Wall clock time and date at job start Mon Mar 30 2020 04:47:41
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 H 1.09004 * 109.47318 * 2 1
4 4 C 1.50702 * 109.47229 * 240.00836 * 2 1 3
5 5 H 1.08004 * 120.00158 * 239.99611 * 4 2 1
6 6 C 1.37881 * 120.00097 * 59.99676 * 4 2 1
7 7 N 1.31517 * 120.00019 * 359.97438 * 6 4 2
8 8 Si 1.86805 * 120.00065 * 180.02562 * 6 4 2
9 9 H 1.48500 * 109.47143 * 59.99729 * 8 6 4
10 10 H 1.48499 * 109.47210 * 180.02562 * 8 6 4
11 11 H 1.48503 * 109.46849 * 300.00009 * 8 6 4
12 12 N 1.46496 * 109.47730 * 120.00591 * 2 1 3
13 13 C 1.34775 * 119.99803 * 275.00302 * 12 2 1
14 14 O 1.21724 * 120.00258 * 359.97438 * 13 12 2
15 15 C 1.46205 * 119.99708 * 179.97438 * 13 12 2
16 16 C 1.35041 * 119.99613 * 173.21880 * 15 13 12
17 17 C 1.46924 * 120.00323 * 349.03212 * 16 15 13
18 18 C 1.40031 * 120.09121 * 316.06945 * 17 16 15
19 19 C 1.37095 * 119.90421 * 179.71690 * 18 17 16
20 20 C 1.39240 * 120.09407 * 0.58122 * 19 18 17
21 21 N 1.39116 * 119.91068 * 179.69423 * 20 19 18
22 22 C 1.39246 * 120.19022 * 359.67217 * 20 19 18
23 23 C 1.37096 * 120.09094 * 0.04693 * 22 20 19
24 24 H 1.09001 * 109.46821 * 299.99190 * 1 2 3
25 25 H 1.08999 * 109.46706 * 179.97438 * 1 2 3
26 26 H 1.08994 * 109.47704 * 59.99618 * 1 2 3
27 27 H 0.97000 * 119.99821 * 179.97438 * 7 6 4
28 28 H 0.96999 * 119.99946 * 94.99792 * 12 2 1
29 29 H 1.07993 * 120.00013 * 353.21519 * 15 13 12
30 30 H 1.07999 * 119.99868 * 169.03373 * 16 15 13
31 31 H 1.08001 * 120.04634 * 359.97438 * 18 17 16
32 32 H 1.07997 * 119.95486 * 180.27870 * 19 18 17
33 33 H 0.96995 * 120.00622 * 179.97438 * 21 20 19
34 34 H 0.97000 * 119.99666 * 359.97438 * 21 20 19
35 35 H 1.07994 * 119.95879 * 180.02562 * 22 20 19
36 36 H 1.08006 * 120.04837 * 179.97438 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0323 -0.7102 -1.2306
5 1 2.6533 -1.5883 -1.1316
6 6 1.6992 -0.2390 -2.4828
7 7 0.9426 0.8299 -2.6034
8 14 2.3213 -1.1198 -4.0082
9 1 1.8259 -2.5198 -4.0081
10 1 1.8269 -0.4193 -5.2206
11 1 3.8064 -1.1203 -4.0084
12 7 2.0184 -0.6907 1.1960
13 6 2.1471 -0.0184 2.3570
14 8 1.8580 1.1627 2.4117
15 6 2.6341 -0.7079 3.5508
16 6 2.8935 -0.0079 4.6761
17 6 2.9208 1.4606 4.6380
18 6 3.5712 2.1237 3.5902
19 6 3.5894 3.4941 3.5553
20 6 2.9727 4.2265 4.5663
21 7 2.9989 5.6169 4.5305
22 6 2.3293 3.5711 5.6130
23 6 2.3015 2.2010 5.6525
24 1 -0.3633 0.5137 0.8901
25 1 -0.3633 -1.0277 -0.0005
26 1 -0.3634 0.5138 -0.8899
27 1 0.7086 1.1616 -3.4843
28 1 2.2491 -1.6318 1.1523
29 1 2.7863 -1.7769 3.5326
30 1 3.0808 -0.5276 5.6042
31 1 4.0543 1.5564 2.8083
32 1 4.0869 4.0064 2.7452
33 1 2.5695 6.1284 5.2339
34 1 3.4468 6.0749 3.8021
35 1 1.8519 4.1428 6.3950
36 1 1.8027 1.6934 6.4649
RHF calculation, no. of doubly occupied orbitals= 48
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000309980094.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 04:47:41
Heat of formation + Delta-G solvation = -12.638031 kcal
Electronic energy + Delta-G solvation = -18872.819003 eV
Core-core repulsion = 15935.220395 eV
Total energy + Delta-G solvation = -2937.598608 eV
No. of doubly occupied orbitals = 48
Molecular weight
(most abundant/longest-lived isotopes) = 260.127 amu
Computer time = 0.40 seconds
Orbital eigenvalues (eV)
-40.87064 -39.70245 -36.88311 -35.73521 -34.24571 -33.38136 -31.76583 -30.91936
-28.63325 -27.33266 -24.82646 -23.59262 -22.86745 -21.63153 -20.46547 -18.74219
-18.04965 -17.73320 -17.46375 -17.08997 -16.21736 -15.72578 -15.49984 -14.94178
-14.81740 -14.48167 -14.35947 -14.15170 -13.92327 -13.70166 -13.59065 -12.94509
-12.84428 -12.72110 -12.37730 -12.25347 -12.12465 -11.89975 -11.58450 -11.09769
-10.62624 -10.44187 -10.15797 -9.76329 -9.39563 -8.17073 -8.04901 -6.34524
0.06475 0.75925 1.22508 1.44070 1.46537 1.54323 2.37971 2.64708
2.86369 3.06283 3.13419 3.17972 4.04928 4.07790 4.19242 4.25179
4.57706 4.64268 4.76159 4.82186 4.93231 5.03878 5.11711 5.21381
5.27915 5.35733 5.47307 5.56385 5.65540 5.71189 5.74612 5.92774
6.01511 6.10843 6.12789 6.65296 6.74328 7.03309 7.12846 7.34157
7.72345 8.89274
Molecular weight = 260.13amu
Principal moments of inertia in cm(-1)
A = 0.026494 B = 0.004845 C = 0.004416
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1056.582545 B = 5777.326556 C = 6338.720563
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.131 4.131
2 C 0.274 3.726
3 H -0.005 1.005
4 C -0.547 4.547
5 H 0.072 0.928
6 C 0.013 3.987
7 N -0.919 5.919
8 Si 0.973 3.027
9 H -0.263 1.263
10 H -0.286 1.286
11 H -0.271 1.271
12 N -0.706 5.706
13 C 0.515 3.485
14 O -0.580 6.580
15 C -0.231 4.231
16 C -0.006 4.006
17 C -0.153 4.153
18 C 0.002 3.998
19 C -0.235 4.235
20 C 0.221 3.779
21 N -0.866 5.866
22 C -0.226 4.226
23 C -0.053 4.053
24 H 0.009 0.991
25 H 0.038 0.962
26 H 0.064 0.936
27 H 0.265 0.735
28 H 0.402 0.598
29 H 0.161 0.839
30 H 0.173 0.827
31 H 0.087 0.913
32 H 0.109 0.891
33 H 0.408 0.592
34 H 0.403 0.597
35 H 0.142 0.858
36 H 0.147 0.853
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 4.872 1.149 16.521 17.263
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.189 4.189
2 C 0.170 3.830
3 H 0.013 0.987
4 C -0.585 4.585
5 H 0.090 0.910
6 C -0.186 4.186
7 N -0.557 5.557
8 Si 0.797 3.203
9 H -0.188 1.188
10 H -0.211 1.211
11 H -0.196 1.196
12 N -0.354 5.354
13 C 0.306 3.694
14 O -0.463 6.463
15 C -0.252 4.252
16 C -0.025 4.025
17 C -0.156 4.156
18 C -0.018 4.018
19 C -0.258 4.258
20 C 0.115 3.885
21 N -0.405 5.405
22 C -0.248 4.248
23 C -0.072 4.072
24 H 0.028 0.972
25 H 0.057 0.943
26 H 0.083 0.917
27 H 0.074 0.926
28 H 0.237 0.763
29 H 0.178 0.822
30 H 0.190 0.810
31 H 0.105 0.895
32 H 0.127 0.873
33 H 0.238 0.762
34 H 0.231 0.769
35 H 0.160 0.840
36 H 0.165 0.835
Dipole moment (debyes) X Y Z Total
from point charges 4.571 2.071 16.377 17.128
hybrid contribution 0.153 -0.097 -1.513 1.523
sum 4.725 1.973 14.864 15.721
Atomic orbital electron populations
1.21870 0.98647 0.99171 0.99259 1.18234 0.90820 0.91772 0.82154
0.98668 1.21544 1.32525 1.13527 0.90949 0.91007 1.25822 0.94862
0.95584 1.02363 1.70062 1.37054 1.24036 1.24586 0.85391 0.78633
0.78734 0.77529 1.18806 1.21127 1.19580 1.46290 1.65217 1.14126
1.09796 1.19240 0.78590 0.86904 0.84700 1.90820 1.52977 1.17135
1.85369 1.23131 1.07501 1.01693 0.92867 1.22654 0.90085 0.91804
0.97963 1.18889 1.05328 0.93877 0.97459 1.20648 0.93939 0.93795
0.93389 1.20383 1.09720 0.94504 1.01213 1.17969 0.92287 0.85048
0.93198 1.42317 1.64311 1.02394 1.31447 1.20550 1.08334 0.95081
1.00862 1.21095 0.95664 0.93508 0.96888 0.97225 0.94319 0.91710
0.92612 0.76344 0.82164 0.80965 0.89491 0.87260 0.76204 0.76868
0.84047 0.83516
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -6.93 9.26 71.98 0.67 -6.27 16
2 C 0.27 14.77 2.56 44.25 0.11 14.88 16
3 H 0.00 -0.29 7.58 -2.38 -0.02 -0.31 16
4 C -0.55 -29.83 8.73 25.60 0.22 -29.60 16
5 H 0.07 3.65 7.74 -2.91 -0.02 3.63 16
6 C 0.01 0.74 5.30 84.66 0.45 1.19 16
7 N -0.92 -54.04 11.32 21.45 0.24 -53.80 16
8 Si 0.97 42.77 29.54 68.60 2.03 44.80 16
9 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16
10 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16
11 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16
12 N -0.71 -30.73 5.06 -450.55 -2.28 -33.01 16
13 C 0.52 21.44 6.75 86.31 0.58 22.02 16
14 O -0.58 -28.64 11.82 -4.42 -0.05 -28.70 16
15 C -0.23 -6.76 9.91 23.60 0.23 -6.53 16
16 C -0.01 -0.15 9.80 23.81 0.23 0.09 16
17 C -0.15 -4.83 4.53 -20.13 -0.09 -4.92 16
18 C 0.00 0.06 6.57 22.44 0.15 0.20 16
19 C -0.24 -8.12 9.85 22.24 0.22 -7.90 16
20 C 0.22 6.36 6.75 38.47 0.26 6.62 16
21 N -0.87 -17.86 9.06 -51.31 -0.46 -18.32 16
22 C -0.23 -5.90 9.85 22.24 0.22 -5.68 16
23 C -0.05 -1.42 9.76 22.44 0.22 -1.20 16
24 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16
25 H 0.04 1.88 8.14 -2.39 -0.02 1.86 16
26 H 0.06 3.74 6.07 -2.39 -0.01 3.72 16
27 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16
28 H 0.40 14.79 8.52 -92.71 -0.79 14.00 16
29 H 0.16 3.40 8.06 -2.91 -0.02 3.38 16
30 H 0.17 2.71 8.06 -2.91 -0.02 2.69 16
31 H 0.09 3.52 7.03 -2.91 -0.02 3.50 16
32 H 0.11 3.66 8.06 -2.91 -0.02 3.63 16
33 H 0.41 6.11 8.83 -92.71 -0.82 5.29 16
34 H 0.40 7.37 8.83 -92.71 -0.82 6.55 16
35 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16
36 H 0.15 2.90 8.06 -2.91 -0.02 2.88 16
Total: -1.00 -72.65 307.22 1.64 -71.01
By element:
Atomic # 1 Polarization: 36.43 SS G_CDS: -1.31 Total: 35.12 kcal
Atomic # 6 Polarization: -20.58 SS G_CDS: 3.47 Total: -17.10 kcal
Atomic # 7 Polarization: -102.63 SS G_CDS: -2.50 Total: -105.13 kcal
Atomic # 8 Polarization: -28.64 SS G_CDS: -0.05 Total: -28.70 kcal
Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.80 kcal
Total: -72.65 1.64 -71.01 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000309980094.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 58.376 kcal
(2) G-P(sol) polarization free energy of solvation -72.650 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.275 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.636 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.014 kcal
(6) G-S(sol) free energy of system = (1) + (5) -12.638 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.40 seconds