Wall clock time and date at job start Mon Mar 30 2020 04:12:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.88275 * 297.57642 * 9 7 2 11 11 C 1.55154 * 111.00112 * 61.45201 * 9 7 2 12 12 C 1.54330 * 102.94062 * 153.57889 * 11 9 7 13 13 N 1.47018 * 107.26788 * 337.80820 * 12 11 9 14 14 C 1.34780 * 125.64417 * 178.98890 * 13 12 11 15 15 O 1.21284 * 120.00037 * 179.97438 * 14 13 12 16 16 C 1.50697 * 120.00122 * 359.97254 * 14 13 12 17 17 C 1.50707 * 109.47129 * 180.02562 * 16 14 13 18 18 C 1.38675 * 120.41620 * 269.71918 * 17 16 14 19 19 C 1.38619 * 118.41873 * 179.78195 * 18 17 16 20 20 C 1.38234 * 119.16466 * 0.47103 * 19 18 17 21 21 N 1.31854 * 120.75670 * 359.77142 * 20 19 18 22 22 C 1.31889 * 121.72962 * 359.97438 * 21 20 19 23 23 C 1.47426 * 108.70768 * 358.93781 * 13 12 11 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09000 * 110.72424 * 271.94098 * 11 9 7 26 26 H 1.08998 * 110.72375 * 35.21938 * 11 9 7 27 27 H 1.09000 * 109.88170 * 97.22423 * 12 11 9 28 28 H 1.08998 * 109.88142 * 218.38881 * 12 11 9 29 29 H 1.09004 * 109.47318 * 299.99872 * 16 14 13 30 30 H 1.08996 * 109.47464 * 59.99822 * 16 14 13 31 31 H 1.08008 * 120.78657 * 0.02562 * 18 17 16 32 32 H 1.08003 * 120.42068 * 180.26750 * 19 18 17 33 33 H 1.07991 * 119.62125 * 179.74969 * 20 19 18 34 34 H 1.07998 * 119.61446 * 180.02562 * 22 21 20 35 35 H 1.09000 * 110.36680 * 265.29586 * 23 13 12 36 36 H 1.09002 * 110.36562 * 142.96806 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6482 -2.5998 0.9031 11 6 0.3741 -2.6349 -1.2721 12 6 0.2590 -4.1635 -1.4511 13 7 1.3946 -4.7725 -0.7433 14 6 1.6421 -6.0938 -0.6459 15 8 2.6138 -6.4853 -0.0346 16 6 0.7116 -7.0847 -1.2964 17 6 1.2090 -8.4841 -1.0400 18 6 2.0865 -9.0906 -1.9261 19 6 2.5212 -10.3771 -1.6474 20 6 2.0611 -11.0117 -0.5088 21 7 1.2229 -10.4058 0.3089 22 6 0.7923 -9.1807 0.0781 23 6 2.2183 -3.6986 -0.1588 24 1 -0.4850 -0.8401 -0.0004 25 1 -0.6082 -2.1903 -1.1129 26 1 0.8688 -2.1823 -2.1315 27 1 -0.6783 -4.5174 -1.0218 28 1 0.3031 -4.4171 -2.5102 29 1 -0.2887 -6.9727 -0.8780 30 1 0.6788 -6.9015 -2.3703 31 1 2.4262 -8.5715 -2.8102 32 1 3.2081 -10.8785 -2.3132 33 1 2.3918 -12.0155 -0.2867 34 1 0.1061 -8.7168 0.7711 35 1 3.0364 -3.4396 -0.8309 36 1 2.6066 -4.0045 0.8127 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259921405.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:56 Heat of formation + Delta-G solvation = -8.542737 kcal Electronic energy + Delta-G solvation = -18731.442005 eV Core-core repulsion = 15794.020982 eV Total energy + Delta-G solvation = -2937.421023 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.44387 -39.32774 -37.01864 -33.64769 -33.35609 -32.00508 -30.32754 -28.77111 -27.73123 -24.50690 -23.65804 -23.04549 -21.98799 -20.04220 -18.86252 -17.29002 -17.16087 -16.67709 -16.43324 -15.73271 -15.27273 -14.69573 -14.19005 -13.84458 -13.69510 -13.39306 -13.14921 -12.99122 -12.63593 -12.25415 -12.04346 -12.00127 -11.59966 -11.41268 -11.03405 -10.76267 -10.18692 -9.99270 -9.93389 -9.76699 -9.62238 -9.53177 -9.01585 -8.66443 -8.47069 -8.17931 -6.45150 -4.19751 1.00664 1.20497 2.88237 3.34372 3.40055 3.41427 3.57493 3.80051 4.32026 4.44924 4.59709 4.67617 4.85877 4.88146 4.91143 5.21197 5.25093 5.32866 5.40262 5.53952 5.61333 5.67134 5.76363 5.98704 6.01286 6.13729 6.15972 6.43344 6.57638 6.60076 6.72497 6.81532 7.00938 7.42438 7.88127 7.94675 8.04925 8.31576 8.46067 8.75260 9.52068 10.92328 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.055822 B = 0.003730 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.473711 B = 7504.111622 C = 7633.123084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.024 3.976 3 Si 1.071 2.929 4 H -0.287 1.287 5 H -0.288 1.288 6 H -0.284 1.284 7 C -0.595 4.595 8 H 0.054 0.946 9 C 0.029 3.971 10 H 0.031 0.969 11 C -0.126 4.126 12 C 0.096 3.904 13 N -0.613 5.613 14 C 0.522 3.478 15 O -0.547 6.547 16 C -0.096 4.096 17 C -0.110 4.110 18 C -0.063 4.063 19 C -0.172 4.172 20 C 0.091 3.909 21 N -0.485 5.485 22 C 0.112 3.888 23 C 0.116 3.884 24 H 0.272 0.728 25 H 0.074 0.926 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.057 0.943 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.153 0.847 34 H 0.153 0.847 35 H 0.061 0.939 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.417 -15.703 -6.162 16.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.181 4.181 3 Si 0.899 3.101 4 H -0.214 1.214 5 H -0.214 1.214 6 H -0.210 1.210 7 C -0.634 4.634 8 H 0.072 0.928 9 C 0.010 3.990 10 H 0.049 0.951 11 C -0.165 4.165 12 C -0.027 4.027 13 N -0.346 5.346 14 C 0.310 3.690 15 O -0.426 6.426 16 C -0.136 4.136 17 C -0.112 4.112 18 C -0.089 4.089 19 C -0.192 4.192 20 C -0.065 4.065 21 N -0.193 5.193 22 C -0.044 4.044 23 C -0.005 4.005 24 H 0.084 0.916 25 H 0.092 0.908 26 H 0.087 0.913 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.150 0.850 32 H 0.151 0.849 33 H 0.171 0.829 34 H 0.170 0.830 35 H 0.080 0.920 36 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -0.378 -14.787 -5.086 15.642 hybrid contribution 0.477 -1.153 -0.863 1.517 sum 0.099 -15.940 -5.949 17.015 Atomic orbital electron populations 1.70810 1.06853 1.31020 1.45983 1.25801 0.96488 1.02558 0.93272 0.83505 0.74699 0.74991 0.76888 1.21384 1.21421 1.20971 1.21825 0.94284 0.90754 1.56503 0.92806 1.20014 0.92964 0.92954 0.93117 0.95132 1.22888 1.01857 0.90213 1.01548 1.22213 0.88394 0.96698 0.95349 1.48760 1.27681 1.05037 1.53115 1.20008 0.86177 0.81725 0.81080 1.90700 1.30061 1.78489 1.43310 1.20596 0.99921 0.90170 1.02936 1.20357 0.98658 0.95693 0.96519 1.21445 0.94156 0.94529 0.98773 1.22088 1.01733 0.95978 0.99411 1.22730 0.93378 0.99786 0.90654 1.67676 1.11139 1.10298 1.30208 1.22599 0.97302 0.90148 0.94400 1.22462 0.94573 0.86151 0.97324 0.91576 0.90766 0.91287 0.92295 0.92483 0.87762 0.87961 0.85035 0.84854 0.82929 0.83002 0.92023 0.91940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.62 13.43 55.43 0.74 -24.87 16 2 C 0.02 0.64 5.34 -17.82 -0.10 0.54 16 3 Si 1.07 24.08 29.90 -169.99 -5.08 19.00 16 4 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.60 -15.78 8.55 -34.44 -0.29 -16.08 16 8 H 0.05 1.44 7.79 -52.48 -0.41 1.03 16 9 C 0.03 0.67 2.58 -89.62 -0.23 0.44 16 10 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 11 C -0.13 -2.57 5.58 -24.89 -0.14 -2.71 16 12 C 0.10 1.55 6.49 -3.06 -0.02 1.53 16 13 N -0.61 -11.15 3.33 -170.52 -0.57 -11.72 16 14 C 0.52 9.01 7.84 -10.99 -0.09 8.93 16 15 O -0.55 -11.52 16.29 5.55 0.09 -11.43 16 16 C -0.10 -1.16 5.05 -29.03 -0.15 -1.31 16 17 C -0.11 -1.41 4.39 -104.48 -0.46 -1.87 16 18 C -0.06 -0.73 9.86 -39.28 -0.39 -1.12 16 19 C -0.17 -1.78 10.11 -39.44 -0.40 -2.18 16 20 C 0.09 1.03 11.18 -17.54 -0.20 0.83 16 21 N -0.49 -6.64 10.36 -13.25 -0.14 -6.78 16 22 C 0.11 1.50 10.86 -17.55 -0.19 1.31 16 23 C 0.12 2.48 6.35 -2.53 -0.02 2.46 16 24 H 0.27 7.44 5.32 -40.82 -0.22 7.22 16 25 H 0.07 1.55 6.46 -51.93 -0.34 1.21 16 26 H 0.07 1.47 8.03 -51.93 -0.42 1.05 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 28 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 29 H 0.10 1.06 8.09 -51.93 -0.42 0.64 16 30 H 0.10 1.02 8.09 -51.93 -0.42 0.60 16 31 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 32 H 0.13 0.97 8.06 -52.48 -0.42 0.55 16 33 H 0.15 1.24 8.06 -52.49 -0.42 0.82 16 34 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.06 1.35 8.03 -51.93 -0.42 0.93 16 36 H 0.06 1.39 8.04 -51.93 -0.42 0.97 16 LS Contribution 305.28 15.07 4.60 4.60 Total: -1.00 -31.92 305.28 -7.82 -39.74 By element: Atomic # 1 Polarization: 5.47 SS G_CDS: -4.81 Total: 0.67 kcal Atomic # 6 Polarization: -6.56 SS G_CDS: -2.66 Total: -9.22 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: 0.04 Total: -43.37 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.09 Total: -11.43 kcal Atomic # 14 Polarization: 24.08 SS G_CDS: -5.08 Total: 19.00 kcal Total LS contribution 4.60 Total: 4.60 kcal Total: -31.92 -7.82 -39.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921405.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.201 kcal (2) G-P(sol) polarization free energy of solvation -31.924 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds