Wall clock time and date at job start Mon Mar 30 2020 04:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 H 1.09003 * 110.88275 * 297.57642 * 9 7 2 11 11 C 1.55154 * 111.00112 * 61.45201 * 9 7 2 12 12 C 1.54330 * 102.94062 * 153.57889 * 11 9 7 13 13 N 1.47018 * 107.26788 * 337.80820 * 12 11 9 14 14 C 1.34776 * 125.64565 * 178.96506 * 13 12 11 15 15 O 1.21284 * 120.00184 * 179.97438 * 14 13 12 16 16 C 1.50707 * 119.99995 * 359.96921 * 14 13 12 17 17 C 1.50698 * 109.46728 * 180.02562 * 16 14 13 18 18 C 1.38227 * 119.61807 * 125.00581 * 17 16 14 19 19 C 1.38625 * 119.16713 * 179.97438 * 18 17 16 20 20 C 1.38683 * 118.41546 * 359.97438 * 19 18 17 21 21 C 1.38180 * 119.16321 * 0.02562 * 20 19 18 22 22 N 1.31851 * 119.61877 * 304.72023 * 17 16 14 23 23 C 1.47426 * 108.70768 * 358.93781 * 13 12 11 24 24 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 25 25 H 1.09000 * 110.72424 * 271.94098 * 11 9 7 26 26 H 1.09000 * 110.72236 * 35.04042 * 11 9 7 27 27 H 1.09000 * 109.88170 * 97.22423 * 12 11 9 28 28 H 1.09002 * 109.87983 * 218.23343 * 12 11 9 29 29 H 1.09000 * 109.46671 * 300.00321 * 16 14 13 30 30 H 1.09000 * 109.46839 * 60.00310 * 16 14 13 31 31 H 1.08004 * 120.41722 * 359.94567 * 18 17 16 32 32 H 1.08000 * 120.79446 * 179.97438 * 19 18 17 33 33 H 1.07992 * 120.41689 * 179.97438 * 20 19 18 34 34 H 1.08001 * 119.61621 * 179.97438 * 21 20 19 35 35 H 1.09000 * 110.36680 * 265.29586 * 23 13 12 36 36 H 1.09002 * 110.36562 * 142.96806 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 1 0.6482 -2.5998 0.9031 11 6 0.3741 -2.6349 -1.2721 12 6 0.2590 -4.1635 -1.4511 13 7 1.3946 -4.7725 -0.7433 14 6 1.6419 -6.0938 -0.6455 15 8 2.6136 -6.4853 -0.0343 16 6 0.7110 -7.0848 -1.2955 17 6 1.2082 -8.4840 -1.0387 18 6 0.3665 -9.4116 -0.4540 19 6 0.8334 -10.6961 -0.2225 20 6 2.1353 -11.0014 -0.5901 21 6 2.9184 -10.0218 -1.1701 22 7 2.4392 -8.8110 -1.3796 23 6 2.2183 -3.6986 -0.1588 24 1 -0.4850 -0.8401 -0.0004 25 1 -0.6082 -2.1903 -1.1129 26 1 0.8674 -2.1795 -2.1309 27 1 -0.6783 -4.5174 -1.0218 28 1 0.3003 -4.4169 -2.5104 29 1 -0.2891 -6.9723 -0.8769 30 1 0.6781 -6.9019 -2.3695 31 1 -0.6421 -9.1388 -0.1804 32 1 0.1984 -11.4415 0.2332 33 1 2.5323 -11.9919 -0.4243 34 1 3.9335 -10.2514 -1.4589 35 1 3.0364 -3.4396 -0.8309 36 1 2.6066 -4.0045 0.8127 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260069079.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:18 Heat of formation + Delta-G solvation = -25.608805 kcal Electronic energy + Delta-G solvation = -18747.836587 eV Core-core repulsion = 15809.675524 eV Total energy + Delta-G solvation = -2938.161063 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.46918 -40.54539 -38.51231 -35.28301 -34.03289 -33.23590 -31.94961 -30.30115 -29.11689 -26.38723 -24.54766 -24.33384 -23.04734 -21.80873 -20.23362 -19.08744 -18.11593 -17.70643 -17.36470 -16.91444 -16.58413 -16.10839 -15.65809 -15.47035 -14.81332 -14.42256 -14.30244 -14.22621 -13.94476 -13.65559 -13.62799 -13.27887 -12.96677 -12.75398 -12.57407 -12.44773 -11.93305 -11.74012 -11.55576 -10.99079 -10.77162 -10.64255 -10.49355 -10.27290 -9.90528 -9.62994 -8.58652 -6.33563 0.16594 0.43566 1.56583 1.62705 1.63015 1.82617 2.02007 2.58380 2.90392 3.19080 3.28090 3.62592 3.79346 3.90306 4.03535 4.15901 4.19819 4.26017 4.27323 4.36344 4.43611 4.50761 4.60035 4.65197 4.77202 4.86054 4.90477 5.09864 5.22343 5.22628 5.27875 5.29831 5.55968 5.82461 6.04917 6.18882 6.57717 6.67199 7.14419 7.15841 7.44610 8.80653 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.056501 B = 0.003780 C = 0.003647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 495.448299 B = 7404.739131 C = 7676.050497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C -0.020 4.020 3 Si 1.111 2.889 4 H -0.282 1.282 5 H -0.277 1.277 6 H -0.273 1.273 7 C -0.614 4.614 8 H 0.042 0.958 9 C 0.021 3.979 10 H 0.008 0.992 11 C -0.117 4.117 12 C 0.106 3.894 13 N -0.619 5.619 14 C 0.523 3.477 15 O -0.582 6.582 16 C -0.078 4.078 17 C 0.114 3.886 18 C -0.169 4.169 19 C -0.079 4.079 20 C -0.173 4.173 21 C 0.076 3.924 22 N -0.504 5.504 23 C 0.128 3.872 24 H 0.267 0.733 25 H 0.067 0.933 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.090 0.910 29 H 0.141 0.859 30 H 0.127 0.873 31 H 0.162 0.838 32 H 0.170 0.830 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.048 0.952 36 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.412 -19.868 -4.188 20.590 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.219 4.219 3 Si 0.934 3.066 4 H -0.207 1.207 5 H -0.202 1.202 6 H -0.198 1.198 7 C -0.652 4.652 8 H 0.061 0.939 9 C 0.002 3.998 10 H 0.026 0.974 11 C -0.156 4.156 12 C -0.016 4.016 13 N -0.353 5.353 14 C 0.313 3.687 15 O -0.461 6.461 16 C -0.118 4.118 17 C -0.024 4.024 18 C -0.189 4.189 19 C -0.104 4.104 20 C -0.192 4.192 21 C -0.081 4.081 22 N -0.214 5.214 23 C 0.005 3.995 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.072 0.928 27 H 0.108 0.892 28 H 0.108 0.892 29 H 0.159 0.841 30 H 0.145 0.855 31 H 0.180 0.820 32 H 0.187 0.813 33 H 0.183 0.817 34 H 0.181 0.819 35 H 0.066 0.934 36 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -2.567 -17.904 -4.265 18.583 hybrid contribution 0.043 -1.911 0.572 1.995 sum -2.524 -19.815 -3.693 20.314 Atomic orbital electron populations 1.70920 1.07496 1.30878 1.47557 1.27056 0.96676 1.05705 0.92496 0.82984 0.74197 0.71804 0.77639 1.20699 1.20248 1.19791 1.22136 0.94115 0.92548 1.56376 0.93919 1.19922 0.93563 0.92598 0.93735 0.97429 1.22648 1.00323 0.93651 0.98962 1.22240 0.88770 0.93150 0.97464 1.48782 1.27911 1.04958 1.53644 1.20758 0.86200 0.81528 0.80230 1.90668 1.31741 1.78919 1.44817 1.20661 0.99422 0.87753 1.03959 1.20861 0.90109 0.95426 0.95985 1.22273 1.02176 0.94436 0.99972 1.22021 0.95976 0.96556 0.95885 1.22503 0.95321 1.01856 0.99533 1.23126 1.00983 0.88096 0.95870 1.67367 1.14668 1.20896 1.18442 1.22037 0.94314 0.86815 0.96331 0.92141 0.91404 0.92761 0.89175 0.89191 0.84109 0.85548 0.82034 0.81299 0.81737 0.81852 0.93372 0.93899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.66 13.43 21.45 0.29 -53.37 16 2 C -0.02 -1.08 5.34 84.65 0.45 -0.63 16 3 Si 1.11 49.22 29.90 68.60 2.05 51.27 16 4 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 6 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 7 C -0.61 -34.06 8.55 25.60 0.22 -33.85 16 8 H 0.04 2.39 7.79 -2.91 -0.02 2.37 16 9 C 0.02 1.04 2.58 -10.15 -0.03 1.01 16 10 H 0.01 0.41 8.10 -2.39 -0.02 0.39 16 11 C -0.12 -4.90 5.58 31.78 0.18 -4.72 16 12 C 0.11 3.34 6.49 86.73 0.56 3.90 16 13 N -0.62 -23.54 3.33 -811.77 -2.70 -26.24 16 14 C 0.52 19.28 7.78 87.66 0.68 19.97 16 15 O -0.58 -26.73 15.60 -3.04 -0.05 -26.78 16 16 C -0.08 -1.96 5.29 29.10 0.15 -1.80 16 17 C 0.11 3.07 5.76 42.55 0.24 3.31 16 18 C -0.17 -3.29 9.71 22.36 0.22 -3.07 16 19 C -0.08 -1.25 10.18 22.47 0.23 -1.02 16 20 C -0.17 -2.97 10.11 22.36 0.23 -2.75 16 21 C 0.08 1.84 11.18 84.67 0.95 2.78 16 22 N -0.50 -15.77 9.24 -183.89 -1.70 -17.47 16 23 C 0.13 5.87 6.35 86.85 0.55 6.42 16 24 H 0.27 15.07 5.32 -92.71 -0.49 14.57 16 25 H 0.07 2.89 6.46 -2.39 -0.02 2.88 16 26 H 0.05 2.39 8.03 -2.39 -0.02 2.38 16 27 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 28 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.14 2.45 7.87 -2.39 -0.02 2.43 16 30 H 0.13 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.16 2.08 7.95 -2.91 -0.02 2.06 16 32 H 0.17 1.40 8.06 -2.91 -0.02 1.37 16 33 H 0.17 1.64 8.06 -2.91 -0.02 1.61 16 34 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 35 H 0.05 2.29 8.03 -2.39 -0.02 2.28 16 36 H 0.04 2.07 8.04 -2.39 -0.02 2.05 16 Total: -1.00 -75.35 303.90 3.87 -71.48 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: 1.34 Total: 11.55 kcal Atomic # 6 Polarization: -15.07 SS G_CDS: 4.64 Total: -10.44 kcal Atomic # 7 Polarization: -92.97 SS G_CDS: -4.11 Total: -97.08 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.05 Total: -26.78 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.05 Total: 51.27 kcal Total: -75.35 3.87 -71.48 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260069079.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.870 kcal (2) G-P(sol) polarization free energy of solvation -75.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.478 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds