Wall clock time and date at job start Mon Mar 30 2020 04:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31692 * 119.71191 * 2 1 4 4 C 1.31937 * 121.87862 * 179.97438 * 3 2 1 5 5 C 1.38359 * 121.07527 * 0.02562 * 4 3 2 6 6 C 1.38356 * 119.30143 * 359.70382 * 5 4 3 7 7 C 1.39514 * 119.71835 * 179.97438 * 2 1 3 8 8 C 1.47843 * 120.55764 * 0.02562 * 7 2 1 9 9 O 1.21552 * 119.99984 * 322.79593 * 8 7 2 10 10 N 1.34775 * 119.99878 * 142.79707 * 8 7 2 11 11 C 1.47426 * 125.64844 * 354.91102 * 10 8 7 12 12 C 1.55126 * 104.94336 * 203.96864 * 11 10 8 13 13 C 1.55158 * 101.48408 * 323.22191 * 12 11 10 14 14 H 1.08997 * 110.72259 * 276.83111 * 13 12 11 15 15 C 1.50699 * 110.71886 * 153.73414 * 13 12 11 16 16 H 1.07999 * 120.00219 * 2.43889 * 15 13 12 17 17 C 1.37881 * 120.00275 * 182.44300 * 15 13 12 18 18 N 1.31519 * 119.99571 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00240 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47264 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.46984 * 59.99931 * 19 17 15 22 22 H 1.48503 * 109.47143 * 299.99825 * 19 17 15 23 23 C 1.47029 * 125.64855 * 174.87118 * 10 8 7 24 24 H 1.09001 * 109.47183 * 264.47345 * 1 2 3 25 25 H 1.09008 * 109.46925 * 24.47238 * 1 2 3 26 26 H 1.09005 * 109.47033 * 144.46971 * 1 2 3 27 27 H 1.07997 * 119.46122 * 180.02562 * 4 3 2 28 28 H 1.07988 * 120.34370 * 179.97438 * 5 4 3 29 29 H 1.08001 * 120.85120 * 180.29804 * 6 5 4 30 30 H 1.08993 * 110.37116 * 322.93247 * 11 10 8 31 31 H 1.09009 * 110.36272 * 85.15080 * 11 10 8 32 32 H 1.09002 * 111.16542 * 205.13609 * 12 11 10 33 33 H 1.08994 * 110.93597 * 81.21097 * 12 11 10 34 34 H 0.96997 * 120.00013 * 0.02562 * 18 17 15 35 35 H 1.09003 * 109.88005 * 59.55845 * 23 10 8 36 36 H 1.08998 * 109.88040 * 298.39851 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1597 1.1438 0.0000 4 6 3.4782 1.1937 0.0005 5 6 4.2366 0.0365 0.0005 6 6 3.5987 -1.1912 0.0062 7 6 2.1987 -1.2116 0.0005 8 6 1.4656 -2.4955 0.0005 9 8 0.4359 -2.6075 0.6367 10 7 1.9391 -3.5418 -0.7048 11 6 3.1104 -3.5153 -1.5996 12 6 2.8798 -4.6824 -2.5951 13 6 2.2253 -5.7475 -1.6761 14 1 2.9859 -6.3067 -1.1312 15 6 1.3529 -6.6793 -2.4772 16 1 1.2883 -6.5701 -3.5497 17 6 0.6372 -7.6713 -1.8410 18 7 0.7155 -7.8040 -0.5348 19 14 -0.4447 -8.8259 -2.8339 20 1 -1.1029 -9.7949 -1.9213 21 1 0.3889 -9.5605 -3.8191 22 1 -1.4807 -8.0395 -3.5507 23 6 1.3736 -4.8990 -0.7086 24 1 -0.3633 -0.0990 1.0229 25 1 -0.3633 0.9354 -0.4257 26 1 -0.3633 -0.8364 -0.5972 27 1 3.9734 2.1534 0.0009 28 1 5.3151 0.0911 0.0005 29 1 4.1661 -2.1102 0.0112 30 1 3.1597 -2.5655 -2.1320 31 1 4.0260 -3.6786 -1.0310 32 1 3.8238 -5.0448 -3.0022 33 1 2.2003 -4.3848 -3.3936 34 1 1.2764 -7.2037 -0.0192 35 1 0.3400 -4.8689 -1.0535 36 1 1.4195 -5.3225 0.2947 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259940452.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:48 Heat of formation + Delta-G solvation = -5.674960 kcal Electronic energy + Delta-G solvation = -19331.753665 eV Core-core repulsion = 16394.456998 eV Total energy + Delta-G solvation = -2937.296667 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.71771 -38.98682 -36.96602 -33.65317 -32.93716 -32.38012 -30.51574 -28.20381 -27.62248 -25.33454 -24.12166 -22.36021 -22.24707 -20.22619 -19.26697 -17.38766 -16.84212 -16.60223 -16.19949 -15.70345 -15.14780 -14.46662 -13.96134 -13.77778 -13.57888 -13.52334 -12.95782 -12.56930 -12.50445 -12.40124 -12.10893 -11.95445 -11.86157 -11.37529 -10.89041 -10.79925 -10.20424 -10.12544 -10.01614 -9.88856 -9.68829 -9.39310 -9.04123 -8.69013 -8.49778 -8.10080 -6.45512 -4.20851 0.70186 1.08793 2.98441 3.34110 3.40856 3.42548 3.60487 3.73622 4.17988 4.46028 4.57435 4.65534 4.71174 4.92494 5.20490 5.24666 5.31297 5.43760 5.49036 5.61108 5.67269 5.76492 5.91188 5.94837 6.04630 6.14700 6.17242 6.46141 6.52316 6.62287 6.64565 6.74375 7.05085 7.37231 7.79453 7.96664 8.04148 8.30648 8.47132 8.74395 9.51248 10.91953 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.035962 B = 0.005003 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.413118 B = 5595.253480 C = 5994.945791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.179 3.821 3 N -0.490 5.490 4 C 0.116 3.884 5 C -0.188 4.188 6 C -0.043 4.043 7 C -0.173 4.173 8 C 0.566 3.434 9 O -0.535 6.535 10 N -0.605 5.605 11 C 0.096 3.904 12 C -0.120 4.120 13 C 0.028 3.972 14 H 0.033 0.967 15 C -0.597 4.597 16 H 0.055 0.945 17 C 0.022 3.978 18 N -0.904 5.904 19 Si 1.069 2.931 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.287 1.287 23 C 0.112 3.888 24 H 0.087 0.913 25 H 0.073 0.927 26 H 0.081 0.919 27 H 0.158 0.842 28 H 0.139 0.861 29 H 0.142 0.858 30 H 0.064 0.936 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.069 0.931 34 H 0.271 0.729 35 H 0.069 0.931 36 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.616 14.171 -0.884 16.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.041 3.959 3 N -0.200 5.200 4 C -0.041 4.041 5 C -0.208 4.208 6 C -0.069 4.069 7 C -0.178 4.178 8 C 0.353 3.647 9 O -0.413 6.413 10 N -0.337 5.337 11 C -0.027 4.027 12 C -0.158 4.158 13 C 0.009 3.991 14 H 0.051 0.949 15 C -0.635 4.635 16 H 0.073 0.927 17 C -0.184 4.184 18 N -0.540 5.540 19 Si 0.897 3.103 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.213 1.213 23 C -0.009 4.009 24 H 0.106 0.894 25 H 0.092 0.908 26 H 0.100 0.900 27 H 0.176 0.824 28 H 0.157 0.843 29 H 0.160 0.840 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.088 0.912 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.087 0.913 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 5.517 13.626 -0.363 14.705 hybrid contribution 1.827 0.561 -0.081 1.913 sum 7.344 14.186 -0.444 15.981 Atomic orbital electron populations 1.20795 0.87805 1.03161 1.04171 1.21438 0.97436 0.86617 0.90400 1.67614 1.09991 1.28605 1.13762 1.22916 0.89468 0.98623 0.93080 1.22058 1.01635 0.93050 1.04066 1.21953 0.93225 0.99189 0.92573 1.20920 0.94643 0.95228 1.07001 1.17695 0.84538 0.82460 0.80003 1.90775 1.23511 1.83220 1.43813 1.48743 1.30130 1.11210 1.43634 1.22525 0.88187 0.99952 0.92075 1.22808 1.00739 0.94842 0.97437 1.19910 0.94538 0.92102 0.92551 0.94920 1.21863 1.30358 1.16565 0.94734 0.92708 1.25893 0.97599 0.97869 0.97003 1.70837 1.37829 1.39274 1.06018 0.83531 0.75980 0.75970 0.74838 1.20682 1.21350 1.21338 1.22791 0.99440 0.78236 1.00437 0.89407 0.90833 0.89982 0.82431 0.84283 0.84033 0.91766 0.92105 0.91176 0.91241 0.91762 0.91307 0.92785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 8.83 36.01 0.32 -1.16 16 2 C 0.18 2.74 6.82 -82.18 -0.56 2.18 16 3 N -0.49 -6.80 10.26 -9.14 -0.09 -6.89 16 4 C 0.12 1.26 11.17 -17.46 -0.20 1.06 16 5 C -0.19 -1.90 10.10 -39.49 -0.40 -2.30 16 6 C -0.04 -0.55 8.33 -38.87 -0.32 -0.87 16 7 C -0.17 -2.74 5.39 -104.82 -0.57 -3.30 16 8 C 0.57 10.99 6.92 -12.33 -0.09 10.90 16 9 O -0.53 -12.00 15.30 5.32 0.08 -11.92 16 10 N -0.60 -11.84 3.33 -171.49 -0.57 -12.41 16 11 C 0.10 1.53 5.26 -2.41 -0.01 1.52 16 12 C -0.12 -2.22 6.52 -24.46 -0.16 -2.38 16 13 C 0.03 0.65 2.47 -89.94 -0.22 0.43 16 14 H 0.03 0.80 8.01 -51.93 -0.42 0.38 16 15 C -0.60 -15.79 8.38 -34.44 -0.29 -16.08 16 16 H 0.05 1.43 7.77 -52.49 -0.41 1.03 16 17 C 0.02 0.60 5.34 -17.82 -0.10 0.50 16 18 N -0.90 -26.35 13.45 55.43 0.75 -25.60 16 19 Si 1.07 24.36 29.90 -169.99 -5.08 19.27 16 20 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 21 H -0.29 -6.21 7.11 56.52 0.40 -5.81 16 22 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 23 C 0.11 2.62 5.46 -3.06 -0.02 2.60 16 24 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 25 H 0.07 0.91 8.14 -51.92 -0.42 0.49 16 26 H 0.08 1.31 6.77 -51.93 -0.35 0.96 16 27 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 28 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 29 H 0.14 1.62 5.95 -52.49 -0.31 1.31 16 30 H 0.06 0.91 7.30 -51.93 -0.38 0.53 16 31 H 0.06 0.85 6.97 -51.92 -0.36 0.48 16 32 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.07 1.32 8.03 -51.93 -0.42 0.91 16 34 H 0.27 7.80 5.63 -40.82 -0.23 7.57 16 35 H 0.07 1.80 7.81 -51.93 -0.41 1.40 16 36 H 0.05 1.34 7.01 -51.93 -0.36 0.98 16 LS Contribution 296.33 15.07 4.47 4.47 Total: -1.00 -31.35 296.33 -7.61 -38.96 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -4.55 Total: 1.03 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: -2.60 Total: -6.90 kcal Atomic # 7 Polarization: -44.99 SS G_CDS: 0.08 Total: -44.91 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.08 Total: -11.92 kcal Atomic # 14 Polarization: 24.36 SS G_CDS: -5.08 Total: 19.27 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.35 -7.61 -38.96 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259940452.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.288 kcal (2) G-P(sol) polarization free energy of solvation -31.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds