.99122 -12.83241 -12.75745 -12.52937 -12.29267 -12.18981 -11.94968 -11.69026 -11.34335 -11.28409 -10.78926 -10.56358 -10.00652 -8.72839 -8.09859 -6.26879 -0.36609 0.28549 1.24969 1.41312 1.42168 1.50228 1.88333 1.97840 2.39162 2.45274 3.01968 3.15451 3.38873 3.68629 4.00488 4.13053 4.30732 4.32767 4.42285 4.48300 4.80636 4.84767 4.87588 4.92412 5.02375 5.06261 5.08486 5.13344 5.29158 5.45616 5.46433 5.52046 5.72278 5.92580 6.11261 6.16954 6.24794 6.66398 6.83794 7.36971 7.48799 8.91552 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.019082 B = 0.006954 C = 0.005825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.023912 B = 4025.415007 C = 4806.090383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.215 3.785 3 C -0.237 4.237 4 C 0.262 3.738 5 C 0.296 3.704 6 N -0.407 5.407 7 N -0.556 5.556 8 C 0.572 3.428 9 N -0.567 5.567 10 C 0.277 3.723 11 C -0.529 4.529 12 H 0.044 0.956 13 C 0.018 3.982 14 N -0.924 5.924 15 Si 0.956 3.044 16 H -0.272 1.272 17 H -0.279 1.279 18 H -0.276 1.276 19 C 0.152 3.848 20 C -0.154 4.154 21 C -0.154 4.154 22 N -0.571 5.571 23 H 0.095 0.905 24 H 0.069 0.931 25 H 0.119 0.881 26 H 0.188 0.812 27 H 0.016 0.984 28 H 0.025 0.975 29 H 0.266 0.734 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.081 0.919 33 H 0.032 0.968 34 H 0.042 0.958 35 H 0.083 0.917 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.094 11.933 1.923 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.064 3.936 3 C -0.267 4.267 4 C 0.114 3.886 5 C -0.021 4.021 6 N -0.084 5.084 7 N -0.283 5.283 8 C 0.216 3.784 9 N -0.280 5.280 10 C 0.156 3.844 11 C -0.568 4.568 12 H 0.063 0.937 13 C -0.181 4.181 14 N -0.564 5.564 15 Si 0.781 3.219 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.201 1.201 19 C 0.049 3.951 20 C -0.212 4.212 21 C -0.212 4.212 22 N -0.295 5.295 23 H 0.114 0.886 24 H 0.088 0.912 25 H 0.137 0.863 26 H 0.205 0.795 27 H 0.034 0.966 28 H 0.043 0.957 29 H 0.075 0.925 30 H 0.099 0.901 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.052 0.948 34 H 0.061 0.939 35 H 0.102 0.898 36 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 1.563 12.077 1.979 12.337 hybrid contribution -0.745 -0.515 -0.883 1.265 sum 0.818 11.562 1.096 11.643 Atomic orbital electron populations 1.20910 0.85152 1.05088 1.04683 1.22157 0.98938 0.86354 0.86181 1.22452 0.92302 1.01826 1.10113 1.16434 0.89946 0.86285 0.95918 1.24722 0.92167 0.91692 0.93561 1.81236 1.07683 1.11934 1.07596 1.67895 1.39816 0.96994 1.23611 1.19155 0.84947 0.85882 0.88376 1.47021 1.05951 1.02075 1.72938 1.18857 0.90814 0.78757 0.95964 1.21545 1.34828 1.07609 0.92823 0.93736 1.25624 0.95228 0.96339 1.00923 1.70016 1.37937 1.15859 1.32556 0.85649 0.78346 0.77532 0.80323 1.19719 1.20450 1.20112 1.21055 0.77441 1.00179 0.96469 1.22119 1.01368 1.01571 0.96157 1.22148 1.01626 1.01749 0.95701 1.67961 1.08195 1.32356 1.20995 0.88626 0.91187 0.86273 0.79466 0.96588 0.95692 0.92516 0.90150 0.91236 0.89972 0.94840 0.93871 0.89812 0.91147 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.05 10.21 71.24 0.73 -1.32 16 2 C 0.21 6.17 6.82 42.60 0.29 6.46 16 3 C -0.24 -5.57 9.57 22.71 0.22 -5.35 16 4 C 0.26 7.41 6.61 40.53 0.27 7.68 16 5 C 0.30 7.87 15.60 88.33 1.38 9.25 16 6 N -0.41 -11.53 18.54 19.00 0.35 -11.18 16 7 N -0.56 -19.15 5.38 -191.57 -1.03 -20.18 16 8 C 0.57 22.94 7.62 261.53 1.99 24.93 16 9 N -0.57 -24.36 2.49 -691.23 -1.72 -26.08 16 10 C 0.28 14.17 5.13 85.63 0.44 14.61 16 11 C -0.53 -29.04 9.39 25.60 0.24 -28.80 16 12 H 0.04 2.49 7.81 -2.91 -0.02 2.47 16 13 C 0.02 1.00 5.46 84.65 0.46 1.46 16 14 N -0.92 -53.14 13.29 21.45 0.28 -52.85 16 15 Si 0.96 43.48 29.54 68.60 2.03 45.50 16 16 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 17 H -0.28 -12.30 7.11 99.48 0.71 -11.60 16 18 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 19 C 0.15 5.46 3.28 44.99 0.15 5.61 16 20 C -0.15 -5.11 9.13 71.98 0.66 -4.45 16 21 C -0.15 -4.65 9.13 71.98 0.66 -4.00 16 22 N -0.57 -22.69 9.03 -186.14 -1.68 -24.37 16 23 H 0.10 1.77 8.14 -2.38 -0.02 1.75 16 24 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 25 H 0.12 1.40 8.09 -2.39 -0.02 1.38 16 26 H 0.19 2.65 8.06 -2.91 -0.02 2.62 16 27 H 0.02 0.86 7.92 -2.38 -0.02 0.84 16 28 H 0.03 1.40 7.33 -2.39 -0.02 1.38 16 29 H 0.27 14.47 8.31 -92.71 -0.77 13.70 16 30 H 0.08 2.95 7.79 -2.39 -0.02 2.94 16 31 H 0.07 2.38 5.93 -2.39 -0.01 2.37 16 32 H 0.08 2.20 8.14 -2.38 -0.02 2.18 16 33 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.07 2.24 5.93 -2.39 -0.01 2.22 16 Total: -1.00 -64.41 313.54 6.80 -57.61 By element: Atomic # 1 Polarization: 4.38 SS G_CDS: 1.08 Total: 5.46 kcal Atomic # 6 Polarization: 18.60 SS G_CDS: 7.48 Total: 26.08 kcal Atomic # 7 Polarization: -130.87 SS G_CDS: -3.79 Total: -134.66 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.50 kcal Total: -64.41 6.80 -57.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231895007.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.085 kcal (2) G-P(sol) polarization free energy of solvation -64.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.613 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds