Wall clock time and date at job start Mon Mar 30 2020 04:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47195 * 2 1 4 4 C 1.50703 * 109.46898 * 120.00741 * 2 1 3 5 5 H 1.07995 * 120.00046 * 119.99678 * 4 2 1 6 6 C 1.37874 * 119.99536 * 299.99827 * 4 2 1 7 7 N 1.31514 * 120.00476 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99726 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47497 * 59.99896 * 8 6 4 10 10 H 1.48500 * 109.47219 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47205 * 299.99610 * 8 6 4 12 12 N 1.46499 * 109.46839 * 240.00294 * 2 1 3 13 13 C 1.34780 * 120.00323 * 85.00530 * 12 2 1 14 14 O 1.21697 * 119.99360 * 359.97438 * 13 12 2 15 15 C 1.46429 * 120.00378 * 180.02562 * 13 12 2 16 16 C 1.34804 * 119.99925 * 187.02820 * 15 13 12 17 17 C 1.47221 * 119.99974 * 11.31621 * 16 15 13 18 18 C 1.39885 * 120.13127 * 222.50925 * 17 16 15 19 19 C 1.37914 * 119.97787 * 180.02562 * 18 17 16 20 20 C 1.38296 * 120.25188 * 0.02562 * 19 18 17 21 21 C 1.39035 * 120.26920 * 0.02562 * 20 19 18 22 22 N 1.39703 * 119.98619 * 179.97438 * 21 20 19 23 23 C 1.38606 * 120.02008 * 359.97438 * 21 20 19 24 24 H 1.09002 * 109.47096 * 299.99775 * 1 2 3 25 25 H 1.09008 * 109.47115 * 59.99403 * 1 2 3 26 26 H 1.08997 * 109.47392 * 179.97438 * 1 2 3 27 27 H 0.96997 * 120.00339 * 180.02562 * 7 6 4 28 28 H 0.97006 * 120.00293 * 265.00368 * 12 2 1 29 29 H 1.07996 * 119.99922 * 7.01775 * 15 13 12 30 30 H 1.07998 * 119.99775 * 191.31967 * 16 15 13 31 31 H 1.07999 * 120.01382 * 359.75172 * 18 17 16 32 32 H 1.07995 * 119.87562 * 179.97438 * 19 18 17 33 33 H 1.07995 * 119.86329 * 179.97438 * 20 19 18 34 34 H 0.97006 * 119.99465 * 180.02562 * 22 21 20 35 35 H 0.96993 * 120.00168 * 0.02562 * 22 21 20 36 36 H 1.07995 * 120.12558 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6531 -1.5887 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 0.9427 0.8294 2.6034 8 14 2.3223 -1.1199 4.0078 9 1 3.8073 -1.1195 4.0077 10 1 1.8277 -0.4197 5.2204 11 1 1.8277 -2.5202 4.0079 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8573 1.1625 -2.4118 15 6 2.6346 -0.7085 -3.5530 16 6 2.8983 -0.0089 -4.6747 17 6 2.9386 1.4621 -4.6324 18 6 2.3463 2.2105 -5.6550 19 6 2.3864 3.5884 -5.6125 20 6 3.0112 4.2351 -4.5618 21 6 3.6042 3.5015 -3.5404 22 7 4.2342 4.1609 -2.4821 23 6 3.5705 2.1162 -3.5719 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7086 1.1610 3.4844 28 1 2.2489 -1.6318 -1.1528 29 1 2.7830 -1.7781 -3.5362 30 1 3.0799 -0.5276 -5.6044 31 1 1.8615 1.7095 -6.4799 32 1 1.9289 4.1646 -6.4030 33 1 3.0393 5.3144 -4.5350 34 1 4.6484 3.6492 -1.7696 35 1 4.2576 5.1303 -2.4598 36 1 4.0310 1.5447 -2.7797 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309980230.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:45 Heat of formation + Delta-G solvation = 10.724965 kcal Electronic energy + Delta-G solvation = -19049.683360 eV Core-core repulsion = 16113.097847 eV Total energy + Delta-G solvation = -2936.585513 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.50697 -38.23149 -35.08360 -34.29468 -32.80461 -32.33705 -29.73046 -28.56586 -28.07496 -25.24312 -23.85211 -21.94323 -21.40826 -19.96553 -18.97988 -17.35677 -16.49102 -16.05840 -15.84420 -15.43961 -15.00526 -14.24748 -14.12985 -13.77859 -13.40337 -13.07103 -12.94274 -12.64969 -12.39664 -12.02339 -11.64984 -11.18211 -11.08557 -10.96057 -10.79869 -10.70866 -10.34031 -10.29666 -10.21836 -9.48141 -9.02387 -9.01594 -8.53237 -7.86233 -7.65081 -7.05061 -6.11415 -4.20844 1.13961 2.08108 2.35872 3.25011 3.30376 3.31550 4.08361 4.21604 4.22697 4.37302 4.46794 5.03024 5.20428 5.25979 5.44678 5.51067 5.65885 5.73283 5.97450 6.12816 6.24992 6.49108 6.51930 6.73840 6.85744 6.88980 7.01649 7.05427 7.19156 7.27249 7.51743 7.61467 7.73435 7.87758 7.95045 8.10964 8.17488 8.73467 8.82210 9.23286 9.47642 10.94303 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.026355 B = 0.005194 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.164041 B = 5389.105715 C = 5889.185704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.266 3.734 3 H 0.048 0.952 4 C -0.534 4.534 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.705 5.705 13 C 0.518 3.482 14 O -0.536 6.536 15 C -0.198 4.198 16 C -0.047 4.047 17 C -0.021 4.021 18 C -0.161 4.161 19 C -0.093 4.093 20 C -0.193 4.193 21 C 0.203 3.797 22 N -0.881 5.881 23 C -0.101 4.101 24 H 0.089 0.911 25 H 0.014 0.986 26 H 0.025 0.975 27 H 0.264 0.736 28 H 0.387 0.613 29 H 0.126 0.874 30 H 0.129 0.871 31 H 0.112 0.888 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.397 0.603 35 H 0.392 0.608 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.411 1.182 -13.227 14.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.164 3.836 3 H 0.065 0.935 4 C -0.572 4.572 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.352 5.352 13 C 0.305 3.695 14 O -0.415 6.415 15 C -0.219 4.219 16 C -0.067 4.067 17 C -0.022 4.022 18 C -0.181 4.181 19 C -0.111 4.111 20 C -0.215 4.215 21 C 0.100 3.900 22 N -0.420 5.420 23 C -0.123 4.123 24 H 0.107 0.893 25 H 0.034 0.966 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.219 0.781 29 H 0.144 0.856 30 H 0.147 0.853 31 H 0.130 0.870 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.225 0.775 35 H 0.220 0.780 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.073 2.126 -13.086 14.195 hybrid contribution 0.375 -0.887 1.331 1.643 sum 5.448 1.239 -11.756 13.016 Atomic orbital electron populations 1.22067 0.98582 0.98996 1.00836 1.18683 0.90941 0.93883 0.80056 0.93464 1.21201 1.32413 1.13182 0.90425 0.92207 1.24884 0.94826 0.94956 0.99015 1.69898 1.35838 1.22480 1.23910 0.86525 0.79126 0.79639 0.81887 1.20221 1.21147 1.20159 1.46541 1.64573 1.13473 1.10568 1.18420 0.79977 0.87259 0.83830 1.90873 1.50957 1.15044 1.84666 1.23269 1.03633 1.00287 0.94691 1.22275 0.94580 0.92772 0.97040 1.18531 0.97332 0.92092 0.94287 1.20834 1.04164 0.93742 0.99329 1.20564 0.98815 0.94211 0.97552 1.20513 1.05839 0.98650 0.96533 1.17571 0.92657 0.91533 0.88268 1.42377 1.65152 1.08603 1.25870 1.20502 1.02655 0.91875 0.97283 0.89291 0.96641 0.95601 0.92572 0.78092 0.85628 0.85302 0.86967 0.86840 0.87121 0.77464 0.78035 0.86940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 2 C 0.27 6.82 2.56 -69.08 -0.18 6.65 16 3 H 0.05 1.39 7.58 -51.93 -0.39 1.00 16 4 C -0.53 -14.19 8.73 -34.44 -0.30 -14.49 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -25.03 11.32 55.43 0.63 -24.40 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 N -0.70 -14.84 5.06 -56.33 -0.29 -15.13 16 13 C 0.52 10.46 6.70 -12.96 -0.09 10.37 16 14 O -0.54 -12.55 11.79 5.19 0.06 -12.48 16 15 C -0.20 -3.01 9.90 -37.50 -0.37 -3.38 16 16 C -0.05 -0.66 9.81 -37.15 -0.36 -1.02 16 17 C -0.02 -0.35 4.57 -105.08 -0.48 -0.83 16 18 C -0.16 -2.39 9.79 -39.08 -0.38 -2.77 16 19 C -0.09 -1.33 10.02 -39.68 -0.40 -1.72 16 20 C -0.19 -2.89 9.89 -39.26 -0.39 -3.28 16 21 C 0.20 3.35 6.75 -83.84 -0.57 2.78 16 22 N -0.88 -12.33 9.09 32.38 0.29 -12.04 16 23 C -0.10 -1.78 6.43 -38.90 -0.25 -2.03 16 24 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 25 H 0.01 0.37 8.14 -51.92 -0.42 -0.05 16 26 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 28 H 0.39 7.08 8.52 -40.82 -0.35 6.74 16 29 H 0.13 1.49 8.06 -52.49 -0.42 1.06 16 30 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 32 H 0.11 1.30 8.06 -52.49 -0.42 0.88 16 33 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 34 H 0.40 5.47 8.84 -40.82 -0.36 5.11 16 35 H 0.39 4.47 8.84 -40.82 -0.36 4.11 16 36 H 0.11 2.11 6.93 -52.49 -0.36 1.75 16 LS Contribution 307.22 15.07 4.63 4.63 Total: -1.00 -31.52 307.22 -7.85 -39.38 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -4.64 Total: 15.83 kcal Atomic # 6 Polarization: -7.90 SS G_CDS: -3.52 Total: -11.41 kcal Atomic # 7 Polarization: -52.21 SS G_CDS: 0.64 Total: -51.57 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.06 Total: -12.48 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -31.52 -7.85 -39.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309980230.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.101 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.576 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds