Wall clock time and date at job start Mon Mar 30 2020 04:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99679 * 2 1 4 4 H 1.48503 * 109.46648 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47045 * 299.99623 * 3 2 1 6 6 H 1.48498 * 109.47025 * 60.00028 * 3 2 1 7 7 C 1.37876 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99335 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00402 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47161 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46868 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99914 * 180.02562 * 11 10 9 13 13 O 1.21700 * 119.99820 * 359.97438 * 12 11 10 14 14 C 1.46433 * 120.00335 * 179.97438 * 12 11 10 15 15 C 1.34799 * 120.00243 * 186.98540 * 14 12 11 16 16 C 1.47222 * 119.99812 * 11.32053 * 15 14 12 17 17 C 1.39887 * 120.13211 * 222.73382 * 16 15 14 18 18 C 1.37920 * 119.97566 * 180.25874 * 17 16 15 19 19 C 1.38289 * 120.25072 * 359.76804 * 18 17 16 20 20 C 1.39039 * 120.27108 * 0.02562 * 19 18 17 21 21 N 1.39708 * 119.98957 * 179.97438 * 20 19 18 22 22 C 1.38599 * 120.01779 * 359.97375 * 20 19 18 23 23 H 0.96998 * 120.00147 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47149 * 60.00145 * 9 7 2 25 25 H 1.09001 * 109.47442 * 300.00149 * 9 7 2 26 26 H 1.08997 * 109.46679 * 60.00674 * 10 9 7 27 27 H 1.08997 * 109.47433 * 300.00001 * 10 9 7 28 28 H 0.97004 * 120.00133 * 0.02562 * 11 10 9 29 29 H 1.08001 * 119.99372 * 6.98344 * 14 12 11 30 30 H 1.08001 * 120.00002 * 191.33008 * 15 14 12 31 31 H 1.07992 * 120.01509 * 0.02562 * 17 16 15 32 32 H 1.07991 * 119.87605 * 179.74894 * 18 17 16 33 33 H 1.08001 * 119.86771 * 179.97438 * 19 18 17 34 34 H 0.96996 * 120.00406 * 180.02562 * 21 20 19 35 35 H 0.97002 * 119.99964 * 0.02562 * 21 20 19 36 36 H 1.08001 * 120.12357 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0015 11 7 1.5128 -4.9308 0.0020 12 6 2.1867 -6.0980 0.0024 13 8 3.4037 -6.0980 0.0019 14 6 1.4546 -7.3662 0.0035 15 6 2.1212 -8.5291 0.1458 16 6 3.5376 -8.5213 0.5472 17 6 4.4505 -9.3741 -0.0822 18 6 5.7757 -9.3680 0.3000 19 6 6.2080 -8.5177 1.3012 20 6 5.3104 -7.6627 1.9308 21 7 5.7534 -6.8064 2.9419 22 6 3.9762 -7.6596 1.5555 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8881 25 1 0.6248 -2.5563 0.8919 26 1 2.8726 -3.6039 0.8910 27 1 2.8714 -3.6048 -0.8890 28 1 0.5428 -4.9308 0.0020 29 1 0.3805 -7.3696 -0.1098 30 1 1.6162 -9.4666 -0.0347 31 1 4.1171 -10.0398 -0.8645 32 1 6.4783 -10.0299 -0.1841 33 1 7.2471 -8.5183 1.5959 34 1 5.1273 -6.2102 3.3815 35 1 6.6873 -6.8082 3.2044 36 1 3.2775 -6.9959 2.0431 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309979201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:29 Heat of formation + Delta-G solvation = 3.844208 kcal Electronic energy + Delta-G solvation = -18425.560169 eV Core-core repulsion = 15488.676284 eV Total energy + Delta-G solvation = -2936.883885 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.79766 -38.50354 -35.17592 -34.48257 -33.05554 -32.82592 -30.15431 -29.08932 -28.35090 -25.21307 -23.54026 -21.92403 -21.46000 -20.72296 -19.12967 -17.39893 -16.59030 -16.45729 -16.02078 -15.61609 -14.95753 -14.74248 -14.45279 -14.18729 -13.68001 -13.52554 -13.11374 -12.89620 -12.78023 -12.29986 -12.24568 -11.37704 -11.19403 -11.06262 -11.00326 -10.63026 -10.56701 -10.31670 -9.82365 -9.62329 -9.44487 -9.19545 -8.51407 -8.31042 -7.91497 -7.27109 -6.10147 -4.12834 0.90092 1.88532 2.13009 3.27377 3.34953 3.39932 3.70282 3.85628 4.02491 4.17332 4.41796 4.82119 5.05915 5.17278 5.26962 5.31863 5.45450 5.49864 5.76839 5.90792 6.04303 6.22271 6.27908 6.36323 6.43889 6.54048 6.69397 6.75345 6.84976 6.98562 7.07514 7.52643 7.61933 7.67480 7.88616 7.90768 8.10135 8.28648 8.76444 8.93705 9.52070 11.01520 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.027650 B = 0.004024 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.427606 B = 6957.046045 C = 7656.466914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.272 1.272 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.520 4.520 8 H 0.059 0.941 9 C 0.012 3.988 10 C 0.124 3.876 11 N -0.718 5.718 12 C 0.524 3.476 13 O -0.532 6.532 14 C -0.203 4.203 15 C -0.037 4.037 16 C -0.026 4.026 17 C -0.158 4.158 18 C -0.091 4.091 19 C -0.190 4.190 20 C 0.202 3.798 21 N -0.881 5.881 22 C -0.105 4.105 23 H 0.261 0.739 24 H 0.022 0.978 25 H 0.022 0.978 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.396 0.604 29 H 0.130 0.870 30 H 0.133 0.867 31 H 0.114 0.886 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.397 0.603 35 H 0.394 0.606 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.489 -18.602 3.265 19.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.196 1.196 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.559 4.559 8 H 0.077 0.923 9 C -0.026 4.026 10 C 0.001 3.999 11 N -0.367 5.367 12 C 0.311 3.689 13 O -0.411 6.411 14 C -0.224 4.224 15 C -0.056 4.056 16 C -0.027 4.027 17 C -0.178 4.178 18 C -0.110 4.110 19 C -0.213 4.213 20 C 0.099 3.901 21 N -0.421 5.421 22 C -0.127 4.127 23 H 0.071 0.929 24 H 0.040 0.960 25 H 0.040 0.960 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.230 0.770 29 H 0.148 0.852 30 H 0.151 0.849 31 H 0.132 0.868 32 H 0.134 0.866 33 H 0.130 0.870 34 H 0.225 0.775 35 H 0.221 0.779 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 6.196 -18.457 3.226 19.735 hybrid contribution -0.087 1.381 0.126 1.389 sum 6.109 -17.077 3.352 18.443 Atomic orbital electron populations 1.69968 1.06081 1.26747 1.50523 1.24998 0.94885 0.99401 0.95012 0.86469 0.80167 0.83380 0.77633 1.19606 1.20904 1.20933 1.21091 0.93246 0.90422 1.51144 0.92271 1.19330 0.94228 0.91207 0.97801 1.21664 0.95953 0.81651 1.00588 1.46337 1.10410 1.06631 1.73342 1.18488 0.87929 0.84520 0.77938 1.90896 1.13141 1.87381 1.49691 1.23144 1.00116 0.92944 1.06205 1.22343 0.92925 0.97453 0.92916 1.18558 0.92665 0.95817 0.95610 1.20865 0.93383 1.01543 1.01994 1.20605 0.95464 0.98305 0.96606 1.20548 0.98448 1.00916 1.01379 1.17571 0.92753 0.90553 0.89236 1.42384 1.12472 1.45389 1.41830 1.20474 0.93905 0.98798 0.99555 0.92907 0.95965 0.95995 0.92779 0.92686 0.77029 0.85183 0.84927 0.86770 0.86647 0.86969 0.77532 0.77904 0.87029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.18 13.29 55.43 0.74 -25.45 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 7 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.29 5.09 -27.88 -0.14 0.15 16 10 C 0.12 2.66 5.61 -4.04 -0.02 2.64 16 11 N -0.72 -12.64 5.55 -61.70 -0.34 -12.98 16 12 C 0.52 8.95 6.74 -12.96 -0.09 8.87 16 13 O -0.53 -10.71 12.12 5.19 0.06 -10.65 16 14 C -0.20 -2.60 9.90 -37.50 -0.37 -2.98 16 15 C -0.04 -0.44 9.81 -37.15 -0.36 -0.80 16 16 C -0.03 -0.36 4.58 -105.08 -0.48 -0.84 16 17 C -0.16 -2.05 9.79 -39.08 -0.38 -2.43 16 18 C -0.09 -1.14 10.02 -39.68 -0.40 -1.54 16 19 C -0.19 -2.49 9.89 -39.27 -0.39 -2.88 16 20 C 0.20 2.88 6.75 -83.84 -0.57 2.32 16 21 N -0.88 -10.30 9.09 32.38 0.29 -10.00 16 22 C -0.10 -1.60 6.42 -38.90 -0.25 -1.85 16 23 H 0.26 7.20 8.31 -40.82 -0.34 6.87 16 24 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 25 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.05 1.25 8.14 -51.93 -0.42 0.82 16 28 H 0.40 6.05 8.45 -40.82 -0.35 5.71 16 29 H 0.13 1.26 8.06 -52.49 -0.42 0.84 16 30 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 31 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 32 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 33 H 0.11 1.22 8.06 -52.49 -0.42 0.80 16 34 H 0.40 4.42 8.84 -40.82 -0.36 4.06 16 35 H 0.39 3.66 8.84 -40.82 -0.36 3.30 16 36 H 0.11 1.78 6.92 -52.49 -0.36 1.42 16 LS Contribution 312.02 15.07 4.70 4.70 Total: -1.00 -32.65 312.02 -8.21 -40.85 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: -4.78 Total: 9.73 kcal Atomic # 6 Polarization: -8.75 SS G_CDS: -3.86 Total: -12.61 kcal Atomic # 7 Polarization: -49.12 SS G_CDS: 0.69 Total: -48.43 kcal Atomic # 8 Polarization: -10.71 SS G_CDS: 0.06 Total: -10.65 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -32.65 -8.21 -40.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309979201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.699 kcal (2) G-P(sol) polarization free energy of solvation -32.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds