Wall clock time and date at job start Mon Mar 30 2020 05:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09002 * 109.47327 * 2 1 4 4 C 1.50702 * 109.46946 * 240.00427 * 2 1 3 5 5 H 1.08001 * 120.00541 * 356.31768 * 4 2 1 6 6 C 1.37882 * 119.99703 * 176.32195 * 4 2 1 7 7 N 1.31515 * 120.00005 * 173.94238 * 6 4 2 8 8 Si 1.86803 * 120.00059 * 353.94182 * 6 4 2 9 9 H 1.48496 * 109.46819 * 85.12843 * 8 6 4 10 10 H 1.48495 * 109.46793 * 205.12721 * 8 6 4 11 11 H 1.48505 * 109.47061 * 325.12548 * 8 6 4 12 12 N 1.46892 * 109.47072 * 120.00111 * 2 1 3 13 13 C 1.46904 * 111.00172 * 58.95602 * 12 2 1 14 14 C 1.38861 * 111.00261 * 294.99972 * 12 2 1 15 15 N 1.32246 * 120.01216 * 0.02562 * 14 12 2 16 16 C 1.32369 * 122.25891 * 180.02562 * 15 14 12 17 17 C 1.36656 * 121.50348 * 359.97042 * 16 15 14 18 18 C 1.39306 * 119.07749 * 0.02856 * 17 16 15 19 19 C 1.40307 * 120.01520 * 179.72784 * 14 12 2 20 20 N 1.35559 * 134.52620 * 0.71075 * 19 14 12 21 21 C 1.30140 * 109.58450 * 179.53878 * 20 19 14 22 22 N 1.36265 * 110.01897 * 359.73501 * 21 20 19 23 23 C 1.46504 * 126.33782 * 179.97438 * 22 21 20 24 24 H 1.08993 * 109.47384 * 293.92952 * 1 2 3 25 25 H 1.09007 * 109.46995 * 53.92338 * 1 2 3 26 26 H 1.08996 * 109.47145 * 173.92321 * 1 2 3 27 27 H 0.96994 * 120.00229 * 179.97438 * 7 6 4 28 28 H 1.09003 * 109.46869 * 59.99467 * 13 12 2 29 29 H 1.09001 * 109.47321 * 179.97438 * 13 12 2 30 30 H 1.08995 * 109.46796 * 300.00178 * 13 12 2 31 31 H 1.07993 * 119.24838 * 179.97438 * 16 15 14 32 32 H 1.08000 * 120.45971 * 180.02562 * 17 16 15 33 33 H 1.07999 * 124.98594 * 179.77001 * 21 20 19 34 34 H 1.08998 * 109.47380 * 270.02993 * 23 22 21 35 35 H 1.09000 * 109.47139 * 30.02598 * 23 22 21 36 36 H 1.09001 * 109.46768 * 150.02592 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 1.3324 -1.1725 -1.9109 6 6 3.3856 -0.7703 -1.4877 7 7 3.8324 -1.4895 -2.4941 8 14 4.5844 0.1699 -0.4068 9 1 4.9219 -0.6482 0.7857 10 1 5.8217 0.4590 -1.1752 11 1 3.9623 1.4462 0.0284 12 7 2.0196 -0.6925 1.1994 13 6 1.5283 -2.0761 1.2459 14 6 1.6690 -0.0009 2.3513 15 7 0.9817 1.1254 2.2633 16 6 0.6245 1.8205 3.3317 17 6 0.9490 1.4078 4.5934 18 6 1.6728 0.2285 4.7548 19 6 2.0384 -0.5002 3.6095 20 7 2.7277 -1.5867 4.0361 21 6 2.7975 -1.5764 5.3356 22 7 2.1609 -0.4770 5.8283 23 6 2.0231 -0.1139 7.2409 24 1 -0.3634 0.4168 0.9393 25 1 -0.3633 0.6052 -0.8307 26 1 -0.3633 -1.0218 -0.1088 27 1 4.7844 -1.5315 -2.6753 28 1 1.8762 -2.6150 0.3645 29 1 1.9060 -2.5659 2.1434 30 1 0.4385 -2.0743 1.2638 31 1 0.0639 2.7345 3.2034 32 1 0.6486 1.9879 5.4534 33 1 3.2883 -2.3286 5.9353 34 1 1.1110 -0.5555 7.6423 35 1 2.8828 -0.4870 7.7975 36 1 1.9731 0.9710 7.3339 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000235424127.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:08:13 Heat of formation + Delta-G solvation = 94.494035 kcal Electronic energy + Delta-G solvation = -19971.796623 eV Core-core repulsion = 17071.136361 eV Total energy + Delta-G solvation = -2900.660262 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -43.28109 -40.45901 -38.04363 -35.24714 -34.45932 -32.03785 -31.99278 -29.89750 -27.88067 -27.45886 -26.90677 -24.24818 -23.72052 -22.06531 -20.79793 -19.08508 -18.34078 -18.30746 -17.25614 -16.89373 -16.51463 -15.97950 -15.65857 -15.51873 -15.06612 -14.83297 -14.59792 -14.21160 -13.83826 -13.69039 -13.36301 -13.13607 -12.97843 -12.84619 -12.73318 -12.42792 -11.95301 -11.76142 -11.49077 -11.22711 -11.01635 -10.76966 -10.31009 -10.02840 -9.81844 -8.51168 -8.30432 -6.37863 -0.04222 0.52289 1.32489 1.41397 1.50924 1.70503 1.87384 2.40110 2.71101 2.96654 3.21797 3.35999 3.69086 3.81066 4.00818 4.18449 4.24494 4.47893 4.52202 4.55257 4.57051 4.65931 4.74781 4.80222 4.84989 4.90455 5.11404 5.23087 5.29301 5.35593 5.41282 5.62871 5.74110 5.89833 6.22371 6.31810 6.49771 6.74386 6.94181 7.28507 7.35477 8.81830 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.026193 B = 0.007444 C = 0.006805 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.731806 B = 3760.419940 C = 4113.706449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.187 3.813 3 H 0.038 0.962 4 C -0.512 4.512 5 H 0.045 0.955 6 C 0.047 3.953 7 N -0.934 5.934 8 Si 0.953 3.047 9 H -0.278 1.278 10 H -0.297 1.297 11 H -0.274 1.274 12 N -0.485 5.485 13 C 0.058 3.942 14 C 0.363 3.637 15 N -0.553 5.553 16 C 0.112 3.888 17 C -0.195 4.195 18 C 0.089 3.911 19 C -0.058 4.058 20 N -0.518 5.518 21 C 0.254 3.746 22 N -0.487 5.487 23 C 0.074 3.926 24 H 0.072 0.928 25 H 0.051 0.949 26 H 0.035 0.965 27 H 0.266 0.734 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.032 0.968 31 H 0.189 0.811 32 H 0.168 0.832 33 H 0.261 0.739 34 H 0.090 0.910 35 H 0.117 0.883 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.166 4.164 25.114 25.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.082 3.918 3 H 0.056 0.944 4 C -0.550 4.550 5 H 0.063 0.937 6 C -0.153 4.153 7 N -0.574 5.574 8 Si 0.782 3.218 9 H -0.204 1.204 10 H -0.224 1.224 11 H -0.199 1.199 12 N -0.200 5.200 13 C -0.088 4.088 14 C 0.122 3.878 15 N -0.272 5.272 16 C -0.038 4.038 17 C -0.220 4.220 18 C -0.030 4.030 19 C -0.180 4.180 20 N -0.237 5.237 21 C -0.032 4.032 22 N -0.177 5.177 23 C -0.066 4.066 24 H 0.091 0.909 25 H 0.070 0.930 26 H 0.054 0.946 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.051 0.949 31 H 0.206 0.794 32 H 0.185 0.815 33 H 0.277 0.723 34 H 0.109 0.891 35 H 0.135 0.865 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.426 3.813 23.727 24.436 hybrid contribution 0.139 0.433 1.017 1.114 sum -4.287 4.245 24.745 25.470 Atomic orbital electron populations 1.22134 0.96479 0.99901 1.01911 1.19522 0.92820 0.93910 0.85536 0.94404 1.21167 0.92298 1.35477 1.06089 0.93672 1.25524 0.99908 0.94732 0.95173 1.70033 1.15002 1.40935 1.31381 0.85589 0.77632 0.79837 0.78747 1.20352 1.22416 1.19934 1.59362 1.54463 1.04575 1.01627 1.22094 0.97129 0.86711 1.02863 1.19766 0.88778 0.90890 0.88403 1.67886 1.15429 1.08946 1.34901 1.22589 0.96072 0.98455 0.86676 1.20751 1.05133 0.96018 1.00080 1.19067 0.99962 0.96159 0.87788 1.19556 1.07452 0.97272 0.93738 1.70253 1.20203 1.21841 1.11425 1.26356 0.95975 0.90924 0.89915 1.45531 1.44635 1.19920 1.07649 1.22375 1.05619 1.03718 0.74860 0.90912 0.93017 0.94618 0.92465 0.91820 0.90244 0.94950 0.79371 0.81464 0.72333 0.89130 0.86493 0.88875 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.58 8.22 71.98 0.59 -5.99 16 2 C 0.19 9.73 1.33 44.17 0.06 9.79 16 3 H 0.04 2.11 6.43 -2.39 -0.02 2.09 16 4 C -0.51 -30.71 7.80 25.60 0.20 -30.51 16 5 H 0.05 2.92 7.99 -2.91 -0.02 2.89 16 6 C 0.05 2.91 5.46 84.66 0.46 3.37 16 7 N -0.93 -60.18 13.96 21.45 0.30 -59.88 16 8 Si 0.95 52.29 26.37 68.60 1.81 54.10 16 9 H -0.28 -15.60 7.11 99.48 0.71 -14.89 16 10 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16 11 H -0.27 -14.97 6.54 99.48 0.65 -14.32 16 12 N -0.48 -24.08 3.05 -705.90 -2.15 -26.24 16 13 C 0.06 2.68 8.67 127.69 1.11 3.79 16 14 C 0.36 15.96 6.02 133.45 0.80 16.76 16 15 N -0.55 -22.04 6.52 -193.33 -1.26 -23.30 16 16 C 0.11 3.26 11.10 84.24 0.93 4.19 16 17 C -0.19 -4.76 10.08 22.16 0.22 -4.53 16 18 C 0.09 2.57 6.92 39.10 0.27 2.84 16 19 C -0.06 -2.24 6.52 39.64 0.26 -1.98 16 20 N -0.52 -18.59 9.77 -191.49 -1.87 -20.46 16 21 C 0.25 5.79 12.51 179.97 2.25 8.04 16 22 N -0.49 -9.81 3.20 -543.45 -1.74 -11.55 16 23 C 0.07 0.54 11.19 127.77 1.43 1.97 16 24 H 0.07 3.05 5.59 -2.39 -0.01 3.04 16 25 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16 26 H 0.03 1.59 6.73 -2.39 -0.02 1.57 16 27 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16 28 H 0.06 3.25 7.12 -2.39 -0.02 3.23 16 29 H 0.08 3.49 6.14 -2.39 -0.01 3.47 16 30 H 0.03 1.40 6.42 -2.39 -0.02 1.38 16 31 H 0.19 3.90 8.06 -2.91 -0.02 3.88 16 32 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16 33 H 0.26 2.82 8.06 -2.91 -0.02 2.79 16 34 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 35 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -82.90 290.91 4.71 -78.18 By element: Atomic # 1 Polarization: 0.37 SS G_CDS: 1.03 Total: 1.40 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 8.59 Total: 7.74 kcal Atomic # 7 Polarization: -134.70 SS G_CDS: -6.72 Total: -141.42 kcal Atomic # 14 Polarization: 52.29 SS G_CDS: 1.81 Total: 54.10 kcal Total: -82.90 4.71 -78.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000235424127.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 172.678 kcal (2) G-P(sol) polarization free energy of solvation -82.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.494 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds