Wall clock time and date at job start Mon Mar 30 2020 04:09:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31523 * 1 3 3 Si 1.86797 * 119.99679 * 2 1 4 4 H 1.48503 * 109.46648 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47045 * 299.99623 * 3 2 1 6 6 H 1.48498 * 109.47025 * 60.00028 * 3 2 1 7 7 C 1.37876 * 119.99751 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99335 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00402 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47161 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.46868 * 180.02562 * 10 9 7 12 12 C 1.34774 * 119.99914 * 180.02562 * 11 10 9 13 13 O 1.21700 * 119.99820 * 359.97438 * 12 11 10 14 14 C 1.46433 * 120.00335 * 179.97438 * 12 11 10 15 15 C 1.34799 * 120.00243 * 186.98540 * 14 12 11 16 16 C 1.47222 * 119.99812 * 11.32053 * 15 14 12 17 17 C 1.39887 * 120.13211 * 222.73382 * 16 15 14 18 18 C 1.37920 * 119.97566 * 180.25874 * 17 16 15 19 19 C 1.38289 * 120.25072 * 359.76804 * 18 17 16 20 20 C 1.39039 * 120.27108 * 0.02562 * 19 18 17 21 21 N 1.39708 * 119.98957 * 179.97438 * 20 19 18 22 22 C 1.38599 * 120.01779 * 359.97375 * 20 19 18 23 23 H 0.96998 * 120.00147 * 0.02562 * 1 2 3 24 24 H 1.09006 * 109.47149 * 60.00145 * 9 7 2 25 25 H 1.09001 * 109.47442 * 300.00149 * 9 7 2 26 26 H 1.08997 * 109.46679 * 60.00674 * 10 9 7 27 27 H 1.08997 * 109.47433 * 300.00001 * 10 9 7 28 28 H 0.97004 * 120.00133 * 0.02562 * 11 10 9 29 29 H 1.08001 * 119.99372 * 6.98344 * 14 12 11 30 30 H 1.08001 * 120.00002 * 191.33008 * 15 14 12 31 31 H 1.07992 * 120.01509 * 0.02562 * 17 16 15 32 32 H 1.07991 * 119.87605 * 179.74894 * 18 17 16 33 33 H 1.08001 * 119.86771 * 179.97438 * 19 18 17 34 34 H 0.96996 * 120.00406 * 180.02562 * 21 20 19 35 35 H 0.97002 * 119.99964 * 0.02562 * 21 20 19 36 36 H 1.08001 * 120.12357 * 180.02562 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6621 0.0015 11 7 1.5128 -4.9308 0.0020 12 6 2.1867 -6.0980 0.0024 13 8 3.4037 -6.0980 0.0019 14 6 1.4546 -7.3662 0.0035 15 6 2.1212 -8.5291 0.1458 16 6 3.5376 -8.5213 0.5472 17 6 4.4505 -9.3741 -0.0822 18 6 5.7757 -9.3680 0.3000 19 6 6.2080 -8.5177 1.3012 20 6 5.3104 -7.6627 1.9308 21 7 5.7534 -6.8064 2.9419 22 6 3.9762 -7.6596 1.5555 23 1 -0.4850 0.8400 -0.0004 24 1 0.6241 -2.5575 -0.8881 25 1 0.6248 -2.5563 0.8919 26 1 2.8726 -3.6039 0.8910 27 1 2.8714 -3.6048 -0.8890 28 1 0.5428 -4.9308 0.0020 29 1 0.3805 -7.3696 -0.1098 30 1 1.6162 -9.4666 -0.0347 31 1 4.1171 -10.0398 -0.8645 32 1 6.4783 -10.0299 -0.1841 33 1 7.2471 -8.5183 1.5959 34 1 5.1273 -6.2102 3.3815 35 1 6.6873 -6.8082 3.2044 36 1 3.2775 -6.9959 2.0431 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309979201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:29 Heat of formation + Delta-G solvation = -18.492220 kcal Electronic energy + Delta-G solvation = -18426.528749 eV Core-core repulsion = 15488.676284 eV Total energy + Delta-G solvation = -2937.852465 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.00976 -39.66229 -36.69414 -35.67426 -34.78252 -34.07704 -31.79074 -30.37105 -29.36116 -27.01625 -24.84975 -23.19251 -22.74798 -22.22906 -20.35870 -18.69761 -18.32082 -17.59138 -17.20677 -16.77334 -16.56173 -16.23974 -16.12634 -15.33235 -14.90271 -14.71613 -14.47078 -14.22646 -14.14279 -13.82093 -13.34580 -13.20224 -12.95455 -12.53642 -12.33469 -12.24769 -12.00472 -11.65414 -11.53376 -11.43503 -10.79939 -10.62529 -10.59220 -9.88535 -8.98679 -8.27514 -8.25843 -6.36513 -0.12461 0.87654 1.10169 1.39210 1.40117 1.53263 2.33447 2.45185 2.54705 3.08468 3.08669 3.17656 3.87562 4.02194 4.15709 4.35745 4.48406 4.49300 4.55736 4.59230 4.78846 4.84332 4.96739 5.09426 5.26798 5.32442 5.37793 5.52774 5.54307 5.56844 5.72301 5.78705 5.84424 6.12893 6.15172 6.68957 6.75118 6.77789 7.03926 7.32987 7.42249 8.86173 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.027650 B = 0.004024 C = 0.003656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.427606 B = 6957.046045 C = 7656.466914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.008 3.992 3 Si 0.965 3.035 4 H -0.267 1.267 5 H -0.276 1.276 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.056 0.944 9 C 0.023 3.977 10 C 0.146 3.854 11 N -0.716 5.716 12 C 0.519 3.481 13 O -0.566 6.566 14 C -0.215 4.215 15 C -0.019 4.019 16 C -0.046 4.046 17 C -0.166 4.166 18 C -0.095 4.095 19 C -0.202 4.202 20 C 0.184 3.816 21 N -0.878 5.878 22 C -0.131 4.131 23 H 0.266 0.734 24 H 0.007 0.993 25 H 0.008 0.992 26 H 0.042 0.958 27 H 0.040 0.960 28 H 0.408 0.592 29 H 0.166 0.834 30 H 0.178 0.822 31 H 0.140 0.860 32 H 0.144 0.856 33 H 0.131 0.869 34 H 0.397 0.603 35 H 0.404 0.596 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.851 -19.850 2.821 20.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.789 3.211 4 H -0.191 1.191 5 H -0.201 1.201 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.074 0.926 9 C -0.015 4.015 10 C 0.022 3.978 11 N -0.367 5.367 12 C 0.309 3.691 13 O -0.447 6.447 14 C -0.235 4.235 15 C -0.038 4.038 16 C -0.047 4.047 17 C -0.186 4.186 18 C -0.113 4.113 19 C -0.225 4.225 20 C 0.080 3.920 21 N -0.418 5.418 22 C -0.154 4.154 23 H 0.075 0.925 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.060 0.940 27 H 0.058 0.942 28 H 0.244 0.756 29 H 0.183 0.817 30 H 0.195 0.805 31 H 0.157 0.843 32 H 0.161 0.839 33 H 0.149 0.851 34 H 0.225 0.775 35 H 0.233 0.767 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.551 -19.725 2.792 20.971 hybrid contribution -0.144 1.689 0.284 1.719 sum 6.407 -18.036 3.076 19.386 Atomic orbital electron populations 1.70065 1.07521 1.27962 1.51030 1.25866 0.95794 1.03064 0.94368 0.85401 0.78894 0.78783 0.78000 1.19102 1.20125 1.20071 1.21481 0.93457 0.92024 1.51520 0.92572 1.19132 0.94224 0.91848 0.96257 1.21098 0.94867 0.82569 0.99247 1.46160 1.10905 1.05641 1.74006 1.19237 0.87795 0.85466 0.76555 1.90885 1.14849 1.87925 1.51034 1.23157 1.01568 0.90628 1.08197 1.22799 0.91827 0.98873 0.90309 1.18956 0.94350 0.95830 0.95552 1.21231 0.93500 1.01549 1.02343 1.21031 0.96040 0.98140 0.96097 1.20878 0.99267 1.00771 1.01552 1.17858 0.92910 0.91286 0.89946 1.42378 1.13133 1.44963 1.41340 1.20504 0.94252 0.99659 1.00946 0.92501 0.97436 0.97337 0.93956 0.94206 0.75616 0.81657 0.80530 0.84257 0.83858 0.85108 0.77526 0.76680 0.88914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.62 13.29 21.45 0.28 -54.33 16 2 C 0.01 0.44 5.46 84.65 0.46 0.91 16 3 Si 0.96 43.95 29.54 68.60 2.03 45.97 16 4 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 5 H -0.28 -12.18 7.11 99.48 0.71 -11.48 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 7 C -0.55 -31.00 9.11 25.60 0.23 -30.76 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.17 5.09 29.85 0.15 1.32 16 10 C 0.15 6.47 5.61 86.38 0.48 6.95 16 11 N -0.72 -25.46 5.55 -467.33 -2.59 -28.05 16 12 C 0.52 17.68 6.74 86.38 0.58 18.26 16 13 O -0.57 -23.13 12.12 -4.35 -0.05 -23.18 16 14 C -0.22 -5.09 9.90 23.62 0.23 -4.85 16 15 C -0.02 -0.40 9.81 23.84 0.23 -0.16 16 16 C -0.05 -1.25 4.58 -20.16 -0.09 -1.34 16 17 C -0.17 -3.96 9.79 22.59 0.22 -3.74 16 18 C -0.09 -2.17 10.02 22.21 0.22 -1.95 16 19 C -0.20 -5.06 9.89 22.47 0.22 -4.84 16 20 C 0.18 5.25 6.75 38.16 0.26 5.51 16 21 N -0.88 -20.80 9.09 -51.46 -0.47 -21.27 16 22 C -0.13 -4.04 6.42 22.71 0.15 -3.89 16 23 H 0.27 14.67 8.31 -92.71 -0.77 13.90 16 24 H 0.01 0.39 8.14 -2.38 -0.02 0.37 16 25 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 26 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 27 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 28 H 0.41 12.41 8.45 -92.71 -0.78 11.63 16 29 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 30 H 0.18 2.14 8.06 -2.91 -0.02 2.12 16 31 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 32 H 0.14 2.38 8.06 -2.92 -0.02 2.36 16 33 H 0.13 2.65 8.06 -2.91 -0.02 2.62 16 34 H 0.40 9.22 8.84 -92.71 -0.82 8.40 16 35 H 0.40 7.46 8.84 -92.71 -0.82 6.64 16 36 H 0.09 3.10 6.92 -2.91 -0.02 3.08 16 Total: -1.00 -71.15 312.02 1.25 -69.91 By element: Atomic # 1 Polarization: 30.85 SS G_CDS: -1.31 Total: 29.54 kcal Atomic # 6 Polarization: -21.94 SS G_CDS: 3.36 Total: -18.58 kcal Atomic # 7 Polarization: -100.88 SS G_CDS: -2.78 Total: -103.66 kcal Atomic # 8 Polarization: -23.13 SS G_CDS: -0.05 Total: -23.18 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.97 kcal Total: -71.15 1.25 -69.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309979201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.416 kcal (2) G-P(sol) polarization free energy of solvation -71.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.908 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds