Wall clock time and date at job start Mon Mar 30 2020 04:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38348 * 119.46350 * 2 1 4 4 C 1.38352 * 119.30943 * 179.97438 * 3 2 1 5 5 C 1.40024 * 118.28114 * 359.97438 * 4 3 2 6 6 C 1.47846 * 120.55720 * 179.97438 * 5 4 3 7 7 O 1.21551 * 119.99703 * 7.02014 * 6 5 4 8 8 N 1.34775 * 120.00381 * 187.01098 * 6 5 4 9 9 C 1.47423 * 125.64822 * 174.35256 * 8 6 5 10 10 C 1.54913 * 104.83111 * 155.91390 * 9 8 6 11 11 C 1.55157 * 101.58472 * 37.00474 * 10 9 8 12 12 H 1.09001 * 110.71842 * 83.03551 * 11 10 9 13 13 C 1.50693 * 110.72094 * 206.13717 * 11 10 9 14 14 H 1.08001 * 120.00436 * 357.56573 * 13 11 10 15 15 C 1.37885 * 120.00028 * 177.56063 * 13 11 10 16 16 N 1.31521 * 119.99523 * 359.97438 * 15 13 11 17 17 Si 1.86792 * 120.00098 * 180.02562 * 15 13 11 18 18 H 1.48502 * 109.47212 * 359.97438 * 17 15 13 19 19 H 1.48507 * 109.46975 * 239.99803 * 17 15 13 20 20 H 1.48497 * 109.47264 * 120.00053 * 17 15 13 21 21 C 1.47321 * 125.61296 * 354.57885 * 8 6 5 22 22 C 1.39517 * 118.88737 * 0.27556 * 5 4 3 23 23 N 1.31692 * 120.56244 * 359.40786 * 22 5 4 24 24 H 1.09001 * 109.46921 * 89.99859 * 1 2 3 25 25 H 1.09005 * 109.47256 * 209.99763 * 1 2 3 26 26 H 1.08998 * 109.47155 * 330.00281 * 1 2 3 27 27 H 1.08004 * 120.34158 * 0.02562 * 3 2 1 28 28 H 1.07997 * 120.85992 * 180.02562 * 4 3 2 29 29 H 1.08997 * 110.36640 * 37.07158 * 9 8 6 30 30 H 1.09009 * 110.45852 * 274.79298 * 9 8 6 31 31 H 1.09001 * 110.99810 * 278.93597 * 10 9 8 32 32 H 1.08998 * 111.03831 * 155.10043 * 10 9 8 33 33 H 0.97000 * 120.00170 * 0.02562 * 16 15 13 34 34 H 1.09003 * 110.06018 * 61.67756 * 21 8 6 35 35 H 1.08995 * 109.84815 * 300.41798 * 21 8 6 36 36 H 1.08000 * 119.71932 * 179.72297 * 22 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1875 1.2046 0.0000 4 6 3.5710 1.2008 0.0005 5 6 4.2311 -0.0340 0.0016 6 6 5.7083 -0.0967 0.0017 7 8 6.3597 0.9215 0.1294 8 7 6.3325 -1.2828 -0.1398 9 6 7.7876 -1.4772 -0.2747 10 6 8.0406 -2.9268 0.2096 11 6 6.7846 -3.6597 -0.3313 12 1 6.9208 -3.9383 -1.3763 13 6 6.4735 -4.8733 0.5060 14 1 7.1209 -5.1433 1.3272 15 6 5.3622 -5.6393 0.2237 16 7 4.5735 -5.3102 -0.7760 17 14 4.9762 -7.1433 1.2620 18 1 6.0102 -7.2950 2.3171 19 1 4.9690 -8.3519 0.3991 20 1 3.6429 -6.9790 1.8949 21 6 5.6726 -2.5990 -0.1897 22 6 3.4716 -1.2043 -0.0038 23 7 2.1559 -1.1487 0.0019 24 1 -0.3633 0.0000 -1.0277 25 1 -0.3634 -0.8900 0.5138 26 1 -0.3633 0.8900 0.5138 27 1 1.6443 2.1381 0.0004 28 1 4.1275 2.1264 0.0010 29 1 8.3251 -0.7678 0.3545 30 1 8.0920 -1.3665 -1.3155 31 1 8.0817 -2.9735 1.2978 32 1 8.9506 -3.3335 -0.2315 33 1 4.7738 -4.5290 -1.3150 34 1 5.0016 -2.6485 -1.0474 35 1 5.1140 -2.7681 0.7308 36 1 3.9669 -2.1641 -0.0075 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259834658.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:42 Heat of formation + Delta-G solvation = -7.103606 kcal Electronic energy + Delta-G solvation = -19401.263457 eV Core-core repulsion = 16463.904839 eV Total energy + Delta-G solvation = -2937.358617 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.96900 -40.43456 -38.70029 -35.20313 -34.37134 -33.51482 -32.29059 -30.16599 -28.67437 -27.07381 -25.09627 -24.44291 -23.01876 -22.00840 -21.04511 -19.27100 -18.40517 -17.76834 -17.18810 -16.89854 -16.47541 -15.83559 -15.62201 -15.30073 -15.18476 -14.63158 -14.45546 -14.11066 -13.92094 -13.83446 -13.46348 -13.26983 -13.06950 -12.83489 -12.61808 -12.41331 -11.90641 -11.79027 -11.46924 -11.35051 -11.03461 -10.64399 -10.53711 -10.47861 -10.09955 -9.78727 -8.58005 -6.34376 -0.47660 0.13509 1.58169 1.63420 1.64458 1.80859 1.84411 2.58273 2.69899 3.14176 3.16824 3.42399 3.67056 3.76903 3.85102 3.93015 3.98758 4.17931 4.24947 4.28898 4.48714 4.59088 4.61145 4.67317 4.77455 4.84682 4.92356 4.96521 5.03577 5.12735 5.16260 5.21155 5.49916 5.58275 6.01900 6.20375 6.32513 6.62995 6.81762 6.91076 7.43331 8.79570 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.016867 B = 0.007383 C = 0.005329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.685807 B = 3791.757184 C = 5253.002916 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.134 3.866 3 C -0.169 4.169 4 C -0.020 4.020 5 C -0.214 4.214 6 C 0.571 3.429 7 O -0.576 6.576 8 N -0.611 5.611 9 C 0.106 3.894 10 C -0.109 4.109 11 C 0.016 3.984 12 H 0.020 0.980 13 C -0.604 4.604 14 H 0.053 0.947 15 C -0.022 4.022 16 N -0.928 5.928 17 Si 1.112 2.888 18 H -0.272 1.272 19 H -0.281 1.281 20 H -0.284 1.284 21 C 0.112 3.888 22 C 0.094 3.906 23 N -0.514 5.514 24 H 0.095 0.905 25 H 0.071 0.929 26 H 0.110 0.890 27 H 0.187 0.813 28 H 0.159 0.841 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.262 0.738 34 H 0.054 0.946 35 H 0.060 0.940 36 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.808 10.915 1.180 11.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.003 4.003 3 C -0.188 4.188 4 C -0.046 4.046 5 C -0.219 4.219 6 C 0.361 3.639 7 O -0.458 6.458 8 N -0.342 5.342 9 C -0.015 4.015 10 C -0.147 4.147 11 C -0.003 4.003 12 H 0.038 0.962 13 C -0.642 4.642 14 H 0.072 0.928 15 C -0.222 4.222 16 N -0.565 5.565 17 Si 0.935 3.065 18 H -0.197 1.197 19 H -0.207 1.207 20 H -0.211 1.211 21 C -0.010 4.010 22 C -0.063 4.063 23 N -0.224 5.224 24 H 0.114 0.886 25 H 0.090 0.910 26 H 0.129 0.871 27 H 0.205 0.795 28 H 0.176 0.824 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.083 0.917 32 H 0.111 0.889 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.033 9.493 1.437 11.340 hybrid contribution 1.725 1.675 -0.412 2.439 sum -4.308 11.168 1.025 12.014 Atomic orbital electron populations 1.20918 0.85615 1.04946 1.04558 1.22451 0.99399 0.88223 0.90245 1.22360 0.93471 1.00720 1.02250 1.21938 0.95222 0.96910 0.90534 1.20928 0.93429 0.96710 1.10822 1.18032 0.87497 0.82043 0.76279 1.90674 1.67766 1.34225 1.53164 1.48777 1.09441 1.06008 1.69954 1.22382 0.79569 0.98003 1.01584 1.22701 0.98783 0.92427 1.00825 1.19929 0.91452 0.92541 0.96414 0.96168 1.22236 1.13105 1.11500 1.17356 0.92848 1.27063 0.93042 1.04211 0.97905 1.70914 1.39198 1.28050 1.18343 0.82960 0.76200 0.72734 0.74561 1.19730 1.20662 1.21051 1.22855 0.97349 0.81620 0.99161 1.24739 0.90216 1.00022 0.91305 1.67754 1.09513 1.30925 1.14247 0.88632 0.91007 0.87098 0.79536 0.82384 0.90114 0.90552 0.91667 0.88921 0.92698 0.92829 0.92244 0.80662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.83 10.16 71.24 0.72 -1.11 16 2 C 0.13 3.64 6.78 42.57 0.29 3.93 16 3 C -0.17 -3.85 9.72 22.32 0.22 -3.63 16 4 C -0.02 -0.57 9.72 22.73 0.22 -0.35 16 5 C -0.21 -7.86 5.89 -19.99 -0.12 -7.98 16 6 C 0.57 23.11 7.82 86.79 0.68 23.79 16 7 O -0.58 -24.67 16.67 -3.88 -0.06 -24.73 16 8 N -0.61 -24.75 3.33 -823.76 -2.75 -27.49 16 9 C 0.11 3.79 6.93 86.86 0.60 4.40 16 10 C -0.11 -4.12 6.50 31.99 0.21 -3.91 16 11 C 0.02 0.73 2.46 -10.35 -0.03 0.70 16 12 H 0.02 0.99 8.00 -2.39 -0.02 0.98 16 13 C -0.60 -31.28 8.38 25.60 0.21 -31.07 16 14 H 0.05 2.75 7.77 -2.91 -0.02 2.73 16 15 C -0.02 -1.17 5.34 84.66 0.45 -0.72 16 16 N -0.93 -52.65 13.45 21.45 0.29 -52.36 16 17 Si 1.11 48.09 29.90 68.60 2.05 50.14 16 18 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 19 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 20 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 21 C 0.11 4.99 3.48 86.67 0.30 5.29 16 22 C 0.09 3.70 9.81 85.02 0.83 4.53 16 23 N -0.51 -18.87 10.25 -182.82 -1.87 -20.75 16 24 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 25 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 26 H 0.11 1.18 8.07 -2.39 -0.02 1.16 16 27 H 0.19 2.39 8.06 -2.91 -0.02 2.37 16 28 H 0.16 4.03 7.75 -2.91 -0.02 4.01 16 29 H 0.08 2.73 7.99 -2.39 -0.02 2.71 16 30 H 0.08 2.51 8.14 -2.38 -0.02 2.49 16 31 H 0.06 2.50 8.03 -2.39 -0.02 2.48 16 32 H 0.09 3.06 8.14 -2.39 -0.02 3.04 16 33 H 0.26 14.77 5.63 -92.71 -0.52 14.25 16 34 H 0.05 2.49 5.63 -2.39 -0.01 2.48 16 35 H 0.06 2.87 6.43 -2.39 -0.02 2.86 16 36 H 0.18 7.76 2.76 -6.52 -0.02 7.74 16 Total: -1.00 -65.62 296.63 3.58 -62.04 By element: Atomic # 1 Polarization: 17.95 SS G_CDS: 1.33 Total: 19.28 kcal Atomic # 6 Polarization: -10.72 SS G_CDS: 4.60 Total: -6.12 kcal Atomic # 7 Polarization: -96.27 SS G_CDS: -4.33 Total: -100.60 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.06 Total: -24.73 kcal Atomic # 14 Polarization: 48.09 SS G_CDS: 2.05 Total: 50.14 kcal Total: -65.62 3.58 -62.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259834658.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.936 kcal (2) G-P(sol) polarization free energy of solvation -65.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.583 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds