Wall clock time and date at job start Mon Mar 30 2020 04:56:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46497 * 120.00396 * 2 1 4 4 C 1.50707 * 109.46963 * 270.00255 * 3 2 1 5 5 H 1.07998 * 119.99864 * 359.97438 * 4 3 2 6 6 C 1.37875 * 120.00010 * 179.97438 * 4 3 2 7 7 N 1.31517 * 120.00255 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 120.00017 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47114 * 89.99976 * 8 6 4 10 10 H 1.48509 * 109.46783 * 209.99734 * 8 6 4 11 11 H 1.48496 * 109.47158 * 329.99479 * 8 6 4 12 12 C 1.34779 * 120.00060 * 180.02562 * 2 1 3 13 13 O 1.21726 * 120.00216 * 180.02562 * 12 2 1 14 14 C 1.46196 * 119.99784 * 359.97438 * 12 2 1 15 15 C 1.35045 * 120.00092 * 187.35143 * 14 12 2 16 16 C 1.46919 * 119.99924 * 10.26224 * 15 14 12 17 17 C 1.40034 * 120.08985 * 43.92319 * 16 15 14 18 18 C 1.37103 * 119.90116 * 180.22937 * 17 16 15 19 19 C 1.39235 * 120.09555 * 359.47107 * 18 17 16 20 20 N 1.39119 * 119.90873 * 180.27832 * 19 18 17 21 21 C 1.39246 * 120.18826 * 0.30249 * 19 18 17 22 22 C 1.37091 * 120.09769 * 359.95226 * 21 19 18 23 23 H 1.09000 * 109.47108 * 270.00463 * 1 2 3 24 24 H 1.09005 * 109.46798 * 30.00304 * 1 2 3 25 25 H 1.08998 * 109.47024 * 149.99921 * 1 2 3 26 26 H 1.09004 * 109.46999 * 29.99337 * 3 2 1 27 27 H 1.08994 * 109.47959 * 150.00094 * 3 2 1 28 28 H 0.96993 * 120.00414 * 179.97438 * 7 6 4 29 29 H 1.07998 * 120.00257 * 7.35459 * 14 12 2 30 30 H 1.07997 * 119.99796 * 190.26638 * 15 14 12 31 31 H 1.07999 * 120.05034 * 359.97109 * 17 16 15 32 32 H 1.08004 * 119.95210 * 179.75034 * 18 17 16 33 33 H 0.96999 * 119.99576 * 359.97438 * 20 19 18 34 34 H 0.96995 * 120.00429 * 180.02562 * 20 19 18 35 35 H 1.08006 * 119.95017 * 179.97438 * 21 19 18 36 36 H 1.07999 * 120.05511 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.4486 1.7037 -1.4209 5 1 2.0980 1.0957 -2.2417 6 6 3.1260 2.8778 -1.6729 7 7 3.5526 3.6185 -0.6733 8 14 3.4379 3.4167 -3.4341 9 1 2.3078 4.2590 -3.9015 10 1 4.6980 4.2002 -3.4961 11 1 3.5561 2.2194 -4.3045 12 6 2.1388 -1.1672 -0.0005 13 8 3.3561 -1.1672 -0.0001 14 6 1.4078 -2.4333 -0.0005 15 6 2.0747 -3.5981 0.1486 16 6 3.4923 -3.5887 0.5344 17 6 3.9378 -2.7343 1.5505 18 6 5.2624 -2.7253 1.9042 19 6 6.1622 -3.5720 1.2622 20 7 7.5044 -3.5638 1.6281 21 6 5.7226 -4.4265 0.2545 22 6 4.4008 -4.4382 -0.1090 23 1 -0.3633 0.0001 1.0277 24 1 -0.3633 0.8900 -0.5139 25 1 -0.3633 -0.8900 -0.5138 26 1 1.6084 2.0284 0.5137 27 1 3.1499 1.1384 0.5138 28 1 4.0294 4.4443 -0.8505 29 1 0.3345 -2.4371 -0.1198 30 1 1.5660 -4.5364 -0.0158 31 1 3.2397 -2.0803 2.0520 32 1 5.6076 -2.0637 2.6850 33 1 7.8122 -2.9685 2.3294 34 1 8.1325 -4.1528 1.1816 35 1 6.4240 -5.0814 -0.2412 36 1 4.0605 -5.1016 -0.8903 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309979935.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:24 Heat of formation + Delta-G solvation = -1.170244 kcal Electronic energy + Delta-G solvation = -19004.920029 eV Core-core repulsion = 16067.818702 eV Total energy + Delta-G solvation = -2937.101328 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.91974 -39.73095 -36.75354 -35.69858 -34.73099 -33.36958 -31.76478 -30.09708 -28.64116 -27.22912 -25.53699 -23.82111 -23.27698 -21.71371 -19.31164 -18.70304 -18.31979 -17.86246 -17.56390 -17.04145 -16.31642 -15.99601 -15.50666 -15.00966 -14.70041 -14.43792 -14.36673 -14.08093 -13.91236 -13.71452 -13.48758 -13.36645 -13.05523 -12.80426 -12.53638 -12.32873 -12.20910 -11.88895 -11.71309 -11.50461 -10.64727 -10.40475 -10.14781 -9.65540 -9.19668 -8.22170 -8.04388 -6.37258 0.06697 0.76349 1.22749 1.34120 1.37325 1.47916 2.32570 2.58705 2.68175 3.05776 3.06320 3.18540 3.98475 4.05092 4.09126 4.20121 4.43595 4.57327 4.64852 4.75720 4.81056 4.96385 5.01537 5.05092 5.20638 5.22351 5.29639 5.41644 5.56711 5.58566 5.71787 5.89357 5.97734 6.07987 6.11074 6.65484 6.71558 6.92114 7.03421 7.29622 7.64875 8.84347 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018674 B = 0.005905 C = 0.005044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.034629 B = 4740.726345 C = 5550.217919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.611 5.611 3 C 0.262 3.738 4 C -0.539 4.539 5 H 0.050 0.950 6 C 0.006 3.994 7 N -0.930 5.930 8 Si 0.967 3.033 9 H -0.261 1.261 10 H -0.280 1.280 11 H -0.275 1.275 12 C 0.515 3.485 13 O -0.575 6.575 14 C -0.233 4.233 15 C -0.005 4.005 16 C -0.155 4.155 17 C 0.004 3.996 18 C -0.236 4.236 19 C 0.221 3.779 20 N -0.866 5.866 21 C -0.226 4.226 22 C -0.054 4.054 23 H 0.066 0.934 24 H 0.062 0.938 25 H 0.096 0.904 26 H 0.019 0.981 27 H -0.004 1.004 28 H 0.267 0.733 29 H 0.164 0.836 30 H 0.175 0.825 31 H 0.088 0.912 32 H 0.111 0.889 33 H 0.403 0.597 34 H 0.408 0.592 35 H 0.141 0.859 36 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.700 -17.506 3.212 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.342 5.342 3 C 0.141 3.859 4 C -0.578 4.578 5 H 0.068 0.932 6 C -0.192 4.192 7 N -0.570 5.570 8 Si 0.792 3.208 9 H -0.186 1.186 10 H -0.205 1.205 11 H -0.199 1.199 12 C 0.307 3.693 13 O -0.457 6.457 14 C -0.253 4.253 15 C -0.024 4.024 16 C -0.158 4.158 17 C -0.015 4.015 18 C -0.259 4.259 19 C 0.115 3.885 20 N -0.405 5.405 21 C -0.249 4.249 22 C -0.073 4.073 23 H 0.085 0.915 24 H 0.080 0.920 25 H 0.114 0.886 26 H 0.037 0.963 27 H 0.014 0.986 28 H 0.075 0.925 29 H 0.182 0.818 30 H 0.192 0.808 31 H 0.107 0.893 32 H 0.129 0.871 33 H 0.231 0.769 34 H 0.238 0.762 35 H 0.159 0.841 36 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -1.032 -17.292 3.260 17.627 hybrid contribution 0.723 1.244 -0.473 1.514 sum -0.309 -16.048 2.787 16.291 Atomic orbital electron populations 1.21921 0.78316 1.03783 1.02266 1.48174 1.08206 1.06510 1.71318 1.18667 0.90945 0.80519 0.95792 1.21701 1.36651 1.06373 0.93064 0.93177 1.25869 0.94935 0.96437 1.02002 1.70055 1.39115 1.14781 1.33012 0.85422 0.78164 0.78159 0.79103 1.18598 1.20542 1.19950 1.19209 0.87646 0.85519 0.76949 1.90818 1.15450 1.87552 1.51902 1.23202 1.01403 0.90831 1.09867 1.22685 0.91831 0.98355 0.89553 1.18913 0.94998 1.01284 1.00572 1.20637 0.94951 0.91712 0.94223 1.20390 0.94047 1.04996 1.06436 1.17972 0.85350 0.92795 0.92424 1.42308 1.05397 1.48083 1.44670 1.20537 0.97179 1.05025 1.02171 1.21089 0.92507 0.96336 0.97341 0.91527 0.91960 0.88586 0.96340 0.98552 0.92453 0.81828 0.80809 0.89333 0.87102 0.76851 0.76237 0.84147 0.83631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.53 10.20 127.77 1.30 3.83 16 2 N -0.61 -27.49 2.86 -856.45 -2.45 -29.94 16 3 C 0.26 14.85 5.16 85.64 0.44 15.29 16 4 C -0.54 -32.42 9.39 25.60 0.24 -32.18 16 5 H 0.05 3.00 7.81 -2.91 -0.02 2.98 16 6 C 0.01 0.37 5.46 84.65 0.46 0.83 16 7 N -0.93 -57.94 13.29 21.45 0.28 -57.66 16 8 Si 0.97 46.38 29.54 68.60 2.03 48.40 16 9 H -0.26 -11.66 7.11 99.48 0.71 -10.96 16 10 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 12 C 0.51 22.58 6.63 86.31 0.57 23.15 16 13 O -0.57 -30.24 11.69 -4.43 -0.05 -30.29 16 14 C -0.23 -7.07 9.15 23.60 0.22 -6.86 16 15 C 0.00 -0.13 9.80 23.81 0.23 0.10 16 16 C -0.16 -5.08 4.55 -20.13 -0.09 -5.17 16 17 C 0.00 0.15 6.54 22.44 0.15 0.30 16 18 C -0.24 -8.31 9.85 22.24 0.22 -8.09 16 19 C 0.22 6.59 6.75 38.47 0.26 6.85 16 20 N -0.87 -18.69 9.06 -51.31 -0.46 -19.16 16 21 C -0.23 -6.24 9.85 22.24 0.22 -6.02 16 22 C -0.05 -1.53 9.76 22.44 0.22 -1.31 16 23 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.06 2.08 8.07 -2.38 -0.02 2.06 16 25 H 0.10 2.32 6.01 -2.39 -0.01 2.31 16 26 H 0.02 1.06 8.07 -2.39 -0.02 1.05 16 27 H 0.00 -0.24 7.42 -2.39 -0.02 -0.25 16 28 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 29 H 0.16 3.57 6.14 -2.91 -0.02 3.56 16 30 H 0.17 2.84 8.06 -2.91 -0.02 2.81 16 31 H 0.09 3.57 6.99 -2.91 -0.02 3.55 16 32 H 0.11 3.73 8.06 -2.91 -0.02 3.71 16 33 H 0.40 7.68 8.83 -92.71 -0.82 6.86 16 34 H 0.41 6.54 8.83 -92.71 -0.82 5.72 16 35 H 0.14 2.97 8.06 -2.91 -0.02 2.95 16 36 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 Total: -1.00 -79.96 307.71 3.26 -76.71 By element: Atomic # 1 Polarization: 21.73 SS G_CDS: -0.53 Total: 21.20 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 4.44 Total: -9.27 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -2.63 Total: -106.75 kcal Atomic # 8 Polarization: -30.24 SS G_CDS: -0.05 Total: -30.29 kcal Atomic # 14 Polarization: 46.38 SS G_CDS: 2.03 Total: 48.40 kcal Total: -79.96 3.26 -76.71 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309979935.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.536 kcal (2) G-P(sol) polarization free energy of solvation -79.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.257 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds