Wall clock time and date at job start Mon Mar 30 2020 04:56:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46497 * 120.00396 * 2 1 4 4 C 1.50707 * 109.46963 * 270.00255 * 3 2 1 5 5 H 1.07998 * 119.99864 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00010 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00255 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00017 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47114 * 89.99976 * 8 6 4 10 10 H 1.48509 * 109.46783 * 209.99734 * 8 6 4 11 11 H 1.48496 * 109.47158 * 329.99479 * 8 6 4 12 12 C 1.34779 * 120.00060 * 180.02562 * 2 1 3 13 13 O 1.21726 * 120.00216 * 180.02562 * 12 2 1 14 14 C 1.46196 * 119.99784 * 359.97438 * 12 2 1 15 15 C 1.35045 * 120.00092 * 187.35143 * 14 12 2 16 16 C 1.46919 * 119.99924 * 10.26224 * 15 14 12 17 17 C 1.40034 * 120.08985 * 43.92319 * 16 15 14 18 18 C 1.37103 * 119.90116 * 180.22937 * 17 16 15 19 19 C 1.39235 * 120.09555 * 359.47107 * 18 17 16 20 20 N 1.39119 * 119.90873 * 180.27832 * 19 18 17 21 21 C 1.39246 * 120.18826 * 0.30249 * 19 18 17 22 22 C 1.37091 * 120.09769 * 359.95226 * 21 19 18 23 23 H 1.09000 * 109.47108 * 270.00463 * 1 2 3 24 24 H 1.09005 * 109.46798 * 30.00304 * 1 2 3 25 25 H 1.08998 * 109.47024 * 149.99921 * 1 2 3 26 26 H 1.09004 * 109.46999 * 29.99337 * 3 2 1 27 27 H 1.08994 * 109.47959 * 150.00094 * 3 2 1 28 28 H 0.96993 * 120.00414 * 179.97438 * 7 6 4 29 29 H 1.07998 * 120.00257 * 7.35459 * 14 12 2 30 30 H 1.07997 * 119.99796 * 190.26638 * 15 14 12 31 31 H 1.07999 * 120.05034 * 359.97109 * 17 16 15 32 32 H 1.08004 * 119.95210 * 179.75034 * 18 17 16 33 33 H 0.96999 * 119.99576 * 359.97438 * 20 19 18 34 34 H 0.96995 * 120.00429 * 180.02562 * 20 19 18 35 35 H 1.08006 * 119.95017 * 179.97438 * 21 19 18 36 36 H 1.07999 * 120.05511 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0980 1.0957 -2.2417 6 6 3.1260 2.8778 -1.6729 7 7 3.5526 3.6185 -0.6733 8 14 3.4379 3.4167 -3.4341 9 1 2.3078 4.2590 -3.9015 10 1 4.6980 4.2002 -3.4961 11 1 3.5561 2.2194 -4.3045 12 6 2.1388 -1.1672 -0.0005 13 8 3.3561 -1.1672 -0.0001 14 6 1.4078 -2.4333 -0.0005 15 6 2.0747 -3.5981 0.1486 16 6 3.4923 -3.5887 0.5344 17 6 3.9378 -2.7343 1.5505 18 6 5.2624 -2.7253 1.9042 19 6 6.1622 -3.5720 1.2622 20 7 7.5044 -3.5638 1.6281 21 6 5.7226 -4.4265 0.2545 22 6 4.4008 -4.4382 -0.1090 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5137 27 1 3.1499 1.1384 0.5138 28 1 4.0294 4.4443 -0.8505 29 1 0.3345 -2.4371 -0.1198 30 1 1.5660 -4.5364 -0.0158 31 1 3.2397 -2.0803 2.0520 32 1 5.6076 -2.0637 2.6850 33 1 7.8122 -2.9685 2.3294 34 1 8.1325 -4.1528 1.1816 35 1 6.4240 -5.0814 -0.2412 36 1 4.0605 -5.1016 -0.8903 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309979935.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:25 Heat of formation + Delta-G solvation = 22.715761 kcal Electronic energy + Delta-G solvation = -19003.884255 eV Core-core repulsion = 16067.818702 eV Total energy + Delta-G solvation = -2936.065553 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.49430 -38.35289 -35.23828 -34.27439 -32.66300 -32.07258 -30.55418 -28.29189 -27.24415 -25.66548 -23.74056 -22.45965 -21.92588 -20.28001 -17.86707 -17.04980 -16.69393 -16.41992 -16.36477 -15.33059 -14.58362 -14.34938 -14.09625 -13.65314 -13.36743 -13.15280 -13.02986 -12.70167 -12.36254 -12.07451 -12.05758 -11.68667 -11.20663 -11.08594 -10.88540 -10.69104 -10.53055 -10.37371 -10.07042 -9.57833 -8.98782 -8.84015 -8.38834 -8.27782 -7.45356 -6.88706 -5.99382 -4.03593 1.30738 1.99343 2.45680 3.32850 3.39228 3.44690 4.05833 4.09792 4.24654 4.38468 4.50336 5.17374 5.21054 5.32534 5.35474 5.39538 5.60512 5.77802 5.86270 5.97309 6.01921 6.17847 6.26751 6.41122 6.44848 6.53583 6.74477 6.91318 7.11635 7.22018 7.24450 7.51883 7.64625 7.75021 7.90784 7.98118 8.29797 8.55207 8.97316 9.25834 9.61546 11.08461 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018674 B = 0.005905 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.034629 B = 4740.726345 C = 5550.217919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.599 5.599 3 C 0.246 3.754 4 C -0.522 4.522 5 H 0.056 0.944 6 C 0.060 3.940 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.527 3.473 13 O -0.526 6.526 14 C -0.215 4.215 15 C -0.031 4.031 16 C -0.127 4.127 17 C 0.023 3.977 18 C -0.207 4.207 19 C 0.224 3.776 20 N -0.879 5.879 21 C -0.219 4.219 22 C -0.053 4.053 23 H 0.043 0.957 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.030 0.970 27 H 0.044 0.956 28 H 0.262 0.738 29 H 0.125 0.875 30 H 0.124 0.876 31 H 0.111 0.889 32 H 0.114 0.886 33 H 0.396 0.604 34 H 0.394 0.606 35 H 0.112 0.888 36 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.985 -15.357 4.893 16.148 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.330 5.330 3 C 0.126 3.874 4 C -0.561 4.561 5 H 0.075 0.925 6 C -0.141 4.141 7 N -0.536 5.536 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.316 3.684 13 O -0.405 6.405 14 C -0.236 4.236 15 C -0.051 4.051 16 C -0.129 4.129 17 C 0.004 3.996 18 C -0.230 4.230 19 C 0.120 3.880 20 N -0.417 5.417 21 C -0.242 4.242 22 C -0.072 4.072 23 H 0.061 0.939 24 H 0.090 0.910 25 H 0.077 0.923 26 H 0.048 0.952 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.223 0.777 34 H 0.221 0.779 35 H 0.130 0.870 36 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.297 -15.123 4.926 15.908 hybrid contribution 0.389 0.639 -1.091 1.323 sum 0.092 -14.485 3.835 14.984 Atomic orbital electron populations 1.21652 0.81731 1.02413 1.00268 1.48150 1.06032 1.07973 1.70864 1.19250 0.92527 0.78221 0.97364 1.21451 1.36212 1.06054 0.92387 0.92542 1.24929 0.95435 0.96447 0.97335 1.69931 1.38647 1.14327 1.30663 0.86516 0.77629 0.78559 0.84846 1.20660 1.21129 1.19918 1.18242 0.87751 0.84094 0.78357 1.90846 1.13114 1.86686 1.49826 1.23262 0.99909 0.93511 1.06942 1.22178 0.92961 0.96888 0.93044 1.18561 0.93138 1.00841 1.00334 1.20653 0.94759 0.91182 0.92965 1.20236 0.93594 1.03770 1.05394 1.17833 0.84256 0.93324 0.92608 1.42344 1.06492 1.48090 1.44797 1.20125 0.96504 1.05028 1.02504 1.20677 0.92505 0.96715 0.97291 0.93884 0.91043 0.92290 0.95210 0.93825 0.92817 0.85691 0.85861 0.87049 0.86820 0.77672 0.77891 0.87020 0.86729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.38 10.20 59.84 0.61 1.99 16 2 N -0.60 -13.18 2.86 -184.70 -0.53 -13.71 16 3 C 0.25 6.60 5.16 -5.19 -0.03 6.58 16 4 C -0.52 -15.24 9.39 -34.44 -0.32 -15.57 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 7 N -0.90 -27.18 13.29 55.43 0.74 -26.44 16 8 Si 0.90 22.44 29.54 -169.99 -5.02 17.42 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 10 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.27 -6.88 7.11 56.52 0.40 -6.48 16 12 C 0.53 11.36 6.63 -13.06 -0.09 11.27 16 13 O -0.53 -13.21 11.69 5.17 0.06 -13.15 16 14 C -0.22 -3.49 9.15 -37.52 -0.34 -3.84 16 15 C -0.03 -0.45 9.80 -37.20 -0.36 -0.82 16 16 C -0.13 -2.13 4.55 -105.04 -0.48 -2.61 16 17 C 0.02 0.42 6.54 -39.32 -0.26 0.16 16 18 C -0.21 -3.49 9.85 -39.62 -0.39 -3.88 16 19 C 0.22 3.39 6.75 -83.81 -0.57 2.83 16 20 N -0.88 -9.97 9.06 32.43 0.29 -9.67 16 21 C -0.22 -3.23 9.85 -39.62 -0.39 -3.62 16 22 C -0.05 -0.81 9.76 -39.33 -0.38 -1.19 16 23 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.07 1.21 8.07 -51.93 -0.42 0.79 16 25 H 0.06 0.80 6.01 -51.93 -0.31 0.49 16 26 H 0.03 0.81 8.07 -51.93 -0.42 0.39 16 27 H 0.04 1.31 7.42 -51.93 -0.39 0.93 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.13 1.62 6.14 -52.49 -0.32 1.30 16 30 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 31 H 0.11 2.06 6.99 -52.49 -0.37 1.70 16 32 H 0.11 1.76 8.06 -52.48 -0.42 1.34 16 33 H 0.40 3.88 8.83 -40.82 -0.36 3.52 16 34 H 0.39 3.55 8.83 -40.82 -0.36 3.19 16 35 H 0.11 1.36 8.06 -52.48 -0.42 0.94 16 36 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 LS Contribution 307.71 15.07 4.64 4.64 Total: -1.00 -34.82 307.71 -7.52 -42.34 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -4.61 Total: 5.60 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -3.10 Total: -7.03 kcal Atomic # 7 Polarization: -50.32 SS G_CDS: 0.50 Total: -49.82 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: 0.06 Total: -13.15 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -5.02 Total: 17.42 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.82 -7.52 -42.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309979935.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.058 kcal (2) G-P(sol) polarization free energy of solvation -34.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.343 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds