Wall clock time and date at job start Mon Mar 30 2020 05:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31572 * 118.99490 * 2 1 4 4 C 1.33429 * 120.89620 * 180.02562 * 3 2 1 5 5 C 1.43197 * 120.52268 * 179.97438 * 4 3 2 6 6 N 4.70600 * 132.86592 * 359.97438 * 2 1 3 7 7 C 1.39298 * 118.95629 * 0.02562 * 4 3 2 8 8 C 1.39661 * 118.18811 * 359.97438 * 7 4 3 9 9 N 1.38546 * 120.50116 * 179.97438 * 8 7 4 10 10 C 1.46499 * 119.99756 * 5.00314 * 9 8 7 11 11 C 1.50701 * 109.46992 * 89.99938 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 C 1.46504 * 119.99862 * 185.00597 * 9 8 7 20 20 C 1.52996 * 109.46875 * 299.99723 * 19 9 8 21 21 C 1.52998 * 109.47328 * 59.99770 * 19 9 8 22 22 N 1.31828 * 118.99129 * 180.26682 * 2 1 3 23 23 H 1.08995 * 109.47126 * 90.00130 * 1 2 3 24 24 H 1.09001 * 109.47678 * 210.00581 * 1 2 3 25 25 H 1.09002 * 109.46930 * 330.00427 * 1 2 3 26 26 H 1.08001 * 120.90667 * 180.02562 * 7 4 3 27 27 H 1.09002 * 109.47391 * 329.99928 * 10 9 8 28 28 H 1.09001 * 109.46813 * 209.99985 * 10 9 8 29 29 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 30 30 H 1.08997 * 109.46554 * 180.02562 * 19 9 8 31 31 H 1.09004 * 109.47604 * 60.00544 * 20 19 9 32 32 H 1.09004 * 109.47401 * 180.02562 * 20 19 9 33 33 H 1.09003 * 109.47670 * 300.00557 * 20 19 9 34 34 H 1.09005 * 109.46744 * 60.00047 * 21 19 9 35 35 H 1.08994 * 109.46866 * 179.97438 * 21 19 9 36 36 H 1.08996 * 109.47079 * 300.00309 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1448 1.1508 0.0000 4 6 3.4783 1.1951 -0.0005 5 6 4.1643 2.4521 -0.0011 6 7 4.7084 3.4493 -0.0015 7 6 4.1928 -0.0007 -0.0016 8 6 3.4745 -1.1984 -0.0015 9 7 4.1365 -2.4155 -0.0031 10 6 5.5969 -2.4550 0.1058 11 6 5.9904 -2.5287 1.5586 12 1 5.2289 -2.5449 2.3242 13 6 7.3228 -2.5765 1.9104 14 7 8.2501 -2.5572 0.9781 15 14 7.8105 -2.6685 3.7112 16 1 6.5887 -2.6774 4.5552 17 1 8.5862 -3.9120 3.9509 18 1 8.6444 -1.4900 4.0590 19 6 3.3761 -3.6628 -0.1138 20 6 2.4031 -3.7728 1.0618 21 6 2.5915 -3.6671 -1.4273 22 7 2.1459 -1.1531 -0.0054 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 5.2728 -0.0016 -0.0016 27 1 6.0190 -1.5542 -0.3398 28 1 5.9767 -3.3319 -0.4185 29 1 9.1874 -2.5905 1.2256 30 1 4.0625 -4.5093 -0.0973 31 1 1.7166 -2.9263 1.0458 32 1 1.8376 -4.7011 0.9798 33 1 2.9619 -3.7697 1.9976 34 1 3.2848 -3.5886 -2.2648 35 1 2.0262 -4.5953 -1.5097 36 1 1.9052 -2.8205 -1.4433 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308157761.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:43 Heat of formation + Delta-G solvation = 84.570130 kcal Electronic energy + Delta-G solvation = -19367.156870 eV Core-core repulsion = 16466.066275 eV Total energy + Delta-G solvation = -2901.090595 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.74319 -37.55495 -36.42421 -33.57616 -32.88797 -32.79735 -30.83106 -28.11627 -27.03256 -26.69857 -24.86732 -23.43607 -21.84621 -20.31007 -18.45718 -17.18930 -16.66421 -15.83891 -15.13360 -14.91786 -14.58983 -14.16991 -13.81051 -13.56945 -13.41489 -13.20047 -12.84505 -12.65353 -12.40927 -12.32683 -12.23461 -11.96786 -11.67604 -11.44554 -11.23891 -10.95952 -10.90454 -10.50058 -10.38926 -10.28161 -10.05809 -9.72919 -9.22410 -8.78394 -8.66193 -7.28860 -6.26264 -4.35602 0.90763 1.65747 2.68559 3.17150 3.20250 3.26421 3.29005 3.40881 3.76240 4.24666 4.29967 4.43709 4.91151 5.06735 5.28604 5.40060 5.56096 5.58725 5.66662 5.68110 5.80455 5.89332 6.02006 6.06084 6.14751 6.25715 6.37558 6.56310 6.63293 6.76744 6.86345 7.01178 7.22261 7.51194 7.65029 7.87934 7.92256 8.00289 8.57919 8.74626 9.32703 10.78959 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.015133 B = 0.007846 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.861425 B = 3567.821479 C = 4738.811629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.356 3.644 3 N -0.555 5.555 4 C 0.254 3.746 5 C 0.281 3.719 6 N -0.398 5.398 7 C -0.226 4.226 8 C 0.458 3.542 9 N -0.558 5.558 10 C 0.244 3.756 11 C -0.539 4.539 12 H 0.063 0.937 13 C 0.066 3.934 14 N -0.890 5.890 15 Si 0.897 3.103 16 H -0.272 1.272 17 H -0.282 1.282 18 H -0.281 1.281 19 C 0.153 3.847 20 C -0.167 4.167 21 C -0.165 4.165 22 N -0.569 5.569 23 H 0.081 0.919 24 H 0.083 0.917 25 H 0.081 0.919 26 H 0.159 0.841 27 H 0.040 0.960 28 H 0.043 0.957 29 H 0.266 0.734 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.057 0.943 36 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.209 -1.120 -3.139 12.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.086 3.914 3 N -0.278 5.278 4 C 0.113 3.887 5 C -0.037 4.037 6 N -0.075 5.075 7 C -0.259 4.259 8 C 0.212 3.788 9 N -0.266 5.266 10 C 0.125 3.875 11 C -0.577 4.577 12 H 0.081 0.919 13 C -0.137 4.137 14 N -0.528 5.528 15 Si 0.724 3.276 16 H -0.196 1.196 17 H -0.207 1.207 18 H -0.207 1.207 19 C 0.050 3.950 20 C -0.225 4.225 21 C -0.223 4.223 22 N -0.296 5.296 23 H 0.100 0.900 24 H 0.102 0.898 25 H 0.100 0.900 26 H 0.176 0.824 27 H 0.058 0.942 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.070 0.930 33 H 0.072 0.928 34 H 0.067 0.933 35 H 0.076 0.924 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -11.972 0.184 -3.179 12.388 hybrid contribution 1.344 -0.531 1.055 1.789 sum -10.627 -0.347 -2.124 10.843 Atomic orbital electron populations 1.20484 0.86026 1.03748 1.03452 1.22690 0.97259 0.82285 0.89185 1.68035 1.07089 1.30755 1.21952 1.16124 0.89203 0.86495 0.96904 1.24927 0.92848 0.91863 0.94044 1.81181 1.08944 1.10163 1.07193 1.22281 1.03312 0.90929 1.09343 1.18420 0.87448 0.86875 0.86073 1.47485 1.08287 1.01013 1.69766 1.19596 0.71250 0.98966 0.97704 1.21508 0.92135 1.52183 0.91916 0.91853 1.24935 0.96257 0.94589 0.97964 1.69917 1.00822 1.49435 1.32666 0.86445 0.78716 0.77860 0.84539 1.19625 1.20746 1.20728 1.20902 0.93254 0.86009 0.94863 1.22249 0.99955 1.02323 0.97971 1.22216 1.00713 1.02604 0.96773 1.67892 1.07937 1.29734 1.24020 0.90000 0.89834 0.89973 0.82369 0.94187 0.93884 0.92406 0.89671 0.89789 0.92987 0.92757 0.93344 0.92407 0.90542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.31 36.01 0.37 -0.45 16 2 C 0.36 5.35 7.64 -157.36 -1.20 4.15 16 3 N -0.55 -9.15 10.27 -8.79 -0.09 -9.24 16 4 C 0.25 4.38 6.61 -84.85 -0.56 3.82 16 5 C 0.28 4.88 15.59 -22.48 -0.35 4.53 16 6 N -0.40 -7.25 18.54 41.84 0.78 -6.47 16 7 C -0.23 -4.15 9.05 -38.66 -0.35 -4.50 16 8 C 0.46 8.39 6.79 -154.81 -1.05 7.34 16 9 N -0.56 -10.58 2.49 -167.45 -0.42 -11.00 16 10 C 0.24 5.45 5.00 -5.19 -0.03 5.42 16 11 C -0.54 -13.48 9.39 -34.44 -0.32 -13.80 16 12 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 13 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 14 N -0.89 -24.01 13.29 55.43 0.74 -23.27 16 15 Si 0.90 20.36 29.54 -169.99 -5.02 15.34 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 18 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.15 2.49 3.28 -67.93 -0.22 2.27 16 20 C -0.17 -2.54 9.13 37.16 0.34 -2.20 16 21 C -0.16 -2.28 9.13 37.16 0.34 -1.94 16 22 N -0.57 -9.26 5.59 -10.00 -0.06 -9.31 16 23 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 25 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.16 3.05 6.16 -52.49 -0.32 2.73 16 27 H 0.04 0.93 6.05 -51.93 -0.31 0.62 16 28 H 0.04 1.01 7.92 -51.93 -0.41 0.60 16 29 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 30 H 0.09 1.41 7.79 -51.93 -0.40 1.01 16 31 H 0.08 1.30 5.81 -51.93 -0.30 1.00 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.93 8.14 -51.93 -0.42 0.50 16 34 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.08 1.10 6.17 -51.93 -0.32 0.78 16 LS Contribution 311.43 15.07 4.69 4.69 Total: -1.00 -26.88 311.43 -7.09 -33.97 By element: Atomic # 1 Polarization: 3.62 SS G_CDS: -4.58 Total: -0.96 kcal Atomic # 6 Polarization: 9.38 SS G_CDS: -3.13 Total: 6.25 kcal Atomic # 7 Polarization: -60.24 SS G_CDS: 0.95 Total: -59.29 kcal Atomic # 14 Polarization: 20.36 SS G_CDS: -5.02 Total: 15.34 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.88 -7.09 -33.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308157761.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.544 kcal (2) G-P(sol) polarization free energy of solvation -26.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds