Wall clock time and date at job start Mon Mar 30 2020 04:47:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09004 * 109.47318 * 2 1
4 4 C 1.50702 * 109.47229 * 240.00836 * 2 1 3
5 5 H 1.08004 * 120.00158 * 239.99611 * 4 2 1
6 6 C 1.37881 * 120.00097 * 59.99676 * 4 2 1
7 7 N 1.31517 * 120.00019 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 120.00065 * 180.02562 * 6 4 2
9 9 H 1.48500 * 109.47143 * 59.99729 * 8 6 4
10 10 H 1.48499 * 109.47210 * 180.02562 * 8 6 4
11 11 H 1.48503 * 109.46849 * 300.00009 * 8 6 4
12 12 N 1.46496 * 109.47730 * 120.00591 * 2 1 3
13 13 C 1.34775 * 119.99803 * 275.00302 * 12 2 1
14 14 O 1.21724 * 120.00258 * 359.97438 * 13 12 2
15 15 C 1.46205 * 119.99708 * 179.97438 * 13 12 2
16 16 C 1.35041 * 119.99613 * 173.21880 * 15 13 12
17 17 C 1.46924 * 120.00323 * 349.03212 * 16 15 13
18 18 C 1.40031 * 120.09121 * 316.06945 * 17 16 15
19 19 C 1.37095 * 119.90421 * 179.71690 * 18 17 16
20 20 C 1.39240 * 120.09407 * 0.58122 * 19 18 17
21 21 N 1.39116 * 119.91068 * 179.69423 * 20 19 18
22 22 C 1.39246 * 120.19022 * 359.67217 * 20 19 18
23 23 C 1.37096 * 120.09094 * 0.04693 * 22 20 19
24 24 H 1.09001 * 109.46821 * 299.99190 * 1 2 3
25 25 H 1.08999 * 109.46706 * 179.97438 * 1 2 3
26 26 H 1.08994 * 109.47704 * 59.99618 * 1 2 3
27 27 H 0.97000 * 119.99821 * 179.97438 * 7 6 4
28 28 H 0.96999 * 119.99946 * 94.99792 * 12 2 1
29 29 H 1.07993 * 120.00013 * 353.21519 * 15 13 12
30 30 H 1.07999 * 119.99868 * 169.03373 * 16 15 13
31 31 H 1.08001 * 120.04634 * 359.97438 * 18 17 16
32 32 H 1.07997 * 119.95486 * 180.27870 * 19 18 17
33 33 H 0.96995 * 120.00622 * 179.97438 * 21 20 19
34 34 H 0.97000 * 119.99666 * 359.97438 * 21 20 19
35 35 H 1.07994 * 119.95879 * 180.02562 * 22 20 19
36 36 H 1.08006 * 120.04837 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7102 -1.2306
5 1 2.6533 -1.5883 -1.1316
6 6 1.6992 -0.2390 -2.4828
7 7 0.9426 0.8299 -2.6034
8 14 2.3213 -1.1198 -4.0082
9 1 1.8259 -2.5198 -4.0081
10 1 1.8269 -0.4193 -5.2206
11 1 3.8064 -1.1203 -4.0084
12 7 2.0184 -0.6907 1.1960
13 6 2.1471 -0.0184 2.3570
14 8 1.8580 1.1627 2.4117
15 6 2.6341 -0.7079 3.5508
16 6 2.8935 -0.0079 4.6761
17 6 2.9208 1.4606 4.6380
18 6 3.5712 2.1237 3.5902
19 6 3.5894 3.4941 3.5553
20 6 2.9727 4.2265 4.5663
21 7 2.9989 5.6169 4.5305
22 6 2.3293 3.5711 5.6130
23 6 2.3015 2.2010 5.6525
24 1 -0.3633 0.5137 0.8901
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3634 0.5138 -0.8899
27 1 0.7086 1.1616 -3.4843
28 1 2.2491 -1.6318 1.1523
29 1 2.7863 -1.7769 3.5326
30 1 3.0808 -0.5276 5.6042
31 1 4.0543 1.5564 2.8083
32 1 4.0869 4.0064 2.7452
33 1 2.5695 6.1284 5.2339
34 1 3.4468 6.0749 3.8021
35 1 1.8519 4.1428 6.3950
36 1 1.8027 1.6934 6.4649
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000309980094.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:47:41
Heat of formation + Delta-G solvation = 9.549942 kcal
Electronic energy + Delta-G solvation = -18871.856861 eV
Core-core repulsion = 15935.220395 eV
Total energy + Delta-G solvation = -2936.636466 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.36 seconds
Orbital eigenvalues (eV)
-39.48074 -38.31376 -35.26227 -34.29940 -32.38586 -32.10178 -30.58125 -29.05279
-27.38307 -25.20713 -23.40817 -22.36057 -21.42936 -19.90888 -18.92010 -17.27209
-16.69902 -16.64963 -15.87422 -15.23604 -14.64156 -14.21188 -14.07811 -13.53799
-13.43583 -13.19675 -12.93432 -12.71362 -12.47125 -12.23757 -11.61903 -11.23618
-11.02993 -10.91915 -10.74977 -10.68757 -10.45290 -10.24378 -10.18802 -9.05166
-8.99158 -8.92519 -8.49704 -8.34943 -7.69710 -6.92610 -6.08356 -4.17473
1.27285 1.95983 2.42223 3.27562 3.32626 3.34028 4.03147 4.15408
4.26332 4.35058 4.51830 5.15579 5.22964 5.23698 5.32802 5.50863
5.74070 5.80267 5.95484 6.14928 6.37165 6.44343 6.52906 6.72476
6.87714 6.91198 7.04664 7.14208 7.20934 7.22564 7.55766 7.65163
7.71616 7.77340 7.87486 7.98823 8.20812 8.77805 8.86302 9.28155
9.51080 10.97462
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.026494 B = 0.004845 C = 0.004416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1056.582545 B = 5777.326556 C = 6338.720563
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.265 3.735
3 H 0.048 0.952
4 C -0.533 4.533
5 H 0.060 0.940
6 C 0.066 3.934
7 N -0.884 5.884
8 Si 0.901 3.099
9 H -0.276 1.276
10 H -0.286 1.286
11 H -0.277 1.277
12 N -0.705 5.705
13 C 0.523 3.477
14 O -0.541 6.541
15 C -0.214 4.214
16 C -0.031 4.031
17 C -0.126 4.126
18 C 0.023 3.977
19 C -0.207 4.207
20 C 0.224 3.776
21 N -0.879 5.879
22 C -0.220 4.220
23 C -0.054 4.054
24 H 0.014 0.986
25 H 0.025 0.975
26 H 0.088 0.912
27 H 0.264 0.736
28 H 0.387 0.613
29 H 0.123 0.877
30 H 0.124 0.876
31 H 0.113 0.887
32 H 0.114 0.886
33 H 0.394 0.606
34 H 0.396 0.604
35 H 0.112 0.888
36 H 0.115 0.885
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.624 2.436 14.716 15.616
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.204 4.204
2 C 0.163 3.837
3 H 0.066 0.934
4 C -0.572 4.572
5 H 0.078 0.922
6 C -0.137 4.137
7 N -0.522 5.522
8 Si 0.728 3.272
9 H -0.202 1.202
10 H -0.212 1.212
11 H -0.202 1.202
12 N -0.352 5.352
13 C 0.310 3.690
14 O -0.421 6.421
15 C -0.235 4.235
16 C -0.051 4.051
17 C -0.128 4.128
18 C 0.004 3.996
19 C -0.230 4.230
20 C 0.119 3.881
21 N -0.417 5.417
22 C -0.242 4.242
23 C -0.073 4.073
24 H 0.034 0.966
25 H 0.044 0.956
26 H 0.107 0.893
27 H 0.074 0.926
28 H 0.219 0.781
29 H 0.141 0.859
30 H 0.141 0.859
31 H 0.131 0.869
32 H 0.132 0.868
33 H 0.221 0.779
34 H 0.224 0.776
35 H 0.130 0.870
36 H 0.133 0.867
Dipole moment (debyes) X Y Z Total
from point charges 4.310 3.359 14.538 15.531
hybrid contribution 0.215 -0.671 -1.050 1.265
sum 4.524 2.688 13.488 14.478
Atomic orbital electron populations
1.22060 0.98609 0.98967 1.00805 1.18686 0.90924 0.93939 0.80111
0.93418 1.21209 1.32347 1.13163 0.90437 0.92201 1.24888 0.94842
0.94961 0.99011 1.69902 1.35888 1.22503 1.23878 0.86525 0.79147
0.79614 0.81892 1.20179 1.21165 1.20204 1.46530 1.64601 1.13495
1.10556 1.18367 0.79613 0.87220 0.83815 1.90835 1.51436 1.15218
1.84636 1.23183 1.05192 1.00089 0.95010 1.22165 0.93390 0.92794
0.96726 1.18557 1.04655 0.92303 0.97277 1.20694 0.92592 0.93264
0.93046 1.20256 1.08247 0.94324 1.00128 1.17842 0.92954 0.83630
0.93640 1.42351 1.64900 1.03608 1.30880 1.20128 1.08864 0.94667
1.00580 1.20681 0.96655 0.93124 0.96824 0.96643 0.95631 0.89321
0.92599 0.78089 0.85902 0.85865 0.86871 0.86767 0.77893 0.77643
0.87021 0.86742
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.75 9.26 37.16 0.34 -3.40 16
2 C 0.27 6.89 2.56 -69.09 -0.18 6.71 16
3 H 0.05 1.42 7.58 -51.93 -0.39 1.03 16
4 C -0.53 -14.34 8.73 -34.44 -0.30 -14.64 16
5 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16
6 C 0.07 1.80 5.30 -17.82 -0.09 1.71 16
7 N -0.88 -25.27 11.32 55.43 0.63 -24.64 16
8 Si 0.90 20.85 29.54 -169.99 -5.02 15.82 16
9 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16
10 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16
11 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16
12 N -0.71 -15.10 5.06 -56.40 -0.29 -15.39 16
13 C 0.52 10.70 6.75 -13.06 -0.09 10.62 16
14 O -0.54 -12.81 11.82 5.17 0.06 -12.75 16
15 C -0.21 -3.31 9.91 -37.52 -0.37 -3.69 16
16 C -0.03 -0.44 9.80 -37.20 -0.36 -0.80 16
17 C -0.13 -2.04 4.53 -105.04 -0.48 -2.52 16
18 C 0.02 0.41 6.57 -39.32 -0.26 0.15 16
19 C -0.21 -3.42 9.85 -39.62 -0.39 -3.81 16
20 C 0.22 3.28 6.75 -83.81 -0.57 2.71 16
21 N -0.88 -9.58 9.06 32.43 0.29 -9.29 16
22 C -0.22 -3.11 9.85 -39.62 -0.39 -3.50 16
23 C -0.05 -0.79 9.76 -39.33 -0.38 -1.17 16
24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16
25 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16
26 H 0.09 2.46 6.07 -51.93 -0.32 2.15 16
27 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16
28 H 0.39 7.22 8.52 -40.82 -0.35 6.87 16
29 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16
30 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16
31 H 0.11 2.11 7.03 -52.49 -0.37 1.74 16
32 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16
33 H 0.39 3.36 8.83 -40.82 -0.36 3.00 16
34 H 0.40 3.75 8.83 -40.82 -0.36 3.39 16
35 H 0.11 1.30 8.06 -52.49 -0.42 0.87 16
36 H 0.11 1.37 8.06 -52.48 -0.42 0.95 16
LS Contribution 307.22 15.07 4.63 4.63
Total: -1.00 -32.01 307.22 -7.86 -39.87
By element:
Atomic # 1 Polarization: 18.03 SS G_CDS: -4.65 Total: 13.38 kcal
Atomic # 6 Polarization: -8.12 SS G_CDS: -3.52 Total: -11.64 kcal
Atomic # 7 Polarization: -49.96 SS G_CDS: 0.64 Total: -49.32 kcal
Atomic # 8 Polarization: -12.81 SS G_CDS: 0.06 Total: -12.75 kcal
Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal
Total LS contribution 4.63 Total: 4.63 kcal
Total: -32.01 -7.86 -39.87 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000309980094.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 49.417 kcal
(2) G-P(sol) polarization free energy of solvation -32.008 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.409 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.867 kcal
(6) G-S(sol) free energy of system = (1) + (5) 9.550 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.36 seconds