Wall clock time and date at job start Mon Mar 30 2020 04:23:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31692 * 119.71191 * 2 1 4 4 C 1.31937 * 121.87862 * 179.97438 * 3 2 1 5 5 C 1.38359 * 121.07527 * 0.02562 * 4 3 2 6 6 C 1.38356 * 119.30143 * 359.70382 * 5 4 3 7 7 C 1.39514 * 119.71835 * 179.97438 * 2 1 3 8 8 C 1.47843 * 120.55764 * 0.02562 * 7 2 1 9 9 O 1.21552 * 119.99984 * 322.79593 * 8 7 2 10 10 N 1.34775 * 119.99878 * 142.79707 * 8 7 2 11 11 C 1.47426 * 125.64844 * 354.91102 * 10 8 7 12 12 C 1.55126 * 104.94336 * 203.96864 * 11 10 8 13 13 C 1.55158 * 101.48408 * 323.22191 * 12 11 10 14 14 H 1.08997 * 110.72259 * 276.83111 * 13 12 11 15 15 C 1.50699 * 110.71886 * 153.73414 * 13 12 11 16 16 H 1.07999 * 120.00219 * 2.43889 * 15 13 12 17 17 C 1.37881 * 120.00275 * 182.44300 * 15 13 12 18 18 N 1.31519 * 119.99571 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00240 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47264 * 180.02562 * 19 17 15 21 21 H 1.48497 * 109.46984 * 59.99931 * 19 17 15 22 22 H 1.48503 * 109.47143 * 299.99825 * 19 17 15 23 23 C 1.47029 * 125.64855 * 174.87118 * 10 8 7 24 24 H 1.09001 * 109.47183 * 264.47345 * 1 2 3 25 25 H 1.09008 * 109.46925 * 24.47238 * 1 2 3 26 26 H 1.09005 * 109.47033 * 144.46971 * 1 2 3 27 27 H 1.07997 * 119.46122 * 180.02562 * 4 3 2 28 28 H 1.07988 * 120.34370 * 179.97438 * 5 4 3 29 29 H 1.08001 * 120.85120 * 180.29804 * 6 5 4 30 30 H 1.08993 * 110.37116 * 322.93247 * 11 10 8 31 31 H 1.09009 * 110.36272 * 85.15080 * 11 10 8 32 32 H 1.09002 * 111.16542 * 205.13609 * 12 11 10 33 33 H 1.08994 * 110.93597 * 81.21097 * 12 11 10 34 34 H 0.96997 * 120.00013 * 0.02562 * 18 17 15 35 35 H 1.09003 * 109.88005 * 59.55845 * 23 10 8 36 36 H 1.08998 * 109.88040 * 298.39851 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1597 1.1438 0.0000 4 6 3.4782 1.1937 0.0005 5 6 4.2366 0.0365 0.0005 6 6 3.5987 -1.1912 0.0062 7 6 2.1987 -1.2116 0.0005 8 6 1.4656 -2.4955 0.0005 9 8 0.4359 -2.6075 0.6367 10 7 1.9391 -3.5418 -0.7048 11 6 3.1104 -3.5153 -1.5996 12 6 2.8798 -4.6824 -2.5951 13 6 2.2253 -5.7475 -1.6761 14 1 2.9859 -6.3067 -1.1312 15 6 1.3529 -6.6793 -2.4772 16 1 1.2883 -6.5701 -3.5497 17 6 0.6372 -7.6713 -1.8410 18 7 0.7155 -7.8040 -0.5348 19 14 -0.4447 -8.8259 -2.8339 20 1 -1.1029 -9.7949 -1.9213 21 1 0.3889 -9.5605 -3.8191 22 1 -1.4807 -8.0395 -3.5507 23 6 1.3736 -4.8990 -0.7086 24 1 -0.3633 -0.0990 1.0229 25 1 -0.3633 0.9354 -0.4257 26 1 -0.3633 -0.8364 -0.5972 27 1 3.9734 2.1534 0.0009 28 1 5.3151 0.0911 0.0005 29 1 4.1661 -2.1102 0.0112 30 1 3.1597 -2.5655 -2.1320 31 1 4.0260 -3.6786 -1.0310 32 1 3.8238 -5.0448 -3.0022 33 1 2.2003 -4.3848 -3.3936 34 1 1.2764 -7.2037 -0.0192 35 1 0.3400 -4.8689 -1.0535 36 1 1.4195 -5.3225 0.2947 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259940452.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:23:48 Heat of formation + Delta-G solvation = -25.996214 kcal Electronic energy + Delta-G solvation = -19332.634860 eV Core-core repulsion = 16394.456998 eV Total energy + Delta-G solvation = -2938.177862 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.91062 -40.36411 -38.59911 -35.41830 -34.06577 -33.59628 -32.13501 -29.78462 -28.83975 -27.01772 -25.57819 -23.80208 -23.32203 -21.88901 -20.75595 -19.16098 -18.26792 -17.77579 -17.36873 -17.16598 -16.59448 -15.71902 -15.62533 -15.20200 -15.04705 -14.80409 -14.27406 -14.13114 -13.89503 -13.76369 -13.51236 -13.26367 -13.11289 -13.05117 -12.63647 -12.47301 -11.97225 -11.88379 -11.50638 -11.28977 -10.94312 -10.67867 -10.60696 -10.50602 -10.06865 -9.71750 -8.63387 -6.38975 -0.33700 0.14324 1.53723 1.58343 1.60970 1.79668 1.89130 2.56731 2.70005 3.15129 3.20233 3.37308 3.64447 3.76069 3.84707 4.01709 4.09130 4.20943 4.32089 4.43614 4.50378 4.53728 4.55785 4.61934 4.66679 4.89637 4.97839 5.00527 5.04194 5.08152 5.13521 5.27808 5.49945 5.60545 6.01057 6.15579 6.45558 6.58076 6.84684 6.94814 7.41646 8.74745 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.035962 B = 0.005003 C = 0.004669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.413118 B = 5595.253480 C = 5994.945791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.163 3.837 3 N -0.506 5.506 4 C 0.122 3.878 5 C -0.167 4.167 6 C -0.044 4.044 7 C -0.197 4.197 8 C 0.562 3.438 9 O -0.580 6.580 10 N -0.609 5.609 11 C 0.101 3.899 12 C -0.112 4.112 13 C 0.019 3.981 14 H 0.020 0.980 15 C -0.605 4.605 16 H 0.056 0.944 17 C -0.030 4.030 18 N -0.936 5.936 19 Si 1.112 2.888 20 H -0.288 1.288 21 H -0.264 1.264 22 H -0.276 1.276 23 C 0.131 3.869 24 H 0.078 0.922 25 H 0.091 0.909 26 H 0.057 0.943 27 H 0.201 0.799 28 H 0.186 0.814 29 H 0.156 0.844 30 H 0.093 0.907 31 H 0.093 0.907 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.259 0.741 35 H 0.026 0.974 36 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.533 16.304 -2.182 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.026 3.974 3 N -0.216 5.216 4 C -0.035 4.035 5 C -0.186 4.186 6 C -0.070 4.070 7 C -0.202 4.202 8 C 0.352 3.648 9 O -0.461 6.461 10 N -0.341 5.341 11 C -0.020 4.020 12 C -0.150 4.150 13 C 0.000 4.000 14 H 0.038 0.962 15 C -0.643 4.643 16 H 0.074 0.926 17 C -0.229 4.229 18 N -0.573 5.573 19 Si 0.934 3.066 20 H -0.214 1.214 21 H -0.188 1.188 22 H -0.201 1.201 23 C 0.008 3.992 24 H 0.097 0.903 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.217 0.783 28 H 0.203 0.797 29 H 0.173 0.827 30 H 0.112 0.888 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.045 0.955 36 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges 8.475 15.786 -1.690 17.997 hybrid contribution 1.007 0.020 0.337 1.063 sum 9.482 15.807 -1.353 18.482 Atomic orbital electron populations 1.20689 0.88568 1.02967 1.03295 1.21392 0.97449 0.87114 0.91462 1.67665 1.11846 1.27561 1.14484 1.23736 0.88425 1.00917 0.90458 1.22526 1.03765 0.91277 1.01039 1.22184 0.91598 1.01167 0.92027 1.20624 0.96072 0.92893 1.10596 1.18390 0.84112 0.83497 0.78772 1.90736 1.25722 1.84131 1.45557 1.48762 1.31138 1.09695 1.44530 1.22733 0.87699 1.00272 0.91321 1.22759 1.01343 0.93990 0.96860 1.19871 0.94054 0.92889 0.93220 0.96238 1.22277 1.30148 1.16792 0.95127 0.92589 1.27249 0.98756 0.99729 0.97137 1.70941 1.39184 1.40053 1.07102 0.82989 0.75077 0.74491 0.74048 1.21395 1.18845 1.20119 1.22198 0.97514 0.80836 0.98645 0.90314 0.89040 0.92440 0.78260 0.79690 0.82698 0.88833 0.88948 0.88331 0.92035 0.92971 0.95518 0.95593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.94 8.83 71.24 0.63 -2.31 16 2 C 0.16 4.86 6.82 42.89 0.29 5.15 16 3 N -0.51 -12.66 10.26 -182.84 -1.88 -14.53 16 4 C 0.12 2.03 11.17 84.71 0.95 2.97 16 5 C -0.17 -2.44 10.10 22.33 0.23 -2.21 16 6 C -0.04 -0.95 8.33 22.73 0.19 -0.76 16 7 C -0.20 -6.02 5.39 -19.99 -0.11 -6.13 16 8 C 0.56 22.46 6.92 86.79 0.60 23.06 16 9 O -0.58 -27.77 15.30 -3.88 -0.06 -27.83 16 10 N -0.61 -24.19 3.33 -814.74 -2.71 -26.90 16 11 C 0.10 2.99 5.26 86.93 0.46 3.45 16 12 C -0.11 -3.95 6.52 32.06 0.21 -3.74 16 13 C 0.02 0.90 2.47 -10.35 -0.03 0.87 16 14 H 0.02 0.98 8.01 -2.39 -0.02 0.96 16 15 C -0.61 -32.64 8.38 25.60 0.21 -32.43 16 16 H 0.06 2.94 7.77 -2.91 -0.02 2.91 16 17 C -0.03 -1.67 5.34 84.65 0.45 -1.21 16 18 N -0.94 -56.83 13.45 21.45 0.29 -56.54 16 19 Si 1.11 49.61 29.90 68.60 2.05 51.66 16 20 H -0.29 -13.10 7.11 99.48 0.71 -12.39 16 21 H -0.26 -10.69 7.11 99.48 0.71 -9.98 16 22 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 23 C 0.13 6.47 5.46 86.73 0.47 6.94 16 24 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 25 H 0.09 2.29 8.14 -2.38 -0.02 2.27 16 26 H 0.06 1.97 6.77 -2.38 -0.02 1.95 16 27 H 0.20 1.60 8.06 -2.91 -0.02 1.57 16 28 H 0.19 1.07 8.06 -2.92 -0.02 1.05 16 29 H 0.16 2.88 5.95 -2.91 -0.02 2.86 16 30 H 0.09 2.29 7.30 -2.39 -0.02 2.27 16 31 H 0.09 2.21 6.97 -2.38 -0.02 2.19 16 32 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.06 2.27 8.03 -2.39 -0.02 2.25 16 34 H 0.26 15.85 5.63 -92.71 -0.52 15.33 16 35 H 0.03 1.50 7.81 -2.39 -0.02 1.48 16 36 H 0.03 1.39 7.01 -2.39 -0.02 1.37 16 Total: -1.00 -73.62 296.33 3.58 -70.04 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: 1.33 Total: 10.45 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 4.56 Total: -6.35 kcal Atomic # 7 Polarization: -93.67 SS G_CDS: -4.30 Total: -97.97 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.06 Total: -27.83 kcal Atomic # 14 Polarization: 49.61 SS G_CDS: 2.05 Total: 51.66 kcal Total: -73.62 3.58 -70.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259940452.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.043 kcal (2) G-P(sol) polarization free energy of solvation -73.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds