Wall clock time and date at job start Mon Mar 30 2020 05:08:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47327 * 2 1 4 4 C 1.50702 * 109.46946 * 240.00427 * 2 1 3 5 5 H 1.08001 * 120.00541 * 356.31768 * 4 2 1 6 6 C 1.37882 * 119.99703 * 176.32195 * 4 2 1 7 7 N 1.31515 * 120.00005 * 173.94238 * 6 4 2 8 8 Si 1.86803 * 120.00059 * 353.94182 * 6 4 2 9 9 H 1.48496 * 109.46819 * 85.12843 * 8 6 4 10 10 H 1.48495 * 109.46793 * 205.12721 * 8 6 4 11 11 H 1.48505 * 109.47061 * 325.12548 * 8 6 4 12 12 N 1.46892 * 109.47072 * 120.00111 * 2 1 3 13 13 C 1.46904 * 111.00172 * 58.95602 * 12 2 1 14 14 C 1.38861 * 111.00261 * 294.99972 * 12 2 1 15 15 N 1.32246 * 120.01216 * 0.02562 * 14 12 2 16 16 C 1.32369 * 122.25891 * 180.02562 * 15 14 12 17 17 C 1.36656 * 121.50348 * 359.97042 * 16 15 14 18 18 C 1.39306 * 119.07749 * 0.02856 * 17 16 15 19 19 C 1.40307 * 120.01520 * 179.72784 * 14 12 2 20 20 N 1.35559 * 134.52620 * 0.71075 * 19 14 12 21 21 C 1.30140 * 109.58450 * 179.53878 * 20 19 14 22 22 N 1.36265 * 110.01897 * 359.73501 * 21 20 19 23 23 C 1.46504 * 126.33782 * 179.97438 * 22 21 20 24 24 H 1.08993 * 109.47384 * 293.92952 * 1 2 3 25 25 H 1.09007 * 109.46995 * 53.92338 * 1 2 3 26 26 H 1.08996 * 109.47145 * 173.92321 * 1 2 3 27 27 H 0.96994 * 120.00229 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.46869 * 59.99467 * 13 12 2 29 29 H 1.09001 * 109.47321 * 179.97438 * 13 12 2 30 30 H 1.08995 * 109.46796 * 300.00178 * 13 12 2 31 31 H 1.07993 * 119.24838 * 179.97438 * 16 15 14 32 32 H 1.08000 * 120.45971 * 180.02562 * 17 16 15 33 33 H 1.07999 * 124.98594 * 179.77001 * 21 20 19 34 34 H 1.08998 * 109.47380 * 270.02993 * 23 22 21 35 35 H 1.09000 * 109.47139 * 30.02598 * 23 22 21 36 36 H 1.09001 * 109.46768 * 150.02592 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 1.3324 -1.1725 -1.9109 6 6 3.3856 -0.7703 -1.4877 7 7 3.8324 -1.4895 -2.4941 8 14 4.5844 0.1699 -0.4068 9 1 4.9219 -0.6482 0.7857 10 1 5.8217 0.4590 -1.1752 11 1 3.9623 1.4462 0.0284 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6690 -0.0009 2.3513 15 7 0.9817 1.1254 2.2633 16 6 0.6245 1.8205 3.3317 17 6 0.9490 1.4078 4.5934 18 6 1.6728 0.2285 4.7548 19 6 2.0384 -0.5002 3.6095 20 7 2.7277 -1.5867 4.0361 21 6 2.7975 -1.5764 5.3356 22 7 2.1609 -0.4770 5.8283 23 6 2.0231 -0.1139 7.2409 24 1 -0.3634 0.4168 0.9393 25 1 -0.3633 0.6052 -0.8307 26 1 -0.3633 -1.0218 -0.1088 27 1 4.7844 -1.5315 -2.6753 28 1 1.8762 -2.6150 0.3645 29 1 1.9060 -2.5659 2.1434 30 1 0.4385 -2.0743 1.2638 31 1 0.0639 2.7345 3.2034 32 1 0.6486 1.9879 5.4534 33 1 3.2883 -2.3286 5.9353 34 1 1.1110 -0.5555 7.6423 35 1 2.8828 -0.4870 7.7975 36 1 1.9731 0.9710 7.3339 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000235424127.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:14 Heat of formation + Delta-G solvation = 117.861670 kcal Electronic energy + Delta-G solvation = -19970.783326 eV Core-core repulsion = 17071.136361 eV Total energy + Delta-G solvation = -2899.646965 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.12001 -38.99750 -36.50663 -34.14309 -32.37682 -30.76505 -30.22530 -28.47450 -27.10426 -25.48612 -25.13603 -22.91544 -22.49072 -20.55948 -19.25588 -17.49781 -17.10897 -16.52364 -15.88919 -15.81565 -14.80114 -14.74002 -14.09742 -13.86983 -13.58356 -13.45221 -13.01718 -13.00310 -12.60270 -12.28273 -12.17922 -11.55854 -11.23407 -11.05857 -10.65719 -10.55595 -10.28758 -9.95588 -9.82126 -9.55473 -9.13650 -8.92802 -8.61047 -8.60445 -8.39446 -7.02044 -6.00877 -4.05853 1.20166 1.79136 2.60272 2.97285 3.54250 3.60163 3.71565 4.18086 4.33828 4.48231 4.53299 4.64184 4.70940 4.88155 5.10085 5.10848 5.30177 5.37996 5.54713 5.66492 5.91540 6.22141 6.29036 6.43065 6.43944 6.49042 6.69613 6.72475 6.87778 6.96989 7.14232 7.18304 7.36305 7.68207 7.78510 7.96196 8.27098 8.55309 8.72696 9.02267 9.65036 11.08988 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.026193 B = 0.007444 C = 0.006805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.731806 B = 3760.419940 C = 4113.706449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.176 3.824 3 H 0.057 0.943 4 C -0.516 4.516 5 H 0.076 0.924 6 C 0.089 3.911 7 N -0.894 5.894 8 Si 0.894 3.106 9 H -0.267 1.267 10 H -0.304 1.304 11 H -0.272 1.272 12 N -0.461 5.461 13 C 0.043 3.957 14 C 0.405 3.595 15 N -0.530 5.530 16 C 0.137 3.863 17 C -0.227 4.227 18 C 0.099 3.901 19 C -0.032 4.032 20 N -0.453 5.453 21 C 0.226 3.774 22 N -0.496 5.496 23 C 0.084 3.916 24 H 0.057 0.943 25 H 0.049 0.951 26 H 0.038 0.962 27 H 0.264 0.736 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.027 0.973 31 H 0.155 0.845 32 H 0.121 0.879 33 H 0.211 0.789 34 H 0.072 0.928 35 H 0.086 0.914 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.805 2.905 20.515 21.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.073 3.927 3 H 0.075 0.925 4 C -0.554 4.554 5 H 0.094 0.906 6 C -0.115 4.115 7 N -0.531 5.531 8 Si 0.723 3.277 9 H -0.192 1.192 10 H -0.231 1.231 11 H -0.197 1.197 12 N -0.175 5.175 13 C -0.103 4.103 14 C 0.163 3.837 15 N -0.249 5.249 16 C -0.015 4.015 17 C -0.253 4.253 18 C -0.018 4.018 19 C -0.155 4.155 20 N -0.171 5.171 21 C -0.060 4.060 22 N -0.188 5.188 23 C -0.059 4.059 24 H 0.076 0.924 25 H 0.068 0.932 26 H 0.057 0.943 27 H 0.073 0.927 28 H 0.112 0.888 29 H 0.089 0.911 30 H 0.045 0.955 31 H 0.172 0.828 32 H 0.139 0.861 33 H 0.228 0.772 34 H 0.090 0.910 35 H 0.105 0.895 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.042 2.513 19.058 19.643 hybrid contribution 0.130 0.819 2.133 2.289 sum -3.912 3.332 21.191 21.805 Atomic orbital electron populations 1.22264 0.98367 0.99963 1.01035 1.19859 0.91317 0.95549 0.85988 0.92475 1.20982 0.92858 1.36419 1.05137 0.90621 1.24967 0.98465 0.93887 0.94207 1.69946 1.14587 1.38957 1.29578 0.86512 0.79203 0.81327 0.80689 1.19212 1.23131 1.19673 1.59638 1.52385 1.04349 1.01154 1.22285 0.96968 0.86896 1.04109 1.19888 0.85706 0.89655 0.88494 1.68059 1.15350 1.09182 1.32316 1.21979 0.95270 0.97384 0.86868 1.20287 1.08552 0.97297 0.99211 1.18803 0.99701 0.95721 0.87551 1.19450 1.06727 0.95968 0.93352 1.70310 1.17560 1.20711 1.08499 1.25371 0.98822 0.90895 0.90903 1.45171 1.46275 1.21062 1.06243 1.21904 1.03212 1.02521 0.78242 0.92436 0.93212 0.94293 0.92659 0.88789 0.91093 0.95466 0.82826 0.86067 0.77212 0.90963 0.89534 0.90019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.48 8.22 37.16 0.31 -3.18 16 2 C 0.18 4.44 1.33 -68.87 -0.09 4.35 16 3 H 0.06 1.54 6.43 -51.93 -0.33 1.21 16 4 C -0.52 -14.77 7.80 -34.44 -0.27 -15.04 16 5 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16 6 C 0.09 2.66 5.46 -17.82 -0.10 2.56 16 7 N -0.89 -27.73 13.96 55.43 0.77 -26.95 16 8 Si 0.89 24.31 26.37 -169.99 -4.48 19.82 16 9 H -0.27 -7.42 7.11 56.52 0.40 -7.02 16 10 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 11 H -0.27 -7.39 6.54 56.52 0.37 -7.02 16 12 N -0.46 -11.16 3.05 -174.47 -0.53 -11.69 16 13 C 0.04 0.95 8.67 60.07 0.52 1.47 16 14 C 0.41 8.91 6.02 -154.84 -0.93 7.97 16 15 N -0.53 -10.77 6.52 -12.46 -0.08 -10.86 16 16 C 0.14 2.17 11.10 -17.89 -0.20 1.97 16 17 C -0.23 -3.26 10.08 -39.76 -0.40 -3.66 16 18 C 0.10 1.60 6.92 -84.08 -0.58 1.02 16 19 C -0.03 -0.63 6.52 -84.56 -0.55 -1.18 16 20 N -0.45 -8.45 9.77 -11.88 -0.12 -8.56 16 21 C 0.23 3.00 12.51 -89.55 -1.12 1.87 16 22 N -0.50 -6.15 3.20 -123.12 -0.39 -6.55 16 23 C 0.08 0.56 11.19 59.85 0.67 1.23 16 24 H 0.06 1.20 5.59 -51.93 -0.29 0.91 16 25 H 0.05 1.06 8.14 -51.92 -0.42 0.63 16 26 H 0.04 0.84 6.73 -51.93 -0.35 0.49 16 27 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 28 H 0.09 2.25 7.12 -51.93 -0.37 1.88 16 29 H 0.07 1.50 6.14 -51.93 -0.32 1.18 16 30 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16 31 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.21 1.71 8.06 -52.49 -0.42 1.28 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 290.91 15.07 4.38 4.38 Total: -1.00 -35.62 290.91 -7.74 -43.36 By element: Atomic # 1 Polarization: 2.20 SS G_CDS: -4.54 Total: -2.34 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -2.75 Total: -0.62 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -0.35 Total: -64.61 kcal Atomic # 14 Polarization: 24.31 SS G_CDS: -4.48 Total: 19.82 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -35.62 -7.74 -43.36 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235424127.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.222 kcal (2) G-P(sol) polarization free energy of solvation -35.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 117.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds