Wall clock time and date at job start Mon Mar 30 2020 04:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 120.00112 * 2 1 4 4 H 1.48494 * 109.47228 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46793 * 299.99983 * 3 2 1 6 6 H 1.48500 * 109.47000 * 60.00075 * 3 2 1 7 7 C 1.37885 * 120.00035 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99675 * 179.72276 * 7 2 1 9 9 C 1.50695 * 119.99721 * 0.02562 * 7 2 1 10 10 H 1.08999 * 110.43608 * 61.08798 * 9 7 2 11 11 C 1.54262 * 110.48866 * 298.54531 * 9 7 2 12 12 C 1.53882 * 106.59796 * 217.71436 * 11 9 7 13 13 C 1.54261 * 106.59772 * 359.97438 * 12 11 9 14 14 H 1.09002 * 110.48922 * 264.79625 * 13 12 11 15 15 N 1.46500 * 110.48601 * 142.28644 * 13 12 11 16 16 C 1.34781 * 119.99662 * 86.44992 * 15 13 12 17 17 O 1.21511 * 120.00086 * 0.02562 * 16 15 13 18 18 C 1.48169 * 119.99904 * 179.97438 * 16 15 13 19 19 C 1.39311 * 119.72125 * 179.73088 * 18 16 15 20 20 C 1.38593 * 119.05622 * 179.75625 * 19 18 16 21 21 C 1.38625 * 118.48889 * 0.51324 * 20 19 18 22 22 C 1.38557 * 119.35297 * 359.72532 * 21 20 19 23 23 N 1.31523 * 120.90327 * 0.02757 * 22 21 20 24 24 C 1.54891 * 104.19872 * 23.61319 * 13 12 11 25 25 H 0.97000 * 119.99706 * 359.97438 * 1 2 3 26 26 H 1.08999 * 110.03224 * 336.99585 * 11 9 7 27 27 H 1.08997 * 110.03443 * 98.42863 * 11 9 7 28 28 H 1.08999 * 110.02750 * 119.28583 * 12 11 9 29 29 H 1.08997 * 110.02884 * 240.66455 * 12 11 9 30 30 H 0.96999 * 120.00790 * 266.45762 * 15 13 12 31 31 H 1.07999 * 120.47155 * 359.97438 * 19 18 16 32 32 H 1.07998 * 120.75417 * 180.23914 * 20 19 18 33 33 H 1.07999 * 120.32811 * 179.75250 * 21 20 19 34 34 H 1.07996 * 119.55348 * 180.02562 * 22 21 20 35 35 H 1.08994 * 110.75619 * 203.74434 * 24 13 12 36 36 H 1.08995 * 110.75895 * 80.36837 * 24 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8904 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 -0.0040 9 6 1.2510 -2.4991 0.0005 10 1 0.6334 -2.5820 -0.8938 11 6 0.3826 -2.6212 1.2696 12 6 0.4439 -4.0961 1.7040 13 6 1.3469 -4.8189 0.6834 14 1 0.7447 -5.2807 -0.0990 15 7 2.1742 -5.8255 1.3533 16 6 1.6929 -7.0684 1.5536 17 8 0.5731 -7.3542 1.1782 18 6 2.5297 -8.0867 2.2306 19 6 2.0244 -9.3680 2.4397 20 6 2.8209 -10.3111 3.0698 21 6 4.0915 -9.9367 3.4786 22 6 4.5272 -8.6428 3.2423 23 7 3.7523 -7.7689 2.6376 24 6 2.2333 -3.6928 0.0958 25 1 -0.4850 0.8401 0.0004 26 1 0.7816 -1.9829 2.0579 27 1 -0.6466 -2.3402 1.0462 28 1 0.8726 -4.1735 2.7032 29 1 -0.5557 -4.5306 1.6923 30 1 3.0682 -5.5975 1.6528 31 1 1.0275 -9.6237 2.1124 32 1 2.4582 -11.3136 3.2423 33 1 4.7357 -10.6466 3.9759 34 1 5.5166 -8.3477 3.5590 35 1 2.6037 -3.9682 -0.8915 36 1 3.0589 -3.4603 0.7684 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000295522471.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:15:50 Heat of formation + Delta-G solvation = -35.512537 kcal Electronic energy + Delta-G solvation = -18616.107231 eV Core-core repulsion = 15677.516710 eV Total energy + Delta-G solvation = -2938.590521 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.61838 -40.22359 -38.63645 -35.42653 -34.07055 -33.29611 -32.33399 -29.99557 -28.83325 -26.16978 -25.14480 -24.36137 -22.06185 -21.52597 -20.79719 -19.08390 -18.45446 -17.69652 -16.92349 -16.76179 -16.57741 -16.15136 -15.96105 -15.84965 -15.00917 -14.53960 -14.38560 -14.12976 -14.00070 -13.69124 -13.09791 -12.88673 -12.81675 -12.57404 -12.38174 -12.16118 -11.73242 -11.45250 -11.36029 -11.09688 -10.93730 -10.75464 -10.51098 -10.48227 -10.27759 -9.97504 -8.10292 -6.20479 -0.34309 0.28546 1.42367 1.44150 1.55603 1.71451 2.08182 2.45647 2.89684 3.15173 3.20847 3.78120 3.93466 3.98705 3.99996 4.07489 4.12500 4.17458 4.51840 4.65553 4.75292 4.79522 4.83777 4.97959 5.02303 5.09232 5.11641 5.17863 5.29343 5.40514 5.57429 5.66960 5.67279 5.90846 5.97179 6.37223 6.43802 6.83359 6.90549 7.13999 7.47220 8.99031 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.042638 B = 0.003854 C = 0.003635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.539679 B = 7264.367083 C = 7701.764855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.921 5.921 2 C 0.009 3.991 3 Si 0.956 3.044 4 H -0.263 1.263 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.040 3.960 10 H 0.001 0.999 11 C -0.082 4.082 12 C -0.123 4.123 13 C 0.146 3.854 14 H 0.075 0.925 15 N -0.690 5.690 16 C 0.561 3.439 17 O -0.575 6.575 18 C 0.052 3.948 19 C -0.124 4.124 20 C -0.078 4.078 21 C -0.134 4.134 22 C 0.088 3.912 23 N -0.482 5.482 24 C -0.104 4.104 25 H 0.259 0.741 26 H 0.035 0.965 27 H 0.030 0.970 28 H 0.063 0.937 29 H 0.051 0.949 30 H 0.416 0.584 31 H 0.141 0.859 32 H 0.176 0.824 33 H 0.182 0.818 34 H 0.192 0.808 35 H 0.064 0.936 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.990 -20.700 8.426 24.480 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.190 4.190 3 Si 0.782 3.218 4 H -0.187 1.187 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.021 3.979 10 H 0.019 0.981 11 C -0.121 4.121 12 C -0.162 4.162 13 C 0.042 3.958 14 H 0.093 0.907 15 N -0.340 5.340 16 C 0.347 3.653 17 O -0.454 6.454 18 C -0.085 4.085 19 C -0.145 4.145 20 C -0.104 4.104 21 C -0.154 4.154 22 C -0.072 4.072 23 N -0.194 5.194 24 C -0.142 4.142 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.049 0.951 28 H 0.082 0.918 29 H 0.070 0.930 30 H 0.254 0.746 31 H 0.159 0.841 32 H 0.194 0.806 33 H 0.200 0.800 34 H 0.209 0.791 35 H 0.083 0.917 36 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.324 -19.888 7.979 23.370 hybrid contribution -0.145 0.616 0.057 0.636 sum 9.179 -19.272 8.036 22.809 Atomic orbital electron populations 1.70123 1.07358 1.27111 1.51414 1.25808 0.95653 1.02592 0.94903 0.85535 0.79258 0.79642 0.77393 1.18731 1.20886 1.20841 1.21538 0.93172 0.91562 1.50425 0.92226 1.19393 0.92779 0.92527 0.93180 0.98079 1.21819 0.99105 0.92590 0.98543 1.22497 0.98932 0.96126 0.98630 1.21803 0.92412 0.87550 0.94057 0.90694 1.45931 1.19599 1.10146 1.58315 1.18455 0.85668 0.82563 0.78623 1.90736 1.20799 1.80838 1.53059 1.20924 0.92591 0.93847 1.01125 1.22278 1.01992 0.92617 0.97648 1.22065 0.93636 1.00620 0.94071 1.22870 0.96711 0.97858 0.97923 1.23478 0.99963 0.90068 0.93685 1.67500 1.03910 1.38210 1.09787 1.22661 0.97938 0.93625 1.00020 0.93176 0.94603 0.95069 0.91835 0.92995 0.74617 0.84092 0.80647 0.80020 0.79086 0.91747 0.90872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.45 12.35 21.45 0.26 -54.18 16 2 C 0.01 0.51 5.33 84.66 0.45 0.96 16 3 Si 0.96 43.86 29.54 68.60 2.03 45.89 16 4 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 5 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 7 C -0.53 -29.13 8.40 25.60 0.22 -28.91 16 8 H 0.06 3.17 7.78 -2.91 -0.02 3.15 16 9 C 0.04 2.04 2.79 -10.47 -0.03 2.01 16 10 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 11 C -0.08 -4.02 5.40 31.32 0.17 -3.85 16 12 C -0.12 -5.06 6.53 31.32 0.20 -4.86 16 13 C 0.15 5.63 3.16 46.06 0.15 5.78 16 14 H 0.07 3.08 7.66 -2.39 -0.02 3.06 16 15 N -0.69 -22.96 5.10 -440.01 -2.25 -25.20 16 16 C 0.56 19.02 7.81 86.88 0.68 19.70 16 17 O -0.57 -22.96 16.03 -3.75 -0.06 -23.02 16 18 C 0.05 1.39 6.75 41.91 0.28 1.67 16 19 C -0.12 -2.63 9.63 22.61 0.22 -2.42 16 20 C -0.08 -0.97 10.17 22.45 0.23 -0.74 16 21 C -0.13 -1.30 10.11 22.44 0.23 -1.07 16 22 C 0.09 1.28 11.18 84.82 0.95 2.23 16 23 N -0.48 -11.24 9.54 -184.91 -1.76 -13.00 16 24 C -0.10 -4.25 5.88 31.88 0.19 -4.07 16 25 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 26 H 0.04 1.84 7.83 -2.39 -0.02 1.82 16 27 H 0.03 1.65 7.94 -2.39 -0.02 1.63 16 28 H 0.06 2.45 8.04 -2.39 -0.02 2.43 16 29 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.42 12.39 7.86 -92.71 -0.73 11.66 16 31 H 0.14 3.07 7.64 -2.91 -0.02 3.05 16 32 H 0.18 0.90 8.06 -2.91 -0.02 0.87 16 33 H 0.18 0.23 8.06 -2.91 -0.02 0.21 16 34 H 0.19 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.06 2.47 8.14 -2.39 -0.02 2.46 16 36 H 0.07 2.84 7.93 -2.39 -0.02 2.82 16 Total: -1.00 -70.00 306.62 2.50 -67.50 By element: Atomic # 1 Polarization: 15.23 SS G_CDS: 0.35 Total: 15.59 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 3.93 Total: -13.56 kcal Atomic # 7 Polarization: -88.64 SS G_CDS: -3.75 Total: -92.38 kcal Atomic # 8 Polarization: -22.96 SS G_CDS: -0.06 Total: -23.02 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.00 2.50 -67.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000295522471.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.986 kcal (2) G-P(sol) polarization free energy of solvation -69.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds