Wall clock time and date at job start Mon Mar 30 2020 04:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38471 * 119.81503 * 2 1 4 4 C 1.37825 * 120.18338 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.09401 * 180.02562 * 4 3 2 6 6 C 1.40007 * 119.81456 * 0.02562 * 4 3 2 7 7 C 1.47052 * 120.18209 * 180.02562 * 6 4 3 8 8 N 1.30440 * 120.00062 * 354.24887 * 7 6 4 9 9 N 1.40106 * 120.00349 * 180.27501 * 8 7 6 10 10 C 1.34771 * 119.99922 * 179.97438 * 9 8 7 11 11 O 1.21914 * 120.00332 * 0.02562 * 10 9 8 12 12 C 1.41054 * 119.99771 * 180.02562 * 10 9 8 13 13 H 1.08007 * 120.00114 * 0.02562 * 12 10 9 14 14 C 1.40229 * 120.00336 * 180.02562 * 12 10 9 15 15 N 1.30583 * 119.99474 * 359.97438 * 14 12 10 16 16 Si 1.86793 * 120.00215 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47358 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47312 * 119.99460 * 16 14 12 19 19 H 1.48498 * 109.47167 * 239.99794 * 16 14 12 20 20 C 1.40013 * 119.63604 * 0.27215 * 6 4 3 21 21 C 1.50702 * 120.09110 * 179.72665 * 20 6 4 22 22 C 1.37823 * 119.81169 * 359.40669 * 20 6 4 23 23 H 1.08994 * 109.47549 * 90.00315 * 1 2 3 24 24 H 1.09004 * 109.46860 * 210.00322 * 1 2 3 25 25 H 1.08996 * 109.47183 * 329.99737 * 1 2 3 26 26 H 1.08001 * 119.91161 * 0.02562 * 3 2 1 27 27 H 1.09007 * 109.46954 * 263.00222 * 5 4 3 28 28 H 1.08995 * 109.47169 * 22.99964 * 5 4 3 29 29 H 1.09000 * 109.47498 * 143.00576 * 5 4 3 30 30 H 1.07999 * 119.99904 * 174.52819 * 7 6 4 31 31 H 0.96995 * 119.99402 * 0.02562 * 9 8 7 32 32 H 0.97001 * 119.99914 * 180.02562 * 15 14 12 33 33 H 1.09006 * 109.46943 * 84.52857 * 21 20 6 34 34 H 1.08997 * 109.46778 * 204.52329 * 21 20 6 35 35 H 1.08999 * 109.47424 * 324.52596 * 21 20 6 36 36 H 1.07999 * 119.90839 * 180.31284 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2014 0.0000 4 6 3.5737 1.2103 0.0005 5 6 4.3209 2.5190 0.0011 6 6 4.2776 0.0000 0.0005 7 6 5.7481 0.0000 0.0017 8 7 6.4004 1.1241 -0.1105 9 7 7.8015 1.1236 -0.1152 10 6 8.4753 2.2849 -0.2317 11 8 7.8658 3.3359 -0.3324 12 6 9.8858 2.2843 -0.2370 13 1 10.4258 1.3532 -0.1481 14 6 10.5871 3.4927 -0.3576 15 7 9.9342 4.6184 -0.4655 16 14 12.4550 3.4918 -0.3653 17 1 12.9500 2.0981 -0.2310 18 1 12.9451 4.0707 -1.6421 19 1 12.9551 4.3059 0.7715 20 6 3.5737 -1.2103 -0.0058 21 6 4.3210 -2.5190 -0.0121 22 6 2.1955 -1.2015 0.0004 23 1 -0.3634 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 1.6510 2.1341 0.0004 27 1 4.6102 2.7726 -1.0188 28 1 3.6795 3.3034 0.4026 29 1 5.2137 2.4274 0.6198 30 1 6.2880 -0.9310 0.0909 31 1 8.2863 0.2873 -0.0355 32 1 10.4192 5.4542 -0.5493 33 1 4.5859 -2.7910 1.0097 34 1 3.6894 -3.2959 -0.4427 35 1 5.2282 -2.4165 -0.6076 36 1 1.6510 -2.1342 0.0007 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254838939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:29 Heat of formation + Delta-G solvation = 16.920943 kcal Electronic energy + Delta-G solvation = -18502.263875 eV Core-core repulsion = 15565.947040 eV Total energy + Delta-G solvation = -2936.316835 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.52175 -37.57986 -35.44337 -33.52744 -33.18850 -32.52577 -30.34258 -27.70328 -27.30958 -26.46677 -25.89428 -22.06190 -20.51029 -20.04382 -19.53038 -17.53501 -16.60596 -15.70979 -15.39249 -14.67555 -14.23228 -14.18101 -13.96012 -13.34440 -13.12539 -12.88600 -12.72089 -12.65854 -12.60079 -12.51078 -12.21952 -11.51087 -11.41421 -11.27253 -11.05848 -11.01085 -10.77056 -10.67384 -10.64382 -10.34672 -9.06233 -9.04445 -8.57690 -8.30470 -7.76578 -7.18856 -6.40371 -4.94530 1.19730 1.64088 2.89573 3.04795 3.10701 3.15618 3.73355 4.05372 4.09811 4.44802 4.86740 4.95156 5.06373 5.16866 5.33643 5.37917 5.56144 5.61993 5.68729 5.75048 5.75883 5.81117 5.87564 6.02915 6.12210 6.23090 6.40733 6.45851 6.54521 6.73664 6.78306 7.01197 7.13181 7.20798 7.35620 7.84260 7.99834 8.68252 8.76690 9.29426 10.38766 10.64029 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.042107 B = 0.004011 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.809863 B = 6979.701053 C = 7615.204644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.132 4.132 4 C -0.044 4.044 5 C -0.113 4.113 6 C -0.035 4.035 7 C 0.016 3.984 8 N -0.180 5.180 9 N -0.594 5.594 10 C 0.558 3.442 11 O -0.552 6.552 12 C -0.537 4.537 13 H 0.071 0.929 14 C 0.088 3.912 15 N -0.745 5.745 16 Si 0.916 3.084 17 H -0.262 1.262 18 H -0.273 1.273 19 H -0.273 1.273 20 C -0.067 4.067 21 C -0.114 4.114 22 C -0.133 4.133 23 H 0.067 0.933 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.119 0.881 27 H 0.075 0.925 28 H 0.047 0.953 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.367 0.633 32 H 0.273 0.727 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.068 0.932 36 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.900 -11.397 1.190 16.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.087 4.087 3 C -0.150 4.150 4 C -0.047 4.047 5 C -0.169 4.169 6 C -0.037 4.037 7 C -0.192 4.192 8 N 0.009 4.991 9 N -0.339 5.339 10 C 0.366 3.634 11 O -0.431 6.431 12 C -0.574 4.574 13 H 0.089 0.911 14 C -0.135 4.135 15 N -0.372 5.372 16 Si 0.740 3.260 17 H -0.186 1.186 18 H -0.199 1.199 19 H -0.199 1.199 20 C -0.070 4.070 21 C -0.171 4.171 22 C -0.151 4.151 23 H 0.085 0.915 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.137 0.863 27 H 0.093 0.907 28 H 0.066 0.934 29 H 0.122 0.878 30 H 0.124 0.876 31 H 0.202 0.798 32 H 0.084 0.916 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -12.167 -9.379 0.992 15.395 hybrid contribution 1.388 -1.361 0.099 1.946 sum -10.780 -10.740 1.092 15.256 Atomic orbital electron populations 1.20755 0.91623 1.02382 1.01984 1.19928 0.95640 0.93141 0.99974 1.20840 0.93469 0.97316 1.03341 1.20323 0.93246 0.95490 0.95624 1.21102 1.00419 0.91368 1.04033 1.18238 0.90327 0.92278 1.02835 1.24033 0.93255 0.94385 1.07542 1.75117 0.94761 1.24423 1.04756 1.48228 0.98848 1.11385 1.75484 1.16869 0.87611 0.80591 0.78287 1.90701 1.69483 1.29430 1.53535 1.19864 0.90014 0.94573 1.52944 0.91121 1.25762 1.00592 0.94721 0.92459 1.70008 1.37055 0.98503 1.31647 0.86176 0.81977 0.79360 0.78492 1.18550 1.19854 1.19856 1.19866 0.93493 0.94088 0.99547 1.20794 1.00211 0.93765 1.02314 1.20633 0.93078 0.97189 1.04245 0.91472 0.91872 0.91763 0.86287 0.90682 0.93386 0.87840 0.87594 0.79770 0.91557 0.91181 0.91763 0.91264 0.86417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 10.00 36.01 0.36 -0.66 16 2 C -0.09 -1.08 5.89 -104.45 -0.62 -1.69 16 3 C -0.13 -1.90 9.31 -39.65 -0.37 -2.27 16 4 C -0.04 -0.76 5.92 -104.11 -0.62 -1.37 16 5 C -0.11 -2.16 8.61 36.01 0.31 -1.85 16 6 C -0.03 -0.58 5.88 -105.00 -0.62 -1.19 16 7 C 0.02 0.28 10.09 -14.57 -0.15 0.13 16 8 N -0.18 -4.02 7.00 32.16 0.23 -3.79 16 9 N -0.59 -14.12 6.26 28.99 0.18 -13.94 16 10 C 0.56 16.06 7.67 -15.19 -0.12 15.94 16 11 O -0.55 -18.05 15.21 5.00 0.08 -17.98 16 12 C -0.54 -14.79 9.28 -37.77 -0.35 -15.14 16 13 H 0.07 1.75 7.85 -52.48 -0.41 1.34 16 14 C 0.09 2.38 5.50 -17.33 -0.10 2.28 16 15 N -0.74 -21.66 11.71 55.56 0.65 -21.01 16 16 Si 0.92 19.31 29.56 -169.99 -5.02 14.29 16 17 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 18 H -0.27 -5.65 7.11 56.52 0.40 -5.24 16 19 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 20 C -0.07 -0.92 5.92 -104.11 -0.62 -1.53 16 21 C -0.11 -1.21 9.34 36.01 0.34 -0.87 16 22 C -0.13 -1.65 9.31 -39.64 -0.37 -2.02 16 23 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 24 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 25 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 26 H 0.12 1.51 8.05 -52.49 -0.42 1.09 16 27 H 0.07 1.56 8.14 -51.93 -0.42 1.14 16 28 H 0.05 0.81 8.04 -51.93 -0.42 0.39 16 29 H 0.10 2.32 5.68 -51.93 -0.29 2.03 16 30 H 0.11 1.61 6.56 -52.49 -0.34 1.26 16 31 H 0.37 7.40 8.61 -182.60 -1.57 5.83 16 32 H 0.27 7.11 8.29 -40.82 -0.34 6.77 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.06 0.56 8.05 -51.93 -0.42 0.14 16 35 H 0.07 0.74 6.73 -51.93 -0.35 0.39 16 36 H 0.12 1.15 8.06 -52.49 -0.42 0.73 16 LS Contribution 310.29 15.07 4.68 4.68 Total: -1.00 -33.68 310.29 -8.02 -41.70 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -5.90 Total: 6.30 kcal Atomic # 6 Polarization: -7.34 SS G_CDS: -2.91 Total: -10.25 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 1.06 Total: -38.74 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: 0.08 Total: -17.98 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.02 Total: 14.29 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.68 -8.02 -41.70 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254838939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.620 kcal (2) G-P(sol) polarization free energy of solvation -33.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.921 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds