Wall clock time and date at job start Mon Mar 30 2020 04:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38348 * 119.46350 * 2 1 4 4 C 1.38352 * 119.30943 * 179.97438 * 3 2 1 5 5 C 1.40024 * 118.28114 * 359.97438 * 4 3 2 6 6 C 1.47846 * 120.55720 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99703 * 7.02014 * 6 5 4 8 8 N 1.34775 * 120.00381 * 187.01098 * 6 5 4 9 9 C 1.47423 * 125.64822 * 174.35256 * 8 6 5 10 10 C 1.54913 * 104.83111 * 155.91390 * 9 8 6 11 11 C 1.55157 * 101.58472 * 37.00474 * 10 9 8 12 12 H 1.09001 * 110.71842 * 83.03551 * 11 10 9 13 13 C 1.50693 * 110.72094 * 206.13717 * 11 10 9 14 14 H 1.08001 * 120.00436 * 357.56573 * 13 11 10 15 15 C 1.37885 * 120.00028 * 177.56063 * 13 11 10 16 16 N 1.31521 * 119.99523 * 359.97438 * 15 13 11 17 17 Si 1.86792 * 120.00098 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47212 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.46975 * 239.99803 * 17 15 13 20 20 H 1.48497 * 109.47264 * 120.00053 * 17 15 13 21 21 C 1.47321 * 125.61296 * 354.57885 * 8 6 5 22 22 C 1.39517 * 118.88737 * 0.27556 * 5 4 3 23 23 N 1.31692 * 120.56244 * 359.40786 * 22 5 4 24 24 H 1.09001 * 109.46921 * 89.99859 * 1 2 3 25 25 H 1.09005 * 109.47256 * 209.99763 * 1 2 3 26 26 H 1.08998 * 109.47155 * 330.00281 * 1 2 3 27 27 H 1.08004 * 120.34158 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.85992 * 180.02562 * 4 3 2 29 29 H 1.08997 * 110.36640 * 37.07158 * 9 8 6 30 30 H 1.09009 * 110.45852 * 274.79298 * 9 8 6 31 31 H 1.09001 * 110.99810 * 278.93597 * 10 9 8 32 32 H 1.08998 * 111.03831 * 155.10043 * 10 9 8 33 33 H 0.97000 * 120.00170 * 0.02562 * 16 15 13 34 34 H 1.09003 * 110.06018 * 61.67756 * 21 8 6 35 35 H 1.08995 * 109.84815 * 300.41798 * 21 8 6 36 36 H 1.08000 * 119.71932 * 179.72297 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2311 -0.0340 0.0016 6 6 5.7083 -0.0967 0.0017 7 8 6.3597 0.9215 0.1294 8 7 6.3325 -1.2828 -0.1398 9 6 7.7876 -1.4772 -0.2747 10 6 8.0406 -2.9268 0.2096 11 6 6.7846 -3.6597 -0.3313 12 1 6.9208 -3.9383 -1.3763 13 6 6.4735 -4.8733 0.5060 14 1 7.1209 -5.1433 1.3272 15 6 5.3622 -5.6393 0.2237 16 7 4.5735 -5.3102 -0.7760 17 14 4.9762 -7.1433 1.2620 18 1 6.0102 -7.2950 2.3171 19 1 4.9690 -8.3519 0.3991 20 1 3.6429 -6.9790 1.8949 21 6 5.6726 -2.5990 -0.1897 22 6 3.4716 -1.2043 -0.0038 23 7 2.1559 -1.1487 0.0019 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6443 2.1381 0.0004 28 1 4.1275 2.1264 0.0010 29 1 8.3251 -0.7678 0.3545 30 1 8.0920 -1.3665 -1.3155 31 1 8.0817 -2.9735 1.2978 32 1 8.9506 -3.3335 -0.2315 33 1 4.7738 -4.5290 -1.3150 34 1 5.0016 -2.6485 -1.0474 35 1 5.1140 -2.7681 0.7308 36 1 3.9669 -2.1641 -0.0075 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259834658.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:43 Heat of formation + Delta-G solvation = 10.867336 kcal Electronic energy + Delta-G solvation = -19400.484178 eV Core-core repulsion = 16463.904839 eV Total energy + Delta-G solvation = -2936.579339 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.56886 -38.98846 -37.03916 -33.35549 -33.07134 -32.26541 -30.73218 -28.59163 -27.41630 -25.25568 -23.55671 -23.13166 -21.65071 -20.29853 -19.53553 -17.61214 -16.69328 -16.31175 -15.72556 -15.63523 -14.95637 -14.44533 -13.97131 -13.82905 -13.65316 -13.15115 -13.11677 -12.71825 -12.39813 -12.34012 -12.18415 -12.06649 -11.83807 -11.24758 -10.84265 -10.75745 -10.20514 -10.18200 -9.80902 -9.75574 -9.71182 -9.15350 -8.87143 -8.72005 -8.53829 -8.17082 -6.50430 -4.26682 0.81716 1.35959 3.10732 3.34798 3.39699 3.42279 3.54923 4.00680 4.37271 4.42545 4.75777 4.83009 5.01434 5.07640 5.16801 5.38440 5.46890 5.51429 5.55480 5.62072 5.68812 5.79268 5.95325 5.99823 6.01733 6.11866 6.22121 6.33860 6.51086 6.57698 6.68357 6.74874 6.87029 7.30037 7.90219 7.98920 8.09672 8.27513 8.45282 8.68820 9.44246 10.85948 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.007383 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.685807 B = 3791.757184 C = 5253.002916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.140 3.860 3 C -0.190 4.190 4 C -0.019 4.019 5 C -0.193 4.193 6 C 0.573 3.427 7 O -0.558 6.558 8 N -0.606 5.606 9 C 0.106 3.894 10 C -0.121 4.121 11 C 0.027 3.973 12 H 0.036 0.964 13 C -0.597 4.597 14 H 0.057 0.943 15 C 0.022 3.978 16 N -0.903 5.903 17 Si 1.072 2.928 18 H -0.289 1.289 19 H -0.286 1.286 20 H -0.285 1.285 21 C 0.086 3.914 22 C 0.110 3.890 23 N -0.482 5.482 24 H 0.080 0.920 25 H 0.080 0.920 26 H 0.074 0.926 27 H 0.137 0.863 28 H 0.143 0.857 29 H 0.070 0.930 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.070 0.930 33 H 0.269 0.731 34 H 0.065 0.935 35 H 0.080 0.920 36 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.893 9.309 0.737 10.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.002 3.998 3 C -0.210 4.210 4 C -0.045 4.045 5 C -0.198 4.198 6 C 0.362 3.638 7 O -0.439 6.439 8 N -0.337 5.337 9 C -0.016 4.016 10 C -0.159 4.159 11 C 0.008 3.992 12 H 0.054 0.946 13 C -0.635 4.635 14 H 0.075 0.925 15 C -0.183 4.183 16 N -0.539 5.539 17 Si 0.901 3.099 18 H -0.215 1.215 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.035 4.035 22 C -0.047 4.047 23 N -0.191 5.191 24 H 0.098 0.902 25 H 0.099 0.901 26 H 0.093 0.907 27 H 0.155 0.845 28 H 0.161 0.839 29 H 0.088 0.912 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.098 0.902 36 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -5.143 7.881 0.995 9.463 hybrid contribution 1.510 2.098 -0.262 2.598 sum -3.633 9.979 0.732 10.645 Atomic orbital electron populations 1.20761 0.88786 1.03544 1.03200 1.21656 0.97351 0.88711 0.92049 1.21872 0.94426 0.99332 1.05360 1.21644 0.93989 0.97678 0.91189 1.20981 0.94557 0.95587 1.08636 1.17719 0.86628 0.82491 0.76988 1.90702 1.67140 1.33951 1.52088 1.48722 1.08741 1.06433 1.69852 1.22274 0.80411 0.98479 1.00455 1.22780 0.99604 0.92345 1.01141 1.19933 0.89070 0.92556 0.97611 0.94558 1.21951 1.13459 1.10605 1.17445 0.92456 1.25894 0.92922 1.01943 0.97569 1.70833 1.38219 1.27660 1.17147 0.83472 0.75973 0.75211 0.75285 1.21458 1.21214 1.21130 1.23350 0.98369 0.81187 1.00631 1.25198 0.89412 1.00649 0.89403 1.67786 1.09928 1.28481 1.12883 0.90187 0.90131 0.90747 0.84492 0.83920 0.91198 0.92026 0.91227 0.91095 0.91905 0.91674 0.90232 0.78063 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.11 10.16 36.01 0.37 -0.75 16 2 C 0.14 2.05 6.78 -82.51 -0.56 1.49 16 3 C -0.19 -2.50 9.72 -39.50 -0.38 -2.89 16 4 C -0.02 -0.28 9.72 -38.87 -0.38 -0.66 16 5 C -0.19 -3.52 5.89 -104.82 -0.62 -4.14 16 6 C 0.57 11.50 7.82 -12.33 -0.10 11.41 16 7 O -0.56 -12.08 16.67 5.32 0.09 -11.99 16 8 N -0.61 -12.07 3.33 -174.34 -0.58 -12.65 16 9 C 0.11 1.92 6.93 -2.53 -0.02 1.91 16 10 C -0.12 -2.29 6.50 -24.58 -0.16 -2.45 16 11 C 0.03 0.62 2.46 -89.94 -0.22 0.40 16 12 H 0.04 0.86 8.00 -51.93 -0.42 0.45 16 13 C -0.60 -15.15 8.38 -34.44 -0.29 -15.44 16 14 H 0.06 1.47 7.77 -52.49 -0.41 1.06 16 15 C 0.02 0.58 5.34 -17.81 -0.10 0.48 16 16 N -0.90 -24.83 13.45 55.43 0.75 -24.08 16 17 Si 1.07 23.71 29.90 -169.99 -5.08 18.63 16 18 H -0.29 -6.10 7.11 56.52 0.40 -5.70 16 19 H -0.29 -6.25 7.11 56.52 0.40 -5.85 16 20 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 21 C 0.09 1.83 3.48 -2.90 -0.01 1.82 16 22 C 0.11 2.10 9.81 -17.13 -0.17 1.93 16 23 N -0.48 -8.79 10.25 -9.14 -0.09 -8.88 16 24 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.07 0.59 8.07 -51.93 -0.42 0.17 16 27 H 0.14 1.29 8.06 -52.48 -0.42 0.87 16 28 H 0.14 2.00 7.75 -52.49 -0.41 1.59 16 29 H 0.07 1.22 7.99 -51.93 -0.41 0.81 16 30 H 0.06 1.04 8.14 -51.92 -0.42 0.62 16 31 H 0.07 1.35 8.03 -51.93 -0.42 0.93 16 32 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 33 H 0.27 7.24 5.63 -40.82 -0.23 7.01 16 34 H 0.07 1.41 5.63 -51.93 -0.29 1.12 16 35 H 0.08 1.81 6.43 -51.93 -0.33 1.47 16 36 H 0.20 4.16 2.76 -56.33 -0.16 4.00 16 LS Contribution 296.63 15.07 4.47 4.47 Total: -1.00 -29.67 296.63 -7.49 -37.15 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: -4.40 Total: 4.25 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.63 Total: -6.90 kcal Atomic # 7 Polarization: -45.68 SS G_CDS: 0.07 Total: -45.61 kcal Atomic # 8 Polarization: -12.08 SS G_CDS: 0.09 Total: -11.99 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.08 Total: 18.63 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.67 -7.49 -37.15 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259834658.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.019 kcal (2) G-P(sol) polarization free energy of solvation -29.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds