Wall clock time and date at job start Mon Mar 30 2020 04:15:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.88275 * 297.57642 * 9 7 2 11 11 C 1.55154 * 111.00112 * 61.45201 * 9 7 2 12 12 C 1.54330 * 102.94062 * 153.57889 * 11 9 7 13 13 N 1.47018 * 107.26788 * 337.80820 * 12 11 9 14 14 C 1.34776 * 125.64565 * 178.96506 * 13 12 11 15 15 O 1.21284 * 120.00184 * 179.97438 * 14 13 12 16 16 C 1.50707 * 119.99995 * 359.96921 * 14 13 12 17 17 C 1.50698 * 109.46728 * 180.02562 * 16 14 13 18 18 C 1.38227 * 119.61807 * 125.00581 * 17 16 14 19 19 C 1.38625 * 119.16713 * 179.97438 * 18 17 16 20 20 C 1.38683 * 118.41546 * 359.97438 * 19 18 17 21 21 C 1.38180 * 119.16321 * 0.02562 * 20 19 18 22 22 N 1.31851 * 119.61877 * 304.72023 * 17 16 14 23 23 C 1.47426 * 108.70768 * 358.93781 * 13 12 11 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09000 * 110.72424 * 271.94098 * 11 9 7 26 26 H 1.09000 * 110.72236 * 35.04042 * 11 9 7 27 27 H 1.09000 * 109.88170 * 97.22423 * 12 11 9 28 28 H 1.09002 * 109.87983 * 218.23343 * 12 11 9 29 29 H 1.09000 * 109.46671 * 300.00321 * 16 14 13 30 30 H 1.09000 * 109.46839 * 60.00310 * 16 14 13 31 31 H 1.08004 * 120.41722 * 359.94567 * 18 17 16 32 32 H 1.08000 * 120.79446 * 179.97438 * 19 18 17 33 33 H 1.07992 * 120.41689 * 179.97438 * 20 19 18 34 34 H 1.08001 * 119.61621 * 179.97438 * 21 20 19 35 35 H 1.09000 * 110.36680 * 265.29586 * 23 13 12 36 36 H 1.09002 * 110.36562 * 142.96806 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6482 -2.5998 0.9031 11 6 0.3741 -2.6349 -1.2721 12 6 0.2590 -4.1635 -1.4511 13 7 1.3946 -4.7725 -0.7433 14 6 1.6419 -6.0938 -0.6455 15 8 2.6136 -6.4853 -0.0343 16 6 0.7110 -7.0848 -1.2955 17 6 1.2082 -8.4840 -1.0387 18 6 0.3665 -9.4116 -0.4540 19 6 0.8334 -10.6961 -0.2225 20 6 2.1353 -11.0014 -0.5901 21 6 2.9184 -10.0218 -1.1701 22 7 2.4392 -8.8110 -1.3796 23 6 2.2183 -3.6986 -0.1588 24 1 -0.4850 -0.8401 -0.0004 25 1 -0.6082 -2.1903 -1.1129 26 1 0.8674 -2.1795 -2.1309 27 1 -0.6783 -4.5174 -1.0218 28 1 0.3003 -4.4169 -2.5104 29 1 -0.2891 -6.9723 -0.8769 30 1 0.6781 -6.9019 -2.3695 31 1 -0.6421 -9.1388 -0.1804 32 1 0.1984 -11.4415 0.2332 33 1 2.5323 -11.9919 -0.4243 34 1 3.9335 -10.2514 -1.4589 35 1 3.0364 -3.4396 -0.8309 36 1 2.6066 -4.0045 0.8127 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260069079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:19 Heat of formation + Delta-G solvation = -4.537200 kcal Electronic energy + Delta-G solvation = -18746.922853 eV Core-core repulsion = 15809.675524 eV Total energy + Delta-G solvation = -2937.247330 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.41433 -39.18633 -36.86549 -33.38211 -33.01042 -32.36515 -30.25982 -28.74210 -27.87425 -24.47118 -23.60572 -22.96407 -21.93241 -19.97485 -18.78802 -17.21632 -16.93437 -16.59944 -16.12215 -15.69359 -15.37834 -14.87483 -13.96626 -13.83644 -13.69790 -13.31789 -13.06245 -12.87811 -12.52558 -12.15236 -11.95489 -11.80835 -11.73376 -11.33410 -10.96735 -10.72377 -10.14128 -9.94136 -9.91546 -9.69353 -9.55011 -9.33254 -9.01269 -8.61663 -8.42903 -8.05176 -6.40922 -4.15006 1.01200 1.23389 3.05486 3.40449 3.43047 3.44448 3.62157 3.83984 4.19314 4.48867 4.58402 4.73071 4.88857 4.99338 5.06156 5.27983 5.30078 5.35735 5.47694 5.56517 5.63539 5.69612 5.83981 6.01260 6.04150 6.10853 6.22262 6.51613 6.60261 6.67498 6.80310 6.90578 7.07443 7.48535 8.01014 8.07048 8.11210 8.35866 8.62584 8.79690 9.56658 10.96544 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.056501 B = 0.003780 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.448299 B = 7404.739131 C = 7676.050497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.023 3.977 3 Si 1.068 2.932 4 H -0.283 1.283 5 H -0.287 1.287 6 H -0.287 1.287 7 C -0.594 4.594 8 H 0.053 0.947 9 C 0.029 3.971 10 H 0.030 0.970 11 C -0.126 4.126 12 C 0.097 3.903 13 N -0.616 5.616 14 C 0.528 3.472 15 O -0.536 6.536 16 C -0.090 4.090 17 C 0.149 3.851 18 C -0.169 4.169 19 C -0.077 4.077 20 C -0.181 4.181 21 C 0.103 3.897 22 N -0.456 5.456 23 C 0.118 3.882 24 H 0.272 0.728 25 H 0.073 0.927 26 H 0.068 0.932 27 H 0.057 0.943 28 H 0.056 0.944 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.132 0.868 34 H 0.154 0.846 35 H 0.061 0.939 36 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.047 -18.061 -3.653 18.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.181 4.181 3 Si 0.896 3.104 4 H -0.208 1.208 5 H -0.214 1.214 6 H -0.214 1.214 7 C -0.633 4.633 8 H 0.071 0.929 9 C 0.009 3.991 10 H 0.048 0.952 11 C -0.165 4.165 12 C -0.026 4.026 13 N -0.350 5.350 14 C 0.315 3.685 15 O -0.413 6.413 16 C -0.130 4.130 17 C 0.011 3.989 18 C -0.189 4.189 19 C -0.103 4.103 20 C -0.201 4.201 21 C -0.054 4.054 22 N -0.164 5.164 23 C -0.003 4.003 24 H 0.084 0.916 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.124 0.876 30 H 0.127 0.873 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.150 0.850 34 H 0.171 0.829 35 H 0.079 0.921 36 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.183 -16.070 -3.712 16.535 hybrid contribution -0.420 -2.379 0.355 2.442 sum -1.603 -18.449 -3.356 18.820 Atomic orbital electron populations 1.70836 1.06843 1.30977 1.46059 1.25796 0.96494 1.02530 0.93316 0.83543 0.74907 0.75250 0.76651 1.20784 1.21387 1.21385 1.21811 0.94268 0.90807 1.56396 0.92854 1.20008 0.92995 0.92970 0.93079 0.95206 1.22875 1.01771 0.90294 1.01541 1.22176 0.88391 0.96606 0.95402 1.48715 1.27750 1.05002 1.53512 1.19762 0.86070 0.81541 0.81085 1.90695 1.29525 1.78313 1.42800 1.20610 0.99544 0.89497 1.03374 1.20638 0.89662 0.94642 0.93971 1.21935 1.01335 0.94339 1.01292 1.21514 0.95709 0.96313 0.96813 1.22129 0.95371 1.01137 1.01472 1.22762 0.99836 0.88087 0.94761 1.67470 1.13271 1.19025 1.16670 1.22421 0.94544 0.86116 0.97241 0.91618 0.90870 0.91299 0.92489 0.92542 0.87620 0.87278 0.84815 0.84932 0.84994 0.82901 0.92087 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -25.99 13.43 55.43 0.74 -25.25 16 2 C 0.02 0.64 5.34 -17.82 -0.10 0.54 16 3 Si 1.07 24.39 29.90 -169.99 -5.08 19.31 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 6 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.59 -16.09 8.55 -34.44 -0.29 -16.38 16 8 H 0.05 1.45 7.79 -52.48 -0.41 1.04 16 9 C 0.03 0.69 2.58 -89.62 -0.23 0.46 16 10 H 0.03 0.77 8.10 -51.93 -0.42 0.35 16 11 C -0.13 -2.65 5.58 -24.89 -0.14 -2.79 16 12 C 0.10 1.65 6.49 -3.06 -0.02 1.63 16 13 N -0.62 -11.90 3.33 -170.51 -0.57 -12.47 16 14 C 0.53 9.92 7.78 -10.98 -0.09 9.84 16 15 O -0.54 -12.09 15.60 5.55 0.09 -12.00 16 16 C -0.09 -1.23 5.29 -29.03 -0.15 -1.39 16 17 C 0.15 2.13 5.76 -82.59 -0.48 1.65 16 18 C -0.17 -1.90 9.71 -39.44 -0.38 -2.29 16 19 C -0.08 -0.75 10.18 -39.27 -0.40 -1.15 16 20 C -0.18 -1.80 10.11 -39.44 -0.40 -2.20 16 21 C 0.10 1.28 11.18 -17.55 -0.20 1.08 16 22 N -0.46 -7.20 9.24 -9.47 -0.09 -7.29 16 23 C 0.12 2.63 6.35 -2.53 -0.02 2.61 16 24 H 0.27 7.54 5.32 -40.82 -0.22 7.32 16 25 H 0.07 1.57 6.46 -51.93 -0.34 1.23 16 26 H 0.07 1.52 8.03 -51.93 -0.42 1.10 16 27 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.11 1.14 7.87 -51.93 -0.41 0.73 16 30 H 0.11 1.32 8.14 -51.93 -0.42 0.90 16 31 H 0.13 1.15 7.95 -52.48 -0.42 0.73 16 32 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 33 H 0.13 0.90 8.06 -52.49 -0.42 0.47 16 34 H 0.15 1.50 8.06 -52.49 -0.42 1.08 16 35 H 0.06 1.39 8.03 -51.93 -0.42 0.98 16 36 H 0.06 1.41 8.04 -51.93 -0.42 0.99 16 LS Contribution 303.90 15.07 4.58 4.58 Total: -1.00 -33.19 303.90 -8.01 -41.20 By element: Atomic # 1 Polarization: 5.08 SS G_CDS: -4.79 Total: 0.29 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -2.89 Total: -8.38 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.09 Total: -45.00 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: 0.09 Total: -12.00 kcal Atomic # 14 Polarization: 24.39 SS G_CDS: -5.08 Total: 19.31 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.19 -8.01 -41.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260069079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.662 kcal (2) G-P(sol) polarization free energy of solvation -33.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds