Wall clock time and date at job start Mon Mar 30 2020 05:08:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09002 * 109.47327 * 2 1
4 4 C 1.50702 * 109.46946 * 240.00427 * 2 1 3
5 5 H 1.08001 * 120.00541 * 356.31768 * 4 2 1
6 6 C 1.37882 * 119.99703 * 176.32195 * 4 2 1
7 7 N 1.31515 * 120.00005 * 173.94238 * 6 4 2
8 8 Si 1.86803 * 120.00059 * 353.94182 * 6 4 2
9 9 H 1.48496 * 109.46819 * 85.12843 * 8 6 4
10 10 H 1.48495 * 109.46793 * 205.12721 * 8 6 4
11 11 H 1.48505 * 109.47061 * 325.12548 * 8 6 4
12 12 N 1.46892 * 109.47072 * 120.00111 * 2 1 3
13 13 C 1.46904 * 111.00172 * 58.95602 * 12 2 1
14 14 C 1.38861 * 111.00261 * 294.99972 * 12 2 1
15 15 N 1.32246 * 120.01216 * 0.02562 * 14 12 2
16 16 C 1.32369 * 122.25891 * 180.02562 * 15 14 12
17 17 C 1.36656 * 121.50348 * 359.97042 * 16 15 14
18 18 C 1.39306 * 119.07749 * 0.02856 * 17 16 15
19 19 C 1.40307 * 120.01520 * 179.72784 * 14 12 2
20 20 N 1.35559 * 134.52620 * 0.71075 * 19 14 12
21 21 C 1.30140 * 109.58450 * 179.53878 * 20 19 14
22 22 N 1.36265 * 110.01897 * 359.73501 * 21 20 19
23 23 C 1.46504 * 126.33782 * 179.97438 * 22 21 20
24 24 H 1.08993 * 109.47384 * 293.92952 * 1 2 3
25 25 H 1.09007 * 109.46995 * 53.92338 * 1 2 3
26 26 H 1.08996 * 109.47145 * 173.92321 * 1 2 3
27 27 H 0.96994 * 120.00229 * 179.97438 * 7 6 4
28 28 H 1.09003 * 109.46869 * 59.99467 * 13 12 2
29 29 H 1.09001 * 109.47321 * 179.97438 * 13 12 2
30 30 H 1.08995 * 109.46796 * 300.00178 * 13 12 2
31 31 H 1.07993 * 119.24838 * 179.97438 * 16 15 14
32 32 H 1.08000 * 120.45971 * 180.02562 * 17 16 15
33 33 H 1.07999 * 124.98594 * 179.77001 * 21 20 19
34 34 H 1.08998 * 109.47380 * 270.02993 * 23 22 21
35 35 H 1.09000 * 109.47139 * 30.02598 * 23 22 21
36 36 H 1.09001 * 109.46768 * 150.02592 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 1.3324 -1.1725 -1.9109
6 6 3.3856 -0.7703 -1.4877
7 7 3.8324 -1.4895 -2.4941
8 14 4.5844 0.1699 -0.4068
9 1 4.9219 -0.6482 0.7857
10 1 5.8217 0.4590 -1.1752
11 1 3.9623 1.4462 0.0284
12 7 2.0196 -0.6925 1.1994
13 6 1.5283 -2.0761 1.2459
14 6 1.6690 -0.0009 2.3513
15 7 0.9817 1.1254 2.2633
16 6 0.6245 1.8205 3.3317
17 6 0.9490 1.4078 4.5934
18 6 1.6728 0.2285 4.7548
19 6 2.0384 -0.5002 3.6095
20 7 2.7277 -1.5867 4.0361
21 6 2.7975 -1.5764 5.3356
22 7 2.1609 -0.4770 5.8283
23 6 2.0231 -0.1139 7.2409
24 1 -0.3634 0.4168 0.9393
25 1 -0.3633 0.6052 -0.8307
26 1 -0.3633 -1.0218 -0.1088
27 1 4.7844 -1.5315 -2.6753
28 1 1.8762 -2.6150 0.3645
29 1 1.9060 -2.5659 2.1434
30 1 0.4385 -2.0743 1.2638
31 1 0.0639 2.7345 3.2034
32 1 0.6486 1.9879 5.4534
33 1 3.2883 -2.3286 5.9353
34 1 1.1110 -0.5555 7.6423
35 1 2.8828 -0.4870 7.7975
36 1 1.9731 0.9710 7.3339
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000235424127.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:08:14
Heat of formation + Delta-G solvation = 117.861670 kcal
Electronic energy + Delta-G solvation = -19970.783326 eV
Core-core repulsion = 17071.136361 eV
Total energy + Delta-G solvation = -2899.646965 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.133 amu
Computer time = 0.35 seconds
Orbital eigenvalues (eV)
-42.12001 -38.99750 -36.50663 -34.14309 -32.37682 -30.76505 -30.22530 -28.47450
-27.10426 -25.48612 -25.13603 -22.91544 -22.49072 -20.55948 -19.25588 -17.49781
-17.10897 -16.52364 -15.88919 -15.81565 -14.80114 -14.74002 -14.09742 -13.86983
-13.58356 -13.45221 -13.01718 -13.00310 -12.60270 -12.28273 -12.17922 -11.55854
-11.23407 -11.05857 -10.65719 -10.55595 -10.28758 -9.95588 -9.82126 -9.55473
-9.13650 -8.92802 -8.61047 -8.60445 -8.39446 -7.02044 -6.00877 -4.05853
1.20166 1.79136 2.60272 2.97285 3.54250 3.60163 3.71565 4.18086
4.33828 4.48231 4.53299 4.64184 4.70940 4.88155 5.10085 5.10848
5.30177 5.37996 5.54713 5.66492 5.91540 6.22141 6.29036 6.43065
6.43944 6.49042 6.69613 6.72475 6.87778 6.96989 7.14232 7.18304
7.36305 7.68207 7.78510 7.96196 8.27098 8.55309 8.72696 9.02267
9.65036 11.08988
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.026193 B = 0.007444 C = 0.006805
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1068.731806 B = 3760.419940 C = 4113.706449
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.158 4.158
2 C 0.176 3.824
3 H 0.057 0.943
4 C -0.516 4.516
5 H 0.076 0.924
6 C 0.089 3.911
7 N -0.894 5.894
8 Si 0.894 3.106
9 H -0.267 1.267
10 H -0.304 1.304
11 H -0.272 1.272
12 N -0.461 5.461
13 C 0.043 3.957
14 C 0.405 3.595
15 N -0.530 5.530
16 C 0.137 3.863
17 C -0.227 4.227
18 C 0.099 3.901
19 C -0.032 4.032
20 N -0.453 5.453
21 C 0.226 3.774
22 N -0.496 5.496
23 C 0.084 3.916
24 H 0.057 0.943
25 H 0.049 0.951
26 H 0.038 0.962
27 H 0.264 0.736
28 H 0.093 0.907
29 H 0.070 0.930
30 H 0.027 0.973
31 H 0.155 0.845
32 H 0.121 0.879
33 H 0.211 0.789
34 H 0.072 0.928
35 H 0.086 0.914
36 H 0.081 0.919
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.805 2.905 20.515 21.270
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.216 4.216
2 C 0.073 3.927
3 H 0.075 0.925
4 C -0.554 4.554
5 H 0.094 0.906
6 C -0.115 4.115
7 N -0.531 5.531
8 Si 0.723 3.277
9 H -0.192 1.192
10 H -0.231 1.231
11 H -0.197 1.197
12 N -0.175 5.175
13 C -0.103 4.103
14 C 0.163 3.837
15 N -0.249 5.249
16 C -0.015 4.015
17 C -0.253 4.253
18 C -0.018 4.018
19 C -0.155 4.155
20 N -0.171 5.171
21 C -0.060 4.060
22 N -0.188 5.188
23 C -0.059 4.059
24 H 0.076 0.924
25 H 0.068 0.932
26 H 0.057 0.943
27 H 0.073 0.927
28 H 0.112 0.888
29 H 0.089 0.911
30 H 0.045 0.955
31 H 0.172 0.828
32 H 0.139 0.861
33 H 0.228 0.772
34 H 0.090 0.910
35 H 0.105 0.895
36 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -4.042 2.513 19.058 19.643
hybrid contribution 0.130 0.819 2.133 2.289
sum -3.912 3.332 21.191 21.805
Atomic orbital electron populations
1.22264 0.98367 0.99963 1.01035 1.19859 0.91317 0.95549 0.85988
0.92475 1.20982 0.92858 1.36419 1.05137 0.90621 1.24967 0.98465
0.93887 0.94207 1.69946 1.14587 1.38957 1.29578 0.86512 0.79203
0.81327 0.80689 1.19212 1.23131 1.19673 1.59638 1.52385 1.04349
1.01154 1.22285 0.96968 0.86896 1.04109 1.19888 0.85706 0.89655
0.88494 1.68059 1.15350 1.09182 1.32316 1.21979 0.95270 0.97384
0.86868 1.20287 1.08552 0.97297 0.99211 1.18803 0.99701 0.95721
0.87551 1.19450 1.06727 0.95968 0.93352 1.70310 1.17560 1.20711
1.08499 1.25371 0.98822 0.90895 0.90903 1.45171 1.46275 1.21062
1.06243 1.21904 1.03212 1.02521 0.78242 0.92436 0.93212 0.94293
0.92659 0.88789 0.91093 0.95466 0.82826 0.86067 0.77212 0.90963
0.89534 0.90019
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.48 8.22 37.16 0.31 -3.18 16
2 C 0.18 4.44 1.33 -68.87 -0.09 4.35 16
3 H 0.06 1.54 6.43 -51.93 -0.33 1.21 16
4 C -0.52 -14.77 7.80 -34.44 -0.27 -15.04 16
5 H 0.08 2.31 7.99 -52.49 -0.42 1.89 16
6 C 0.09 2.66 5.46 -17.82 -0.10 2.56 16
7 N -0.89 -27.73 13.96 55.43 0.77 -26.95 16
8 Si 0.89 24.31 26.37 -169.99 -4.48 19.82 16
9 H -0.27 -7.42 7.11 56.52 0.40 -7.02 16
10 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16
11 H -0.27 -7.39 6.54 56.52 0.37 -7.02 16
12 N -0.46 -11.16 3.05 -174.47 -0.53 -11.69 16
13 C 0.04 0.95 8.67 60.07 0.52 1.47 16
14 C 0.41 8.91 6.02 -154.84 -0.93 7.97 16
15 N -0.53 -10.77 6.52 -12.46 -0.08 -10.86 16
16 C 0.14 2.17 11.10 -17.89 -0.20 1.97 16
17 C -0.23 -3.26 10.08 -39.76 -0.40 -3.66 16
18 C 0.10 1.60 6.92 -84.08 -0.58 1.02 16
19 C -0.03 -0.63 6.52 -84.56 -0.55 -1.18 16
20 N -0.45 -8.45 9.77 -11.88 -0.12 -8.56 16
21 C 0.23 3.00 12.51 -89.55 -1.12 1.87 16
22 N -0.50 -6.15 3.20 -123.12 -0.39 -6.55 16
23 C 0.08 0.56 11.19 59.85 0.67 1.23 16
24 H 0.06 1.20 5.59 -51.93 -0.29 0.91 16
25 H 0.05 1.06 8.14 -51.92 -0.42 0.63 16
26 H 0.04 0.84 6.73 -51.93 -0.35 0.49 16
27 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16
28 H 0.09 2.25 7.12 -51.93 -0.37 1.88 16
29 H 0.07 1.50 6.14 -51.93 -0.32 1.18 16
30 H 0.03 0.56 6.42 -51.93 -0.33 0.23 16
31 H 0.15 1.87 8.06 -52.49 -0.42 1.45 16
32 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16
33 H 0.21 1.71 8.06 -52.49 -0.42 1.28 16
34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16
35 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16
36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16
LS Contribution 290.91 15.07 4.38 4.38
Total: -1.00 -35.62 290.91 -7.74 -43.36
By element:
Atomic # 1 Polarization: 2.20 SS G_CDS: -4.54 Total: -2.34 kcal
Atomic # 6 Polarization: 2.13 SS G_CDS: -2.75 Total: -0.62 kcal
Atomic # 7 Polarization: -64.26 SS G_CDS: -0.35 Total: -64.61 kcal
Atomic # 14 Polarization: 24.31 SS G_CDS: -4.48 Total: 19.82 kcal
Total LS contribution 4.38 Total: 4.38 kcal
Total: -35.62 -7.74 -43.36 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000235424127.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 161.222 kcal
(2) G-P(sol) polarization free energy of solvation -35.625 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.597 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.736 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.360 kcal
(6) G-S(sol) free energy of system = (1) + (5) 117.862 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.35 seconds