Wall clock time and date at job start Mon Mar 30 2020 04:12:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47483 * 89.99568 * 3 2 1 5 5 H 1.48499 * 109.47134 * 210.00082 * 3 2 1 6 6 H 1.48507 * 109.46904 * 329.99905 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.88275 * 297.57642 * 9 7 2 11 11 C 1.55154 * 111.00112 * 61.45201 * 9 7 2 12 12 C 1.54330 * 102.94062 * 153.57889 * 11 9 7 13 13 N 1.47018 * 107.26788 * 337.80820 * 12 11 9 14 14 C 1.34780 * 125.64417 * 178.98890 * 13 12 11 15 15 O 1.21284 * 120.00037 * 179.97438 * 14 13 12 16 16 C 1.50697 * 120.00122 * 359.97254 * 14 13 12 17 17 C 1.50707 * 109.47129 * 180.02562 * 16 14 13 18 18 C 1.38675 * 120.41620 * 269.71918 * 17 16 14 19 19 C 1.38619 * 118.41873 * 179.78195 * 18 17 16 20 20 C 1.38234 * 119.16466 * 0.47103 * 19 18 17 21 21 N 1.31854 * 120.75670 * 359.77142 * 20 19 18 22 22 C 1.31889 * 121.72962 * 359.97438 * 21 20 19 23 23 C 1.47426 * 108.70768 * 358.93781 * 13 12 11 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09000 * 110.72424 * 271.94098 * 11 9 7 26 26 H 1.08998 * 110.72375 * 35.21938 * 11 9 7 27 27 H 1.09000 * 109.88170 * 97.22423 * 12 11 9 28 28 H 1.08998 * 109.88142 * 218.38881 * 12 11 9 29 29 H 1.09004 * 109.47318 * 299.99872 * 16 14 13 30 30 H 1.08996 * 109.47464 * 59.99822 * 16 14 13 31 31 H 1.08008 * 120.78657 * 0.02562 * 18 17 16 32 32 H 1.08003 * 120.42068 * 180.26750 * 19 18 17 33 33 H 1.07991 * 119.62125 * 179.74969 * 20 19 18 34 34 H 1.07998 * 119.61446 * 180.02562 * 22 21 20 35 35 H 1.09000 * 110.36680 * 265.29586 * 23 13 12 36 36 H 1.09002 * 110.36562 * 142.96806 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0465 1.4001 5 1 3.5467 1.4402 -0.7000 6 1 1.4466 2.6527 -0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6482 -2.5998 0.9031 11 6 0.3741 -2.6349 -1.2721 12 6 0.2590 -4.1635 -1.4511 13 7 1.3946 -4.7725 -0.7433 14 6 1.6421 -6.0938 -0.6459 15 8 2.6138 -6.4853 -0.0346 16 6 0.7116 -7.0847 -1.2964 17 6 1.2090 -8.4841 -1.0400 18 6 2.0865 -9.0906 -1.9261 19 6 2.5212 -10.3771 -1.6474 20 6 2.0611 -11.0117 -0.5088 21 7 1.2229 -10.4058 0.3089 22 6 0.7923 -9.1807 0.0781 23 6 2.2183 -3.6986 -0.1588 24 1 -0.4850 -0.8401 -0.0004 25 1 -0.6082 -2.1903 -1.1129 26 1 0.8688 -2.1823 -2.1315 27 1 -0.6783 -4.5174 -1.0218 28 1 0.3031 -4.4171 -2.5102 29 1 -0.2887 -6.9727 -0.8780 30 1 0.6788 -6.9015 -2.3703 31 1 2.4262 -8.5715 -2.8102 32 1 3.2081 -10.8785 -2.3132 33 1 2.3918 -12.0155 -0.2867 34 1 0.1061 -8.7168 0.7711 35 1 3.0364 -3.4396 -0.8309 36 1 2.6066 -4.0045 0.8127 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259921405.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:12:55 Heat of formation + Delta-G solvation = -28.272147 kcal Electronic energy + Delta-G solvation = -18732.297536 eV Core-core repulsion = 15794.020982 eV Total energy + Delta-G solvation = -2938.276554 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.49330 -40.60462 -38.58618 -35.30029 -34.57083 -32.88157 -31.97356 -30.29418 -28.91371 -26.36633 -24.53058 -24.46067 -23.08209 -21.81721 -20.22662 -19.09471 -18.08303 -18.00845 -17.51706 -17.13966 -16.48043 -15.78064 -15.69372 -15.61558 -14.71641 -14.48691 -14.32349 -14.28645 -13.97312 -13.76913 -13.67894 -13.35413 -13.03623 -12.76953 -12.51799 -12.43630 -11.92819 -11.74189 -11.56436 -11.12403 -10.72229 -10.62850 -10.50128 -10.43074 -9.92985 -9.66607 -8.58682 -6.33895 0.13030 0.34294 1.55861 1.56788 1.62997 1.81311 2.01738 2.57842 2.86517 3.19103 3.46613 3.61871 3.74050 3.87954 3.89540 4.06512 4.08826 4.18503 4.22326 4.36605 4.46313 4.51262 4.60754 4.65829 4.74211 4.84962 4.89300 5.09528 5.16382 5.20073 5.29354 5.29456 5.55826 5.77268 6.04336 6.19249 6.55505 6.66459 7.00689 7.08971 7.44403 8.80568 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.055822 B = 0.003730 C = 0.003667 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.473711 B = 7504.111622 C = 7633.123084 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C -0.020 4.020 3 Si 1.113 2.887 4 H -0.279 1.279 5 H -0.275 1.275 6 H -0.281 1.281 7 C -0.612 4.612 8 H 0.043 0.957 9 C 0.019 3.981 10 H 0.006 0.994 11 C -0.118 4.118 12 C 0.105 3.895 13 N -0.616 5.616 14 C 0.520 3.480 15 O -0.591 6.591 16 C -0.082 4.082 17 C -0.126 4.126 18 C -0.073 4.073 19 C -0.169 4.169 20 C 0.081 3.919 21 N -0.514 5.514 22 C 0.091 3.909 23 C 0.127 3.873 24 H 0.267 0.733 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.087 0.913 28 H 0.096 0.904 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.151 0.849 32 H 0.166 0.834 33 H 0.180 0.820 34 H 0.156 0.844 35 H 0.052 0.948 36 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.575 -16.859 -7.919 18.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.220 4.220 3 Si 0.936 3.064 4 H -0.205 1.205 5 H -0.200 1.200 6 H -0.206 1.206 7 C -0.650 4.650 8 H 0.062 0.938 9 C 0.000 4.000 10 H 0.024 0.976 11 C -0.157 4.157 12 C -0.017 4.017 13 N -0.349 5.349 14 C 0.311 3.689 15 O -0.472 6.472 16 C -0.122 4.122 17 C -0.128 4.128 18 C -0.099 4.099 19 C -0.188 4.188 20 C -0.076 4.076 21 N -0.223 5.223 22 C -0.065 4.065 23 C 0.004 3.996 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.147 0.853 30 H 0.153 0.847 31 H 0.169 0.831 32 H 0.184 0.816 33 H 0.197 0.803 34 H 0.173 0.827 35 H 0.071 0.929 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -0.559 -15.966 -6.856 17.385 hybrid contribution 0.580 -0.874 -0.279 1.086 sum 0.022 -16.840 -7.135 18.289 Atomic orbital electron populations 1.70894 1.07538 1.30914 1.47626 1.27040 0.96663 1.05732 0.92550 0.82954 0.74229 0.71770 0.77452 1.20486 1.19971 1.20641 1.22150 0.94126 0.92492 1.56242 0.93832 1.19935 0.93624 0.92722 0.93725 0.97639 1.22654 1.00252 0.93771 0.98985 1.22267 0.88670 0.93070 0.97658 1.48800 1.27764 1.05034 1.53289 1.20947 0.86203 0.81579 0.80172 1.90681 1.32285 1.79022 1.45241 1.20613 0.99281 0.87941 1.04334 1.20477 0.99492 0.96013 0.96824 1.21826 0.93670 0.95198 0.99241 1.22471 1.01411 0.95626 0.99331 1.23284 0.92691 1.00925 0.90660 1.67669 1.12392 1.10806 1.31464 1.22792 0.98080 0.90563 0.95076 1.22062 0.94333 0.86734 0.96501 0.92120 0.91616 0.92548 0.89439 0.88619 0.85309 0.84740 0.83146 0.81635 0.80312 0.82679 0.92921 0.93842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.03 13.43 21.45 0.29 -52.74 16 2 C -0.02 -1.09 5.34 84.65 0.45 -0.64 16 3 Si 1.11 48.49 29.90 68.60 2.05 50.54 16 4 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 5 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 6 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 7 C -0.61 -33.15 8.55 25.60 0.22 -32.93 16 8 H 0.04 2.38 7.79 -2.91 -0.02 2.36 16 9 C 0.02 0.92 2.58 -10.15 -0.03 0.89 16 10 H 0.01 0.29 8.10 -2.39 -0.02 0.27 16 11 C -0.12 -4.73 5.58 31.78 0.18 -4.55 16 12 C 0.11 3.08 6.49 86.73 0.56 3.64 16 13 N -0.62 -21.53 3.33 -811.79 -2.70 -24.24 16 14 C 0.52 17.08 7.84 87.66 0.69 17.77 16 15 O -0.59 -24.73 16.29 -3.04 -0.05 -24.78 16 16 C -0.08 -1.73 5.05 29.10 0.15 -1.58 16 17 C -0.13 -2.95 4.39 -19.77 -0.09 -3.04 16 18 C -0.07 -1.50 9.86 22.47 0.22 -1.28 16 19 C -0.17 -3.03 10.11 22.36 0.23 -2.80 16 20 C 0.08 1.67 11.18 84.69 0.95 2.61 16 21 N -0.51 -13.62 10.36 -195.85 -2.03 -15.65 16 22 C 0.09 2.35 10.86 84.67 0.92 3.27 16 23 C 0.13 5.49 6.35 86.85 0.55 6.04 16 24 H 0.27 14.89 5.32 -92.71 -0.49 14.40 16 25 H 0.07 2.73 6.46 -2.39 -0.02 2.72 16 26 H 0.06 2.37 8.03 -2.39 -0.02 2.35 16 27 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 28 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.13 2.11 8.09 -2.39 -0.02 2.09 16 30 H 0.13 2.00 8.09 -2.39 -0.02 1.98 16 31 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 32 H 0.17 1.79 8.06 -2.91 -0.02 1.76 16 33 H 0.18 2.48 8.06 -2.91 -0.02 2.46 16 34 H 0.16 3.60 8.06 -2.91 -0.02 3.58 16 35 H 0.05 2.35 8.03 -2.39 -0.02 2.33 16 36 H 0.04 2.01 8.04 -2.39 -0.02 1.99 16 Total: -1.00 -71.31 305.28 3.90 -67.41 By element: Atomic # 1 Polarization: 10.72 SS G_CDS: 1.34 Total: 12.06 kcal Atomic # 6 Polarization: -17.60 SS G_CDS: 5.00 Total: -12.60 kcal Atomic # 7 Polarization: -88.19 SS G_CDS: -4.44 Total: -92.63 kcal Atomic # 8 Polarization: -24.73 SS G_CDS: -0.05 Total: -24.78 kcal Atomic # 14 Polarization: 48.49 SS G_CDS: 2.05 Total: 50.54 kcal Total: -71.31 3.90 -67.41 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259921405.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.142 kcal (2) G-P(sol) polarization free energy of solvation -71.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds