Wall clock time and date at job start Mon Mar 30 2020 05:00:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31572 * 118.99490 * 2 1 4 4 C 1.33429 * 120.89620 * 180.02562 * 3 2 1 5 5 C 1.43197 * 120.52268 * 179.97438 * 4 3 2 6 6 N 4.70600 * 132.86592 * 359.97438 * 2 1 3 7 7 C 1.39298 * 118.95629 * 0.02562 * 4 3 2 8 8 C 1.39661 * 118.18811 * 359.97438 * 7 4 3 9 9 N 1.38546 * 120.50116 * 179.97438 * 8 7 4 10 10 C 1.46499 * 119.99756 * 5.00314 * 9 8 7 11 11 C 1.50701 * 109.46992 * 89.99938 * 10 9 8 12 12 H 1.07998 * 120.00129 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99861 * 179.97438 * 11 10 9 14 14 N 1.31510 * 119.99913 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 119.99734 * 180.02562 * 13 11 10 16 16 H 1.48502 * 109.47432 * 0.02562 * 15 13 11 17 17 H 1.48506 * 109.46890 * 120.00210 * 15 13 11 18 18 H 1.48501 * 109.47062 * 240.00257 * 15 13 11 19 19 C 1.46504 * 119.99862 * 185.00597 * 9 8 7 20 20 C 1.52996 * 109.46875 * 299.99723 * 19 9 8 21 21 C 1.52998 * 109.47328 * 59.99770 * 19 9 8 22 22 N 1.31828 * 118.99129 * 180.26682 * 2 1 3 23 23 H 1.08995 * 109.47126 * 90.00130 * 1 2 3 24 24 H 1.09001 * 109.47678 * 210.00581 * 1 2 3 25 25 H 1.09002 * 109.46930 * 330.00427 * 1 2 3 26 26 H 1.08001 * 120.90667 * 180.02562 * 7 4 3 27 27 H 1.09002 * 109.47391 * 329.99928 * 10 9 8 28 28 H 1.09001 * 109.46813 * 209.99985 * 10 9 8 29 29 H 0.97002 * 119.99768 * 179.97438 * 14 13 11 30 30 H 1.08997 * 109.46554 * 180.02562 * 19 9 8 31 31 H 1.09004 * 109.47604 * 60.00544 * 20 19 9 32 32 H 1.09004 * 109.47401 * 180.02562 * 20 19 9 33 33 H 1.09003 * 109.47670 * 300.00557 * 20 19 9 34 34 H 1.09005 * 109.46744 * 60.00047 * 21 19 9 35 35 H 1.08994 * 109.46866 * 179.97438 * 21 19 9 36 36 H 1.08996 * 109.47079 * 300.00309 * 21 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1448 1.1508 0.0000 4 6 3.4783 1.1951 -0.0005 5 6 4.1643 2.4521 -0.0011 6 7 4.7084 3.4493 -0.0015 7 6 4.1928 -0.0007 -0.0016 8 6 3.4745 -1.1984 -0.0015 9 7 4.1365 -2.4155 -0.0031 10 6 5.5969 -2.4550 0.1058 11 6 5.9904 -2.5287 1.5586 12 1 5.2289 -2.5449 2.3242 13 6 7.3228 -2.5765 1.9104 14 7 8.2501 -2.5572 0.9781 15 14 7.8105 -2.6685 3.7112 16 1 6.5887 -2.6774 4.5552 17 1 8.5862 -3.9120 3.9509 18 1 8.6444 -1.4900 4.0590 19 6 3.3761 -3.6628 -0.1138 20 6 2.4031 -3.7728 1.0618 21 6 2.5915 -3.6671 -1.4273 22 7 2.1459 -1.1531 -0.0054 23 1 -0.3633 0.0000 -1.0276 24 1 -0.3634 -0.8899 0.5139 25 1 -0.3633 0.8900 0.5138 26 1 5.2728 -0.0016 -0.0016 27 1 6.0190 -1.5542 -0.3398 28 1 5.9767 -3.3319 -0.4185 29 1 9.1874 -2.5905 1.2256 30 1 4.0625 -4.5093 -0.0973 31 1 1.7166 -2.9263 1.0458 32 1 1.8376 -4.7011 0.9798 33 1 2.9619 -3.7697 1.9976 34 1 3.2848 -3.5886 -2.2648 35 1 2.0262 -4.5953 -1.5097 36 1 1.9052 -2.8205 -1.4433 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308157761.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:00:43 Heat of formation + Delta-G solvation = 72.023970 kcal Electronic energy + Delta-G solvation = -19367.700912 eV Core-core repulsion = 16466.066275 eV Total energy + Delta-G solvation = -2901.634637 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.133 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.09107 -38.96774 -37.84968 -35.25203 -34.39353 -34.11474 -32.30774 -29.22933 -28.77476 -27.87516 -26.27069 -25.11637 -23.27058 -21.62076 -19.83008 -18.67897 -18.49051 -17.35766 -16.59065 -16.45228 -16.03516 -15.66230 -15.05928 -15.05541 -14.68741 -14.59360 -14.17683 -14.05661 -14.01197 -13.54212 -13.40812 -13.10803 -13.02201 -12.81771 -12.79903 -12.60303 -12.38359 -12.23784 -11.71052 -11.65174 -11.58537 -11.44741 -10.65924 -10.59600 -10.11441 -8.81881 -8.20117 -6.39138 -0.48708 0.30872 1.27182 1.35938 1.39976 1.49306 1.80522 1.97757 2.31843 2.39363 2.94709 3.05509 3.26181 3.58648 3.91177 4.14507 4.24952 4.37093 4.50133 4.52943 4.77353 4.92127 4.95087 4.97265 5.03449 5.06884 5.07424 5.13578 5.18962 5.47645 5.49859 5.58590 5.65811 5.80547 5.99633 6.09073 6.38256 6.54746 6.74734 7.25032 7.34635 8.80293 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.015133 B = 0.007846 C = 0.005907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1849.861425 B = 3567.821479 C = 4738.811629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.355 3.645 3 N -0.557 5.557 4 C 0.262 3.738 5 C 0.291 3.709 6 N -0.412 5.412 7 C -0.246 4.246 8 C 0.450 3.550 9 N -0.567 5.567 10 C 0.259 3.741 11 C -0.541 4.541 12 H 0.053 0.947 13 C 0.021 3.979 14 N -0.920 5.920 15 Si 0.953 3.047 16 H -0.270 1.270 17 H -0.275 1.275 18 H -0.282 1.282 19 C 0.145 3.855 20 C -0.157 4.157 21 C -0.152 4.152 22 N -0.559 5.559 23 H 0.104 0.896 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.141 0.859 27 H 0.026 0.974 28 H 0.029 0.971 29 H 0.268 0.732 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.028 0.972 34 H 0.040 0.960 35 H 0.085 0.915 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.453 -1.467 -2.891 14.812 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.086 3.914 3 N -0.281 5.281 4 C 0.120 3.880 5 C -0.027 4.027 6 N -0.089 5.089 7 C -0.279 4.279 8 C 0.204 3.796 9 N -0.275 5.275 10 C 0.138 3.862 11 C -0.580 4.580 12 H 0.072 0.928 13 C -0.179 4.179 14 N -0.560 5.560 15 Si 0.778 3.222 16 H -0.195 1.195 17 H -0.201 1.201 18 H -0.208 1.208 19 C 0.042 3.958 20 C -0.215 4.215 21 C -0.211 4.211 22 N -0.286 5.286 23 H 0.122 0.878 24 H 0.117 0.883 25 H 0.113 0.887 26 H 0.158 0.842 27 H 0.044 0.956 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.047 0.953 34 H 0.059 0.941 35 H 0.104 0.896 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -14.261 -0.171 -2.934 14.560 hybrid contribution 1.947 -0.392 0.951 2.202 sum -12.314 -0.563 -1.983 12.485 Atomic orbital electron populations 1.20691 0.82248 1.05158 1.05248 1.23726 0.99216 0.81359 0.87128 1.68165 1.06333 1.31530 1.22028 1.16085 0.89667 0.85909 0.96360 1.24925 0.92457 0.91695 0.93612 1.81182 1.09333 1.10712 1.07641 1.22150 1.02594 0.91731 1.11428 1.18508 0.88355 0.86412 0.86293 1.47334 1.07129 1.02324 1.70664 1.19139 0.73607 0.97453 0.95960 1.21709 0.91960 1.51308 0.93011 0.92835 1.25619 0.96418 0.94536 1.01325 1.70003 1.01067 1.50640 1.34262 0.85581 0.78261 0.77863 0.80464 1.19485 1.20062 1.20771 1.21142 0.93323 0.84524 0.96786 1.22162 0.99406 1.03824 0.96088 1.22108 1.00221 1.03905 0.94816 1.68014 1.06604 1.30270 1.23704 0.87792 0.88272 0.88687 0.84169 0.95634 0.95330 0.92318 0.90561 0.89833 0.90050 0.95291 0.94071 0.89624 0.90803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.28 10.31 71.24 0.73 -0.55 16 2 C 0.35 9.82 7.64 138.81 1.06 10.88 16 3 N -0.56 -17.45 10.27 -181.73 -1.87 -19.31 16 4 C 0.26 8.95 6.61 40.40 0.27 9.21 16 5 C 0.29 10.04 15.59 88.33 1.38 11.42 16 6 N -0.41 -14.89 18.54 19.00 0.35 -14.54 16 7 C -0.25 -9.19 9.05 22.87 0.21 -8.98 16 8 C 0.45 16.40 6.79 133.19 0.90 17.30 16 9 N -0.57 -21.67 2.49 -683.68 -1.70 -23.38 16 10 C 0.26 11.97 5.00 85.63 0.43 12.40 16 11 C -0.54 -27.66 9.39 25.60 0.24 -27.42 16 12 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 13 C 0.02 1.12 5.46 84.66 0.46 1.58 16 14 N -0.92 -50.59 13.29 21.45 0.28 -50.30 16 15 Si 0.95 42.03 29.54 68.60 2.03 44.06 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 18 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 19 C 0.14 4.59 3.28 44.99 0.15 4.73 16 20 C -0.16 -4.51 9.13 71.98 0.66 -3.85 16 21 C -0.15 -3.91 9.13 71.98 0.66 -3.25 16 22 N -0.56 -17.25 5.59 -185.54 -1.04 -18.29 16 23 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 24 H 0.10 1.44 8.14 -2.39 -0.02 1.42 16 25 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.14 5.71 6.16 -2.91 -0.02 5.69 16 27 H 0.03 1.26 6.05 -2.39 -0.01 1.24 16 28 H 0.03 1.39 7.92 -2.39 -0.02 1.37 16 29 H 0.27 13.98 8.31 -92.71 -0.77 13.21 16 30 H 0.08 2.52 7.79 -2.39 -0.02 2.50 16 31 H 0.08 2.40 5.81 -2.38 -0.01 2.39 16 32 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 33 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.04 1.10 8.14 -2.38 -0.02 1.09 16 35 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.07 1.94 6.17 -2.39 -0.01 1.93 16 Total: -1.00 -57.54 311.43 6.29 -51.24 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.09 Total: 7.04 kcal Atomic # 6 Polarization: 16.34 SS G_CDS: 7.14 Total: 23.48 kcal Atomic # 7 Polarization: -121.85 SS G_CDS: -3.97 Total: -125.82 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -57.54 6.29 -51.24 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308157761.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.268 kcal (2) G-P(sol) polarization free energy of solvation -57.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.024 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds