Wall clock time and date at job start Mon Mar 30 2020 04:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38471 * 119.81503 * 2 1 4 4 C 1.37825 * 120.18338 * 179.97438 * 3 2 1 5 5 C 1.50701 * 120.09401 * 180.02562 * 4 3 2 6 6 C 1.40007 * 119.81456 * 0.02562 * 4 3 2 7 7 C 1.47052 * 120.18209 * 180.02562 * 6 4 3 8 8 N 1.30440 * 120.00062 * 354.24887 * 7 6 4 9 9 N 1.40106 * 120.00349 * 180.27501 * 8 7 6 10 10 C 1.34771 * 119.99922 * 179.97438 * 9 8 7 11 11 O 1.21914 * 120.00332 * 0.02562 * 10 9 8 12 12 C 1.41054 * 119.99771 * 180.02562 * 10 9 8 13 13 H 1.08007 * 120.00114 * 0.02562 * 12 10 9 14 14 C 1.40229 * 120.00336 * 180.02562 * 12 10 9 15 15 N 1.30583 * 119.99474 * 359.97438 * 14 12 10 16 16 Si 1.86793 * 120.00215 * 180.02562 * 14 12 10 17 17 H 1.48502 * 109.47358 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47312 * 119.99460 * 16 14 12 19 19 H 1.48498 * 109.47167 * 239.99794 * 16 14 12 20 20 C 1.40013 * 119.63604 * 0.27215 * 6 4 3 21 21 C 1.50702 * 120.09110 * 179.72665 * 20 6 4 22 22 C 1.37823 * 119.81169 * 359.40669 * 20 6 4 23 23 H 1.08994 * 109.47549 * 90.00315 * 1 2 3 24 24 H 1.09004 * 109.46860 * 210.00322 * 1 2 3 25 25 H 1.08996 * 109.47183 * 329.99737 * 1 2 3 26 26 H 1.08001 * 119.91161 * 0.02562 * 3 2 1 27 27 H 1.09007 * 109.46954 * 263.00222 * 5 4 3 28 28 H 1.08995 * 109.47169 * 22.99964 * 5 4 3 29 29 H 1.09000 * 109.47498 * 143.00576 * 5 4 3 30 30 H 1.07999 * 119.99904 * 174.52819 * 7 6 4 31 31 H 0.96995 * 119.99402 * 0.02562 * 9 8 7 32 32 H 0.97001 * 119.99914 * 180.02562 * 15 14 12 33 33 H 1.09006 * 109.46943 * 84.52857 * 21 20 6 34 34 H 1.08997 * 109.46778 * 204.52329 * 21 20 6 35 35 H 1.08999 * 109.47424 * 324.52596 * 21 20 6 36 36 H 1.07999 * 119.90839 * 180.31284 * 22 20 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.2014 0.0000 4 6 3.5737 1.2103 0.0005 5 6 4.3209 2.5190 0.0011 6 6 4.2776 0.0000 0.0005 7 6 5.7481 0.0000 0.0017 8 7 6.4004 1.1241 -0.1105 9 7 7.8015 1.1236 -0.1152 10 6 8.4753 2.2849 -0.2317 11 8 7.8658 3.3359 -0.3324 12 6 9.8858 2.2843 -0.2370 13 1 10.4258 1.3532 -0.1481 14 6 10.5871 3.4927 -0.3576 15 7 9.9342 4.6184 -0.4655 16 14 12.4550 3.4918 -0.3653 17 1 12.9500 2.0981 -0.2310 18 1 12.9451 4.0707 -1.6421 19 1 12.9551 4.3059 0.7715 20 6 3.5737 -1.2103 -0.0058 21 6 4.3210 -2.5190 -0.0121 22 6 2.1955 -1.2015 0.0004 23 1 -0.3634 -0.0001 -1.0276 24 1 -0.3633 -0.8900 0.5139 25 1 -0.3633 0.8899 0.5139 26 1 1.6510 2.1341 0.0004 27 1 4.6102 2.7726 -1.0188 28 1 3.6795 3.3034 0.4026 29 1 5.2137 2.4274 0.6198 30 1 6.2880 -0.9310 0.0909 31 1 8.2863 0.2873 -0.0355 32 1 10.4192 5.4542 -0.5493 33 1 4.5859 -2.7910 1.0097 34 1 3.6894 -3.2959 -0.4427 35 1 5.2282 -2.4165 -0.6076 36 1 1.6510 -2.1342 0.0007 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000254838939.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:18:29 Heat of formation + Delta-G solvation = -5.147043 kcal Electronic energy + Delta-G solvation = -18503.220815 eV Core-core repulsion = 15565.947040 eV Total energy + Delta-G solvation = -2937.273775 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.69839 -39.51754 -37.11633 -34.88697 -34.53176 -34.38398 -32.00671 -29.02039 -28.74413 -27.71869 -27.31735 -23.52858 -21.97487 -21.52639 -20.88806 -19.37211 -18.12551 -17.64737 -16.78971 -15.92624 -15.82323 -15.47853 -15.18955 -14.92565 -14.68188 -14.09102 -14.00221 -13.94381 -13.79275 -13.59012 -13.27694 -13.19582 -13.01692 -12.74656 -12.68544 -12.53442 -12.06103 -12.04003 -11.99625 -11.79849 -11.02333 -10.54002 -10.08059 -9.96623 -9.44483 -8.77978 -8.42668 -7.08591 -0.03846 0.51312 1.35981 1.38425 1.56756 1.58075 2.06661 2.35342 2.42560 2.89228 3.64767 3.78263 3.89534 3.92364 4.00727 4.31783 4.42593 4.60013 4.62086 4.72775 4.79670 4.84588 4.88432 4.92691 4.97917 5.06397 5.12261 5.18577 5.21624 5.39524 5.53232 5.66941 5.69454 5.80417 5.83495 6.04016 6.15760 6.68219 6.94827 7.44566 8.41376 8.59089 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.042107 B = 0.004011 C = 0.003676 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 664.809863 B = 6979.701053 C = 7615.204644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.072 4.072 3 C -0.145 4.145 4 C -0.063 4.063 5 C -0.102 4.102 6 C -0.077 4.077 7 C 0.057 3.943 8 N -0.244 5.244 9 N -0.601 5.601 10 C 0.545 3.455 11 O -0.611 6.611 12 C -0.563 4.563 13 H 0.093 0.907 14 C 0.030 3.970 15 N -0.801 5.801 16 Si 1.009 2.991 17 H -0.244 1.244 18 H -0.265 1.265 19 H -0.265 1.265 20 C -0.055 4.055 21 C -0.116 4.116 22 C -0.133 4.133 23 H 0.080 0.920 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.131 0.869 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.069 0.931 30 H 0.137 0.863 31 H 0.381 0.619 32 H 0.281 0.719 33 H 0.083 0.917 34 H 0.091 0.909 35 H 0.065 0.935 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.039 -14.699 1.439 19.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.073 4.073 3 C -0.163 4.163 4 C -0.065 4.065 5 C -0.159 4.159 6 C -0.079 4.079 7 C -0.151 4.151 8 N -0.052 5.052 9 N -0.346 5.346 10 C 0.354 3.646 11 O -0.496 6.496 12 C -0.599 4.599 13 H 0.111 0.889 14 C -0.189 4.189 15 N -0.429 5.429 16 Si 0.827 3.173 17 H -0.167 1.167 18 H -0.190 1.190 19 H -0.190 1.190 20 C -0.058 4.058 21 C -0.173 4.173 22 C -0.150 4.150 23 H 0.099 0.901 24 H 0.103 0.897 25 H 0.089 0.911 26 H 0.149 0.851 27 H 0.063 0.937 28 H 0.079 0.921 29 H 0.087 0.913 30 H 0.154 0.846 31 H 0.218 0.782 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.110 0.890 35 H 0.084 0.916 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -13.330 -12.747 1.248 18.486 hybrid contribution 1.372 -0.546 0.044 1.477 sum -11.958 -13.294 1.292 17.927 Atomic orbital electron populations 1.20852 0.88702 1.03889 1.03263 1.20417 0.97740 0.92372 0.96820 1.21025 0.92368 0.99104 1.03797 1.20275 0.94509 0.94431 0.97316 1.20857 0.99655 0.93839 1.01558 1.18433 0.89488 0.93654 1.06317 1.24696 0.94344 0.94541 1.01522 1.75299 0.93569 1.26554 1.09769 1.47518 1.00014 1.10580 1.76471 1.17252 0.88532 0.81028 0.77778 1.90638 1.70790 1.31807 1.56320 1.20410 0.90112 0.96130 1.53260 0.88865 1.27134 1.07160 0.93674 0.90885 1.70173 1.40161 0.99733 1.32816 0.84808 0.73358 0.80288 0.78816 1.16659 1.19015 1.19002 1.20252 0.94381 0.94037 0.97129 1.20907 1.00311 0.92671 1.03389 1.21119 0.92632 0.98649 1.02643 0.90106 0.89686 0.91076 0.85135 0.93665 0.92062 0.91289 0.84634 0.78166 0.90888 0.89813 0.88998 0.91569 0.82630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.54 10.00 71.24 0.71 -0.83 16 2 C -0.07 -1.57 5.89 -19.75 -0.12 -1.69 16 3 C -0.15 -4.02 9.31 22.23 0.21 -3.81 16 4 C -0.06 -2.19 5.92 -19.53 -0.12 -2.30 16 5 C -0.10 -4.25 8.61 71.24 0.61 -3.64 16 6 C -0.08 -2.51 5.88 -20.11 -0.12 -2.63 16 7 C 0.06 2.09 10.09 87.21 0.88 2.97 16 8 N -0.24 -11.55 7.00 -52.15 -0.37 -11.91 16 9 N -0.60 -30.17 6.26 -180.32 -1.13 -31.29 16 10 C 0.54 33.31 7.67 84.93 0.65 33.96 16 11 O -0.61 -43.07 15.21 -5.04 -0.08 -43.14 16 12 C -0.56 -32.07 9.28 23.44 0.22 -31.85 16 13 H 0.09 4.67 7.85 -2.91 -0.02 4.65 16 14 C 0.03 1.65 5.50 85.36 0.47 2.12 16 15 N -0.80 -48.85 11.71 21.87 0.26 -48.60 16 16 Si 1.01 39.93 29.56 68.60 2.03 41.96 16 17 H -0.24 -8.83 7.11 99.48 0.71 -8.12 16 18 H -0.27 -10.07 7.11 99.48 0.71 -9.36 16 19 H -0.27 -10.06 7.11 99.48 0.71 -9.35 16 20 C -0.06 -1.34 5.92 -19.53 -0.12 -1.46 16 21 C -0.12 -2.00 9.34 71.24 0.67 -1.33 16 22 C -0.13 -2.70 9.31 22.23 0.21 -2.50 16 23 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 24 H 0.08 0.87 8.08 -2.38 -0.02 0.85 16 25 H 0.07 0.94 8.08 -2.39 -0.02 0.92 16 26 H 0.13 3.20 8.05 -2.91 -0.02 3.18 16 27 H 0.04 2.08 8.14 -2.38 -0.02 2.06 16 28 H 0.06 2.24 8.04 -2.39 -0.02 2.22 16 29 H 0.07 3.40 5.68 -2.39 -0.01 3.39 16 30 H 0.14 3.95 6.56 -2.91 -0.02 3.93 16 31 H 0.38 15.93 8.61 -213.32 -1.84 14.10 16 32 H 0.28 15.27 8.29 -92.71 -0.77 14.50 16 33 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 34 H 0.09 1.11 8.05 -2.39 -0.02 1.09 16 35 H 0.07 1.19 6.73 -2.39 -0.02 1.18 16 36 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -80.64 310.29 4.13 -76.51 By element: Atomic # 1 Polarization: 30.21 SS G_CDS: -0.74 Total: 29.47 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 4.16 Total: -12.99 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -1.24 Total: -91.80 kcal Atomic # 8 Polarization: -43.07 SS G_CDS: -0.08 Total: -43.14 kcal Atomic # 14 Polarization: 39.93 SS G_CDS: 2.03 Total: 41.96 kcal Total: -80.64 4.13 -76.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254838939.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.365 kcal (2) G-P(sol) polarization free energy of solvation -80.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds