Wall clock time and date at job start Mon Mar 30 2020 05:08:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 H 1.09002 * 109.47327 * 2 1
4 4 C 1.50702 * 109.46946 * 240.00427 * 2 1 3
5 5 H 1.08001 * 120.00541 * 356.31768 * 4 2 1
6 6 C 1.37882 * 119.99703 * 176.32195 * 4 2 1
7 7 N 1.31515 * 120.00005 * 173.94238 * 6 4 2
8 8 Si 1.86803 * 120.00059 * 353.94182 * 6 4 2
9 9 H 1.48496 * 109.46819 * 85.12843 * 8 6 4
10 10 H 1.48495 * 109.46793 * 205.12721 * 8 6 4
11 11 H 1.48505 * 109.47061 * 325.12548 * 8 6 4
12 12 N 1.46892 * 109.47072 * 120.00111 * 2 1 3
13 13 C 1.46904 * 111.00172 * 58.95602 * 12 2 1
14 14 C 1.38861 * 111.00261 * 294.99972 * 12 2 1
15 15 N 1.32246 * 120.01216 * 0.02562 * 14 12 2
16 16 C 1.32369 * 122.25891 * 180.02562 * 15 14 12
17 17 C 1.36656 * 121.50348 * 359.97042 * 16 15 14
18 18 C 1.39306 * 119.07749 * 0.02856 * 17 16 15
19 19 C 1.40307 * 120.01520 * 179.72784 * 14 12 2
20 20 N 1.35559 * 134.52620 * 0.71075 * 19 14 12
21 21 C 1.30140 * 109.58450 * 179.53878 * 20 19 14
22 22 N 1.36265 * 110.01897 * 359.73501 * 21 20 19
23 23 C 1.46504 * 126.33782 * 179.97438 * 22 21 20
24 24 H 1.08993 * 109.47384 * 293.92952 * 1 2 3
25 25 H 1.09007 * 109.46995 * 53.92338 * 1 2 3
26 26 H 1.08996 * 109.47145 * 173.92321 * 1 2 3
27 27 H 0.96994 * 120.00229 * 179.97438 * 7 6 4
28 28 H 1.09003 * 109.46869 * 59.99467 * 13 12 2
29 29 H 1.09001 * 109.47321 * 179.97438 * 13 12 2
30 30 H 1.08995 * 109.46796 * 300.00178 * 13 12 2
31 31 H 1.07993 * 119.24838 * 179.97438 * 16 15 14
32 32 H 1.08000 * 120.45971 * 180.02562 * 17 16 15
33 33 H 1.07999 * 124.98594 * 179.77001 * 21 20 19
34 34 H 1.08998 * 109.47380 * 270.02993 * 23 22 21
35 35 H 1.09000 * 109.47139 * 30.02598 * 23 22 21
36 36 H 1.09001 * 109.46768 * 150.02592 * 23 22 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0277 0.0000
4 6 2.0323 -0.7103 -1.2305
5 1 1.3324 -1.1725 -1.9109
6 6 3.3856 -0.7703 -1.4877
7 7 3.8324 -1.4895 -2.4941
8 14 4.5844 0.1699 -0.4068
9 1 4.9219 -0.6482 0.7857
10 1 5.8217 0.4590 -1.1752
11 1 3.9623 1.4462 0.0284
12 7 2.0196 -0.6925 1.1994
13 6 1.5283 -2.0761 1.2459
14 6 1.6690 -0.0009 2.3513
15 7 0.9817 1.1254 2.2633
16 6 0.6245 1.8205 3.3317
17 6 0.9490 1.4078 4.5934
18 6 1.6728 0.2285 4.7548
19 6 2.0384 -0.5002 3.6095
20 7 2.7277 -1.5867 4.0361
21 6 2.7975 -1.5764 5.3356
22 7 2.1609 -0.4770 5.8283
23 6 2.0231 -0.1139 7.2409
24 1 -0.3634 0.4168 0.9393
25 1 -0.3633 0.6052 -0.8307
26 1 -0.3633 -1.0218 -0.1088
27 1 4.7844 -1.5315 -2.6753
28 1 1.8762 -2.6150 0.3645
29 1 1.9060 -2.5659 2.1434
30 1 0.4385 -2.0743 1.2638
31 1 0.0639 2.7345 3.2034
32 1 0.6486 1.9879 5.4534
33 1 3.2883 -2.3286 5.9353
34 1 1.1110 -0.5555 7.6423
35 1 2.8828 -0.4870 7.7975
36 1 1.9731 0.9710 7.3339
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000235424127.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:08:13
Heat of formation + Delta-G solvation = 94.494035 kcal
Electronic energy + Delta-G solvation = -19971.796623 eV
Core-core repulsion = 17071.136361 eV
Total energy + Delta-G solvation = -2900.660262 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.133 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-43.28109 -40.45901 -38.04363 -35.24714 -34.45932 -32.03785 -31.99278 -29.89750
-27.88067 -27.45886 -26.90677 -24.24818 -23.72052 -22.06531 -20.79793 -19.08508
-18.34078 -18.30746 -17.25614 -16.89373 -16.51463 -15.97950 -15.65857 -15.51873
-15.06612 -14.83297 -14.59792 -14.21160 -13.83826 -13.69039 -13.36301 -13.13607
-12.97843 -12.84619 -12.73318 -12.42792 -11.95301 -11.76142 -11.49077 -11.22711
-11.01635 -10.76966 -10.31009 -10.02840 -9.81844 -8.51168 -8.30432 -6.37863
-0.04222 0.52289 1.32489 1.41397 1.50924 1.70503 1.87384 2.40110
2.71101 2.96654 3.21797 3.35999 3.69086 3.81066 4.00818 4.18449
4.24494 4.47893 4.52202 4.55257 4.57051 4.65931 4.74781 4.80222
4.84989 4.90455 5.11404 5.23087 5.29301 5.35593 5.41282 5.62871
5.74110 5.89833 6.22371 6.31810 6.49771 6.74386 6.94181 7.28507
7.35477 8.81830
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.026193 B = 0.007444 C = 0.006805
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1068.731806 B = 3760.419940 C = 4113.706449
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.187 3.813
3 H 0.038 0.962
4 C -0.512 4.512
5 H 0.045 0.955
6 C 0.047 3.953
7 N -0.934 5.934
8 Si 0.953 3.047
9 H -0.278 1.278
10 H -0.297 1.297
11 H -0.274 1.274
12 N -0.485 5.485
13 C 0.058 3.942
14 C 0.363 3.637
15 N -0.553 5.553
16 C 0.112 3.888
17 C -0.195 4.195
18 C 0.089 3.911
19 C -0.058 4.058
20 N -0.518 5.518
21 C 0.254 3.746
22 N -0.487 5.487
23 C 0.074 3.926
24 H 0.072 0.928
25 H 0.051 0.949
26 H 0.035 0.965
27 H 0.266 0.734
28 H 0.063 0.937
29 H 0.079 0.921
30 H 0.032 0.968
31 H 0.189 0.811
32 H 0.168 0.832
33 H 0.261 0.739
34 H 0.090 0.910
35 H 0.117 0.883
36 H 0.093 0.907
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -5.166 4.164 25.114 25.976
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.082 3.918
3 H 0.056 0.944
4 C -0.550 4.550
5 H 0.063 0.937
6 C -0.153 4.153
7 N -0.574 5.574
8 Si 0.782 3.218
9 H -0.204 1.204
10 H -0.224 1.224
11 H -0.199 1.199
12 N -0.200 5.200
13 C -0.088 4.088
14 C 0.122 3.878
15 N -0.272 5.272
16 C -0.038 4.038
17 C -0.220 4.220
18 C -0.030 4.030
19 C -0.180 4.180
20 N -0.237 5.237
21 C -0.032 4.032
22 N -0.177 5.177
23 C -0.066 4.066
24 H 0.091 0.909
25 H 0.070 0.930
26 H 0.054 0.946
27 H 0.075 0.925
28 H 0.082 0.918
29 H 0.098 0.902
30 H 0.051 0.949
31 H 0.206 0.794
32 H 0.185 0.815
33 H 0.277 0.723
34 H 0.109 0.891
35 H 0.135 0.865
36 H 0.111 0.889
Dipole moment (debyes) X Y Z Total
from point charges -4.426 3.813 23.727 24.436
hybrid contribution 0.139 0.433 1.017 1.114
sum -4.287 4.245 24.745 25.470
Atomic orbital electron populations
1.22134 0.96479 0.99901 1.01911 1.19522 0.92820 0.93910 0.85536
0.94404 1.21167 0.92298 1.35477 1.06089 0.93672 1.25524 0.99908
0.94732 0.95173 1.70033 1.15002 1.40935 1.31381 0.85589 0.77632
0.79837 0.78747 1.20352 1.22416 1.19934 1.59362 1.54463 1.04575
1.01627 1.22094 0.97129 0.86711 1.02863 1.19766 0.88778 0.90890
0.88403 1.67886 1.15429 1.08946 1.34901 1.22589 0.96072 0.98455
0.86676 1.20751 1.05133 0.96018 1.00080 1.19067 0.99962 0.96159
0.87788 1.19556 1.07452 0.97272 0.93738 1.70253 1.20203 1.21841
1.11425 1.26356 0.95975 0.90924 0.89915 1.45531 1.44635 1.19920
1.07649 1.22375 1.05619 1.03718 0.74860 0.90912 0.93017 0.94618
0.92465 0.91820 0.90244 0.94950 0.79371 0.81464 0.72333 0.89130
0.86493 0.88875
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -6.58 8.22 71.98 0.59 -5.99 16
2 C 0.19 9.73 1.33 44.17 0.06 9.79 16
3 H 0.04 2.11 6.43 -2.39 -0.02 2.09 16
4 C -0.51 -30.71 7.80 25.60 0.20 -30.51 16
5 H 0.05 2.92 7.99 -2.91 -0.02 2.89 16
6 C 0.05 2.91 5.46 84.66 0.46 3.37 16
7 N -0.93 -60.18 13.96 21.45 0.30 -59.88 16
8 Si 0.95 52.29 26.37 68.60 1.81 54.10 16
9 H -0.28 -15.60 7.11 99.48 0.71 -14.89 16
10 H -0.30 -15.67 7.11 99.48 0.71 -14.96 16
11 H -0.27 -14.97 6.54 99.48 0.65 -14.32 16
12 N -0.48 -24.08 3.05 -705.90 -2.15 -26.24 16
13 C 0.06 2.68 8.67 127.69 1.11 3.79 16
14 C 0.36 15.96 6.02 133.45 0.80 16.76 16
15 N -0.55 -22.04 6.52 -193.33 -1.26 -23.30 16
16 C 0.11 3.26 11.10 84.24 0.93 4.19 16
17 C -0.19 -4.76 10.08 22.16 0.22 -4.53 16
18 C 0.09 2.57 6.92 39.10 0.27 2.84 16
19 C -0.06 -2.24 6.52 39.64 0.26 -1.98 16
20 N -0.52 -18.59 9.77 -191.49 -1.87 -20.46 16
21 C 0.25 5.79 12.51 179.97 2.25 8.04 16
22 N -0.49 -9.81 3.20 -543.45 -1.74 -11.55 16
23 C 0.07 0.54 11.19 127.77 1.43 1.97 16
24 H 0.07 3.05 5.59 -2.39 -0.01 3.04 16
25 H 0.05 2.24 8.14 -2.38 -0.02 2.22 16
26 H 0.03 1.59 6.73 -2.39 -0.02 1.57 16
27 H 0.27 16.18 8.31 -92.71 -0.77 15.41 16
28 H 0.06 3.25 7.12 -2.39 -0.02 3.23 16
29 H 0.08 3.49 6.14 -2.39 -0.01 3.47 16
30 H 0.03 1.40 6.42 -2.39 -0.02 1.38 16
31 H 0.19 3.90 8.06 -2.91 -0.02 3.88 16
32 H 0.17 2.49 8.06 -2.91 -0.02 2.46 16
33 H 0.26 2.82 8.06 -2.91 -0.02 2.79 16
34 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16
35 H 0.12 0.22 8.14 -2.39 -0.02 0.20 16
36 H 0.09 0.54 8.14 -2.39 -0.02 0.52 16
Total: -1.00 -82.90 290.91 4.71 -78.18
By element:
Atomic # 1 Polarization: 0.37 SS G_CDS: 1.03 Total: 1.40 kcal
Atomic # 6 Polarization: -0.85 SS G_CDS: 8.59 Total: 7.74 kcal
Atomic # 7 Polarization: -134.70 SS G_CDS: -6.72 Total: -141.42 kcal
Atomic # 14 Polarization: 52.29 SS G_CDS: 1.81 Total: 54.10 kcal
Total: -82.90 4.71 -78.18 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000235424127.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 172.678 kcal
(2) G-P(sol) polarization free energy of solvation -82.896 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.782 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.712 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.184 kcal
(6) G-S(sol) free energy of system = (1) + (5) 94.494 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.38 seconds