Wall clock time and date at job start Mon Mar 30 2020 04:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.47318 * 2 1 4 4 C 1.50702 * 109.47229 * 240.00836 * 2 1 3 5 5 H 1.08004 * 120.00158 * 239.99611 * 4 2 1 6 6 C 1.37881 * 120.00097 * 59.99676 * 4 2 1 7 7 N 1.31517 * 120.00019 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00065 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47143 * 59.99729 * 8 6 4 10 10 H 1.48499 * 109.47210 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46849 * 300.00009 * 8 6 4 12 12 N 1.46496 * 109.47730 * 120.00591 * 2 1 3 13 13 C 1.34775 * 119.99803 * 275.00302 * 12 2 1 14 14 O 1.21724 * 120.00258 * 359.97438 * 13 12 2 15 15 C 1.46205 * 119.99708 * 179.97438 * 13 12 2 16 16 C 1.35041 * 119.99613 * 173.21880 * 15 13 12 17 17 C 1.46924 * 120.00323 * 349.03212 * 16 15 13 18 18 C 1.40031 * 120.09121 * 316.06945 * 17 16 15 19 19 C 1.37095 * 119.90421 * 179.71690 * 18 17 16 20 20 C 1.39240 * 120.09407 * 0.58122 * 19 18 17 21 21 N 1.39116 * 119.91068 * 179.69423 * 20 19 18 22 22 C 1.39246 * 120.19022 * 359.67217 * 20 19 18 23 23 C 1.37096 * 120.09094 * 0.04693 * 22 20 19 24 24 H 1.09001 * 109.46821 * 299.99190 * 1 2 3 25 25 H 1.08999 * 109.46706 * 179.97438 * 1 2 3 26 26 H 1.08994 * 109.47704 * 59.99618 * 1 2 3 27 27 H 0.97000 * 119.99821 * 179.97438 * 7 6 4 28 28 H 0.96999 * 119.99946 * 94.99792 * 12 2 1 29 29 H 1.07993 * 120.00013 * 353.21519 * 15 13 12 30 30 H 1.07999 * 119.99868 * 169.03373 * 16 15 13 31 31 H 1.08001 * 120.04634 * 359.97438 * 18 17 16 32 32 H 1.07997 * 119.95486 * 180.27870 * 19 18 17 33 33 H 0.96995 * 120.00622 * 179.97438 * 21 20 19 34 34 H 0.97000 * 119.99666 * 359.97438 * 21 20 19 35 35 H 1.07994 * 119.95879 * 180.02562 * 22 20 19 36 36 H 1.08006 * 120.04837 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6533 -1.5883 -1.1316 6 6 1.6992 -0.2390 -2.4828 7 7 0.9426 0.8299 -2.6034 8 14 2.3213 -1.1198 -4.0082 9 1 1.8259 -2.5198 -4.0081 10 1 1.8269 -0.4193 -5.2206 11 1 3.8064 -1.1203 -4.0084 12 7 2.0184 -0.6907 1.1960 13 6 2.1471 -0.0184 2.3570 14 8 1.8580 1.1627 2.4117 15 6 2.6341 -0.7079 3.5508 16 6 2.8935 -0.0079 4.6761 17 6 2.9208 1.4606 4.6380 18 6 3.5712 2.1237 3.5902 19 6 3.5894 3.4941 3.5553 20 6 2.9727 4.2265 4.5663 21 7 2.9989 5.6169 4.5305 22 6 2.3293 3.5711 5.6130 23 6 2.3015 2.2010 5.6525 24 1 -0.3633 0.5137 0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 -0.8899 27 1 0.7086 1.1616 -3.4843 28 1 2.2491 -1.6318 1.1523 29 1 2.7863 -1.7769 3.5326 30 1 3.0808 -0.5276 5.6042 31 1 4.0543 1.5564 2.8083 32 1 4.0869 4.0064 2.7452 33 1 2.5695 6.1284 5.2339 34 1 3.4468 6.0749 3.8021 35 1 1.8519 4.1428 6.3950 36 1 1.8027 1.6934 6.4649 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309980094.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:41 Heat of formation + Delta-G solvation = -12.638031 kcal Electronic energy + Delta-G solvation = -18872.819003 eV Core-core repulsion = 15935.220395 eV Total energy + Delta-G solvation = -2937.598608 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.87064 -39.70245 -36.88311 -35.73521 -34.24571 -33.38136 -31.76583 -30.91936 -28.63325 -27.33266 -24.82646 -23.59262 -22.86745 -21.63153 -20.46547 -18.74219 -18.04965 -17.73320 -17.46375 -17.08997 -16.21736 -15.72578 -15.49984 -14.94178 -14.81740 -14.48167 -14.35947 -14.15170 -13.92327 -13.70166 -13.59065 -12.94509 -12.84428 -12.72110 -12.37730 -12.25347 -12.12465 -11.89975 -11.58450 -11.09769 -10.62624 -10.44187 -10.15797 -9.76329 -9.39563 -8.17073 -8.04901 -6.34524 0.06475 0.75925 1.22508 1.44070 1.46537 1.54323 2.37971 2.64708 2.86369 3.06283 3.13419 3.17972 4.04928 4.07790 4.19242 4.25179 4.57706 4.64268 4.76159 4.82186 4.93231 5.03878 5.11711 5.21381 5.27915 5.35733 5.47307 5.56385 5.65540 5.71189 5.74612 5.92774 6.01511 6.10843 6.12789 6.65296 6.74328 7.03309 7.12846 7.34157 7.72345 8.89274 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.026494 B = 0.004845 C = 0.004416 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1056.582545 B = 5777.326556 C = 6338.720563 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.274 3.726 3 H -0.005 1.005 4 C -0.547 4.547 5 H 0.072 0.928 6 C 0.013 3.987 7 N -0.919 5.919 8 Si 0.973 3.027 9 H -0.263 1.263 10 H -0.286 1.286 11 H -0.271 1.271 12 N -0.706 5.706 13 C 0.515 3.485 14 O -0.580 6.580 15 C -0.231 4.231 16 C -0.006 4.006 17 C -0.153 4.153 18 C 0.002 3.998 19 C -0.235 4.235 20 C 0.221 3.779 21 N -0.866 5.866 22 C -0.226 4.226 23 C -0.053 4.053 24 H 0.009 0.991 25 H 0.038 0.962 26 H 0.064 0.936 27 H 0.265 0.735 28 H 0.402 0.598 29 H 0.161 0.839 30 H 0.173 0.827 31 H 0.087 0.913 32 H 0.109 0.891 33 H 0.408 0.592 34 H 0.403 0.597 35 H 0.142 0.858 36 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.872 1.149 16.521 17.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.170 3.830 3 H 0.013 0.987 4 C -0.585 4.585 5 H 0.090 0.910 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.797 3.203 9 H -0.188 1.188 10 H -0.211 1.211 11 H -0.196 1.196 12 N -0.354 5.354 13 C 0.306 3.694 14 O -0.463 6.463 15 C -0.252 4.252 16 C -0.025 4.025 17 C -0.156 4.156 18 C -0.018 4.018 19 C -0.258 4.258 20 C 0.115 3.885 21 N -0.405 5.405 22 C -0.248 4.248 23 C -0.072 4.072 24 H 0.028 0.972 25 H 0.057 0.943 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.237 0.763 29 H 0.178 0.822 30 H 0.190 0.810 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.238 0.762 34 H 0.231 0.769 35 H 0.160 0.840 36 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.571 2.071 16.377 17.128 hybrid contribution 0.153 -0.097 -1.513 1.523 sum 4.725 1.973 14.864 15.721 Atomic orbital electron populations 1.21870 0.98647 0.99171 0.99259 1.18234 0.90820 0.91772 0.82154 0.98668 1.21544 1.32525 1.13527 0.90949 0.91007 1.25822 0.94862 0.95584 1.02363 1.70062 1.37054 1.24036 1.24586 0.85391 0.78633 0.78734 0.77529 1.18806 1.21127 1.19580 1.46290 1.65217 1.14126 1.09796 1.19240 0.78590 0.86904 0.84700 1.90820 1.52977 1.17135 1.85369 1.23131 1.07501 1.01693 0.92867 1.22654 0.90085 0.91804 0.97963 1.18889 1.05328 0.93877 0.97459 1.20648 0.93939 0.93795 0.93389 1.20383 1.09720 0.94504 1.01213 1.17969 0.92287 0.85048 0.93198 1.42317 1.64311 1.02394 1.31447 1.20550 1.08334 0.95081 1.00862 1.21095 0.95664 0.93508 0.96888 0.97225 0.94319 0.91710 0.92612 0.76344 0.82164 0.80965 0.89491 0.87260 0.76204 0.76868 0.84047 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.93 9.26 71.98 0.67 -6.27 16 2 C 0.27 14.77 2.56 44.25 0.11 14.88 16 3 H 0.00 -0.29 7.58 -2.38 -0.02 -0.31 16 4 C -0.55 -29.83 8.73 25.60 0.22 -29.60 16 5 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16 6 C 0.01 0.74 5.30 84.66 0.45 1.19 16 7 N -0.92 -54.04 11.32 21.45 0.24 -53.80 16 8 Si 0.97 42.77 29.54 68.60 2.03 44.80 16 9 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 10 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 12 N -0.71 -30.73 5.06 -450.55 -2.28 -33.01 16 13 C 0.52 21.44 6.75 86.31 0.58 22.02 16 14 O -0.58 -28.64 11.82 -4.42 -0.05 -28.70 16 15 C -0.23 -6.76 9.91 23.60 0.23 -6.53 16 16 C -0.01 -0.15 9.80 23.81 0.23 0.09 16 17 C -0.15 -4.83 4.53 -20.13 -0.09 -4.92 16 18 C 0.00 0.06 6.57 22.44 0.15 0.20 16 19 C -0.24 -8.12 9.85 22.24 0.22 -7.90 16 20 C 0.22 6.36 6.75 38.47 0.26 6.62 16 21 N -0.87 -17.86 9.06 -51.31 -0.46 -18.32 16 22 C -0.23 -5.90 9.85 22.24 0.22 -5.68 16 23 C -0.05 -1.42 9.76 22.44 0.22 -1.20 16 24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 25 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16 26 H 0.06 3.74 6.07 -2.39 -0.01 3.72 16 27 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 28 H 0.40 14.79 8.52 -92.71 -0.79 14.00 16 29 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16 30 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16 31 H 0.09 3.52 7.03 -2.91 -0.02 3.50 16 32 H 0.11 3.66 8.06 -2.91 -0.02 3.63 16 33 H 0.41 6.11 8.83 -92.71 -0.82 5.29 16 34 H 0.40 7.37 8.83 -92.71 -0.82 6.55 16 35 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 36 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16 Total: -1.00 -72.65 307.22 1.64 -71.01 By element: Atomic # 1 Polarization: 36.43 SS G_CDS: -1.31 Total: 35.12 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 3.47 Total: -17.10 kcal Atomic # 7 Polarization: -102.63 SS G_CDS: -2.50 Total: -105.13 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.05 Total: -28.70 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal Total: -72.65 1.64 -71.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309980094.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.376 kcal (2) G-P(sol) polarization free energy of solvation -72.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds