Wall clock time and date at job start Mon Mar 30 2020 04:47:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08990 * 109.47195 * 2 1 4 4 C 1.50703 * 109.46898 * 120.00741 * 2 1 3 5 5 H 1.07995 * 120.00046 * 119.99678 * 4 2 1 6 6 C 1.37874 * 119.99536 * 299.99827 * 4 2 1 7 7 N 1.31514 * 120.00476 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99726 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47497 * 59.99896 * 8 6 4 10 10 H 1.48500 * 109.47219 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47205 * 299.99610 * 8 6 4 12 12 N 1.46499 * 109.46839 * 240.00294 * 2 1 3 13 13 C 1.34780 * 120.00323 * 85.00530 * 12 2 1 14 14 O 1.21697 * 119.99360 * 359.97438 * 13 12 2 15 15 C 1.46429 * 120.00378 * 180.02562 * 13 12 2 16 16 C 1.34804 * 119.99925 * 187.02820 * 15 13 12 17 17 C 1.47221 * 119.99974 * 11.31621 * 16 15 13 18 18 C 1.39885 * 120.13127 * 222.50925 * 17 16 15 19 19 C 1.37914 * 119.97787 * 180.02562 * 18 17 16 20 20 C 1.38296 * 120.25188 * 0.02562 * 19 18 17 21 21 C 1.39035 * 120.26920 * 0.02562 * 20 19 18 22 22 N 1.39703 * 119.98619 * 179.97438 * 21 20 19 23 23 C 1.38606 * 120.02008 * 359.97438 * 21 20 19 24 24 H 1.09002 * 109.47096 * 299.99775 * 1 2 3 25 25 H 1.09008 * 109.47115 * 59.99403 * 1 2 3 26 26 H 1.08997 * 109.47392 * 179.97438 * 1 2 3 27 27 H 0.96997 * 120.00339 * 180.02562 * 7 6 4 28 28 H 0.97006 * 120.00293 * 265.00368 * 12 2 1 29 29 H 1.07996 * 119.99922 * 7.01775 * 15 13 12 30 30 H 1.07998 * 119.99775 * 191.31967 * 16 15 13 31 31 H 1.07999 * 120.01382 * 359.75172 * 18 17 16 32 32 H 1.07995 * 119.87562 * 179.97438 * 19 18 17 33 33 H 1.07995 * 119.86329 * 179.97438 * 20 19 18 34 34 H 0.97006 * 119.99465 * 180.02562 * 22 21 20 35 35 H 0.96993 * 120.00168 * 0.02562 * 22 21 20 36 36 H 1.07995 * 120.12558 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7106 1.2304 5 1 2.6531 -1.5887 1.1312 6 6 1.6992 -0.2396 2.4827 7 7 0.9427 0.8294 2.6034 8 14 2.3223 -1.1199 4.0078 9 1 3.8073 -1.1195 4.0077 10 1 1.8277 -0.4197 5.2204 11 1 1.8277 -2.5202 4.0079 12 7 2.0183 -0.6906 -1.1962 13 6 2.1471 -0.0182 -2.3572 14 8 1.8573 1.1625 -2.4118 15 6 2.6346 -0.7085 -3.5530 16 6 2.8983 -0.0089 -4.6747 17 6 2.9386 1.4621 -4.6324 18 6 2.3463 2.2105 -5.6550 19 6 2.3864 3.5884 -5.6125 20 6 3.0112 4.2351 -4.5618 21 6 3.6042 3.5015 -3.5404 22 7 4.2342 4.1609 -2.4821 23 6 3.5705 2.1162 -3.5719 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5140 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 0.7086 1.1610 3.4844 28 1 2.2489 -1.6318 -1.1528 29 1 2.7830 -1.7781 -3.5362 30 1 3.0799 -0.5276 -5.6044 31 1 1.8615 1.7095 -6.4799 32 1 1.9289 4.1646 -6.4030 33 1 3.0393 5.3144 -4.5350 34 1 4.6484 3.6492 -1.7696 35 1 4.2576 5.1303 -2.4598 36 1 4.0310 1.5447 -2.7797 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309980230.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:45 Heat of formation + Delta-G solvation = -10.905873 kcal Electronic energy + Delta-G solvation = -19050.621344 eV Core-core repulsion = 16113.097847 eV Total energy + Delta-G solvation = -2937.523496 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.90876 -39.61786 -36.81573 -35.62772 -34.26422 -34.01954 -31.31674 -30.08685 -29.30010 -27.34711 -25.22803 -23.38352 -22.67670 -21.68610 -20.50850 -18.82675 -17.95632 -17.50173 -17.29499 -16.92016 -16.58151 -15.81911 -15.63224 -15.18064 -14.74463 -14.39058 -14.35914 -14.34479 -13.82757 -13.60256 -13.30565 -12.94291 -12.85313 -12.72714 -12.31320 -12.27284 -12.16596 -11.93395 -11.50777 -11.11300 -10.72779 -10.59822 -10.47702 -9.61863 -8.93295 -8.25748 -8.17438 -6.35461 -0.06543 0.89893 1.15691 1.43680 1.45715 1.53615 2.36837 2.60215 2.82100 3.08809 3.12605 3.20459 3.92225 4.12039 4.20977 4.37392 4.56703 4.61310 4.74534 4.80892 4.91873 4.99207 5.10058 5.12106 5.30305 5.37218 5.47480 5.56125 5.63998 5.71767 5.74904 5.86971 5.96764 6.11258 6.16051 6.69355 6.73325 7.04009 7.09759 7.33274 7.69384 8.88250 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.026355 B = 0.005194 C = 0.004753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1062.164041 B = 5389.105715 C = 5889.185704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.276 3.724 3 H -0.004 1.004 4 C -0.547 4.547 5 H 0.072 0.928 6 C 0.014 3.986 7 N -0.919 5.919 8 Si 0.972 3.028 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.264 1.264 12 N -0.705 5.705 13 C 0.511 3.489 14 O -0.574 6.574 15 C -0.211 4.211 16 C -0.026 4.026 17 C -0.043 4.043 18 C -0.167 4.167 19 C -0.094 4.094 20 C -0.203 4.203 21 C 0.182 3.818 22 N -0.879 5.879 23 C -0.128 4.128 24 H 0.064 0.936 25 H 0.008 0.992 26 H 0.038 0.962 27 H 0.265 0.735 28 H 0.402 0.598 29 H 0.166 0.834 30 H 0.179 0.821 31 H 0.141 0.859 32 H 0.146 0.854 33 H 0.131 0.869 34 H 0.395 0.605 35 H 0.404 0.596 36 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.815 -0.265 -14.806 15.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.172 3.828 3 H 0.014 0.986 4 C -0.585 4.585 5 H 0.090 0.910 6 C -0.185 4.185 7 N -0.557 5.557 8 Si 0.796 3.204 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.189 1.189 12 N -0.353 5.353 13 C 0.301 3.699 14 O -0.456 6.456 15 C -0.232 4.232 16 C -0.045 4.045 17 C -0.044 4.044 18 C -0.187 4.187 19 C -0.113 4.113 20 C -0.226 4.226 21 C 0.078 3.922 22 N -0.419 5.419 23 C -0.151 4.151 24 H 0.083 0.917 25 H 0.027 0.973 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.237 0.763 29 H 0.183 0.817 30 H 0.196 0.804 31 H 0.159 0.841 32 H 0.163 0.837 33 H 0.149 0.851 34 H 0.223 0.777 35 H 0.233 0.767 36 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 5.495 0.659 -14.693 15.700 hybrid contribution 0.256 -0.313 1.730 1.776 sum 5.751 0.347 -12.963 14.185 Atomic orbital electron populations 1.21883 0.98735 0.99173 0.99256 1.18222 0.90736 0.91782 0.82073 0.98573 1.21531 1.32536 1.13516 0.90919 0.91012 1.25803 0.94856 0.95566 1.02325 1.70056 1.37029 1.24019 1.24582 0.85403 0.78646 0.78729 0.77584 1.19549 1.21185 1.18868 1.46291 1.65146 1.14105 1.09798 1.19282 0.78961 0.86948 0.84723 1.90859 1.52417 1.16960 1.85401 1.23233 1.05568 1.01977 0.92406 1.22774 0.91647 0.91701 0.98365 1.18950 0.97371 0.93793 0.94278 1.21231 1.03668 0.94202 0.99588 1.21027 0.97844 0.94570 0.97840 1.20864 1.05571 0.99826 0.96349 1.17888 0.93321 0.91677 0.89292 1.42374 1.64841 1.09248 1.25411 1.20488 1.04461 0.92507 0.97669 0.91700 0.97277 0.94319 0.92618 0.76331 0.81686 0.80426 0.84082 0.83672 0.85096 0.77734 0.76719 0.89483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.91 9.26 71.98 0.67 -6.25 16 2 C 0.28 14.60 2.56 44.25 0.11 14.71 16 3 H 0.00 -0.23 7.58 -2.39 -0.02 -0.25 16 4 C -0.55 -29.34 8.73 25.60 0.22 -29.11 16 5 H 0.07 3.59 7.74 -2.91 -0.02 3.57 16 6 C 0.01 0.78 5.30 84.65 0.45 1.23 16 7 N -0.92 -53.42 11.32 21.45 0.24 -53.18 16 8 Si 0.97 42.26 29.54 68.60 2.03 44.29 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 11 H -0.26 -10.91 7.11 99.48 0.71 -10.21 16 12 N -0.70 -29.97 5.06 -450.33 -2.28 -32.25 16 13 C 0.51 20.79 6.70 86.38 0.58 21.37 16 14 O -0.57 -27.86 11.79 -4.34 -0.05 -27.92 16 15 C -0.21 -6.00 9.90 23.62 0.23 -5.76 16 16 C -0.03 -0.65 9.81 23.84 0.23 -0.41 16 17 C -0.04 -1.36 4.57 -20.16 -0.09 -1.45 16 18 C -0.17 -4.58 9.79 22.59 0.22 -4.36 16 19 C -0.09 -2.50 10.02 22.21 0.22 -2.28 16 20 C -0.20 -5.94 9.89 22.47 0.22 -5.72 16 21 C 0.18 6.13 6.75 38.17 0.26 6.39 16 22 N -0.88 -25.69 9.09 -51.46 -0.47 -26.16 16 23 C -0.13 -4.66 6.43 22.71 0.15 -4.52 16 24 H 0.06 3.71 6.07 -2.39 -0.01 3.70 16 25 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 26 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 27 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 28 H 0.40 14.41 8.52 -92.70 -0.79 13.62 16 29 H 0.17 3.30 8.06 -2.91 -0.02 3.28 16 30 H 0.18 2.73 8.06 -2.91 -0.02 2.70 16 31 H 0.14 2.96 8.06 -2.91 -0.02 2.93 16 32 H 0.15 2.83 8.06 -2.91 -0.02 2.81 16 33 H 0.13 3.15 8.06 -2.91 -0.02 3.13 16 34 H 0.40 11.70 8.84 -92.70 -0.82 10.88 16 35 H 0.40 9.44 8.84 -92.71 -0.82 8.62 16 36 H 0.09 3.49 6.93 -2.91 -0.02 3.47 16 Total: -1.00 -71.04 307.22 1.64 -69.40 By element: Atomic # 1 Polarization: 43.28 SS G_CDS: -1.31 Total: 41.97 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: 3.48 Total: -16.15 kcal Atomic # 7 Polarization: -109.09 SS G_CDS: -2.51 Total: -111.59 kcal Atomic # 8 Polarization: -27.86 SS G_CDS: -0.05 Total: -27.92 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -71.04 1.64 -69.40 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309980230.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.494 kcal (2) G-P(sol) polarization free energy of solvation -71.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.635 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.400 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds