Wall clock time and date at job start Mon Mar 30 2020 04:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47669 * 2 1 4 4 C 1.50701 * 109.46821 * 239.99570 * 2 1 3 5 5 H 1.07996 * 120.00206 * 274.63121 * 4 2 1 6 6 C 1.37880 * 119.99792 * 94.63619 * 4 2 1 7 7 N 1.31513 * 120.00277 * 184.34341 * 6 4 2 8 8 Si 1.86801 * 119.99923 * 4.34130 * 6 4 2 9 9 H 1.48508 * 109.47087 * 94.22387 * 8 6 4 10 10 H 1.48502 * 109.47207 * 214.22501 * 8 6 4 11 11 H 1.48497 * 109.47273 * 334.22848 * 8 6 4 12 12 N 1.46507 * 109.46733 * 120.00250 * 2 1 3 13 13 C 1.34774 * 119.99628 * 274.99299 * 12 2 1 14 14 O 1.21697 * 120.00085 * 0.02562 * 13 12 2 15 15 C 1.46437 * 119.99651 * 180.02562 * 13 12 2 16 16 C 1.34799 * 119.99526 * 173.41105 * 15 13 12 17 17 C 1.47224 * 120.00435 * 348.54422 * 16 15 13 18 18 C 1.39876 * 120.13673 * 132.08678 * 17 16 15 19 19 C 1.37911 * 119.97769 * 180.02562 * 18 17 16 20 20 C 1.38286 * 120.25537 * 0.02562 * 19 18 17 21 21 C 1.39034 * 120.26790 * 359.95943 * 20 19 18 22 22 N 1.39715 * 119.98928 * 180.02562 * 21 20 19 23 23 C 1.38601 * 120.01966 * 0.04485 * 21 20 19 24 24 H 1.09000 * 109.46993 * 295.08250 * 1 2 3 25 25 H 1.09000 * 109.46584 * 55.07123 * 1 2 3 26 26 H 1.08992 * 109.47289 * 175.07607 * 1 2 3 27 27 H 0.96997 * 120.00442 * 180.02562 * 7 6 4 28 28 H 0.96999 * 119.99726 * 94.99831 * 12 2 1 29 29 H 1.07998 * 119.99962 * 353.41003 * 15 13 12 30 30 H 1.08002 * 119.99613 * 168.54671 * 16 15 13 31 31 H 1.07999 * 120.01115 * 359.73966 * 18 17 16 32 32 H 1.08008 * 119.87376 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.87031 * 179.97438 * 20 19 18 34 34 H 0.96997 * 119.99650 * 180.02562 * 22 21 20 35 35 H 0.96994 * 119.99719 * 0.02562 * 22 21 20 36 36 H 1.08008 * 120.12678 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1411 -1.7850 -1.2270 6 6 2.3530 0.0112 -2.3606 7 7 2.7095 -0.6142 -3.4612 8 14 2.2812 1.8776 -2.3285 9 1 3.6271 2.4194 -2.0114 10 1 1.8460 2.3792 -3.6568 11 1 1.3136 2.3180 -1.2917 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8573 1.1624 2.4118 15 6 2.6356 -0.7085 3.5526 16 6 2.8908 -0.0102 4.6770 17 6 2.9241 1.4612 4.6382 18 6 2.2283 2.2049 5.5970 19 6 2.2612 3.5830 5.5573 20 6 2.9798 4.2347 4.5717 21 6 3.6755 3.5058 3.6137 22 7 4.4000 4.1701 2.6209 23 6 3.6500 2.1203 3.6430 24 1 -0.3633 0.4357 0.9308 25 1 -0.3632 0.5884 -0.8426 26 1 -0.3633 -1.0238 -0.0882 27 1 2.9355 -0.1065 -4.2561 28 1 2.2489 -1.6319 1.1526 29 1 2.7914 -1.7771 3.5335 30 1 3.0710 -0.5300 5.6064 31 1 1.6617 1.7001 6.3655 32 1 1.7230 4.1556 6.2982 33 1 3.0010 5.3141 4.5462 34 1 4.8851 3.6617 1.9522 35 1 4.4180 5.1397 2.6004 36 1 4.1894 1.5523 2.8993 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309980231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:47 Heat of formation + Delta-G solvation = 8.183542 kcal Electronic energy + Delta-G solvation = -19177.285520 eV Core-core repulsion = 16240.589803 eV Total energy + Delta-G solvation = -2936.695717 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.55025 -38.37126 -35.18711 -34.36607 -32.90344 -32.32783 -30.18975 -28.97423 -28.20531 -25.30233 -23.93275 -21.97987 -21.46138 -19.88386 -19.16537 -17.54150 -16.66511 -16.36304 -15.89437 -15.52680 -15.21291 -14.33337 -14.02819 -13.72854 -13.48180 -13.25422 -13.09168 -12.72900 -12.54526 -12.30198 -12.15749 -11.43158 -11.25809 -11.10012 -10.88942 -10.77701 -10.54946 -10.41841 -9.84963 -9.51269 -9.16979 -9.10305 -8.70759 -8.01068 -7.80754 -7.18645 -6.23511 -4.26473 1.11921 1.99046 2.22330 3.22602 3.31872 3.41278 3.97615 4.12584 4.18269 4.27651 4.31749 4.95584 5.13337 5.19893 5.38921 5.43286 5.59994 5.65978 5.88862 6.05255 6.17211 6.36180 6.41009 6.47637 6.57406 6.65126 6.72185 6.80018 6.96100 7.00399 7.18149 7.24593 7.43205 7.61991 7.77358 7.99753 8.18385 8.64736 8.78536 9.11121 9.39460 10.88392 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.021906 B = 0.006507 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.883951 B = 4301.764989 C = 5058.387177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.230 3.770 3 H 0.052 0.948 4 C -0.528 4.528 5 H 0.078 0.922 6 C 0.080 3.920 7 N -0.890 5.890 8 Si 0.873 3.127 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.257 1.257 12 N -0.700 5.700 13 C 0.519 3.481 14 O -0.540 6.540 15 C -0.194 4.194 16 C -0.048 4.048 17 C -0.009 4.009 18 C -0.162 4.162 19 C -0.086 4.086 20 C -0.195 4.195 21 C 0.207 3.793 22 N -0.882 5.882 23 C -0.119 4.119 24 H 0.029 0.971 25 H 0.049 0.951 26 H 0.045 0.955 27 H 0.267 0.733 28 H 0.392 0.608 29 H 0.128 0.872 30 H 0.131 0.869 31 H 0.113 0.887 32 H 0.114 0.886 33 H 0.111 0.889 34 H 0.397 0.603 35 H 0.393 0.607 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.239 4.734 16.067 16.899 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.127 3.873 3 H 0.070 0.930 4 C -0.566 4.566 5 H 0.096 0.904 6 C -0.124 4.124 7 N -0.527 5.527 8 Si 0.700 3.300 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.181 1.181 12 N -0.348 5.348 13 C 0.306 3.694 14 O -0.420 6.420 15 C -0.215 4.215 16 C -0.068 4.068 17 C -0.010 4.010 18 C -0.182 4.182 19 C -0.105 4.105 20 C -0.218 4.218 21 C 0.104 3.896 22 N -0.422 5.422 23 C -0.141 4.141 24 H 0.048 0.952 25 H 0.068 0.932 26 H 0.064 0.936 27 H 0.077 0.923 28 H 0.225 0.775 29 H 0.146 0.854 30 H 0.149 0.851 31 H 0.131 0.869 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.225 0.775 35 H 0.220 0.780 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 2.046 5.568 15.873 16.945 hybrid contribution 0.199 0.507 -0.636 0.837 sum 2.246 6.075 15.237 16.557 Atomic orbital electron populations 1.22204 0.98799 1.00388 0.99141 1.19154 0.90805 0.94495 0.82812 0.92997 1.21043 1.44989 0.95663 0.94945 0.90413 1.24939 0.93729 0.98547 0.95192 1.69888 1.44960 1.36075 1.01775 0.86892 0.79358 0.86058 0.77719 1.20206 1.21148 1.18099 1.46596 1.64558 1.13781 1.09857 1.18503 0.79755 0.87251 0.83897 1.90865 1.51177 1.15111 1.84838 1.23278 1.03437 1.00439 0.94361 1.22293 0.94634 0.92760 0.97138 1.18530 0.96129 0.92091 0.94282 1.20824 1.03276 0.93737 1.00397 1.20586 0.98112 0.94205 0.97615 1.20500 1.04298 0.98677 0.98315 1.17576 0.91631 0.91488 0.88903 1.42408 1.58014 1.08651 1.33080 1.20477 1.03273 0.91888 0.98499 0.95197 0.93185 0.93551 0.92333 0.77539 0.85409 0.85113 0.86886 0.86770 0.87092 0.77526 0.77957 0.87018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.30 9.47 37.16 0.35 -2.95 16 2 C 0.23 5.52 2.17 -69.08 -0.15 5.37 16 3 H 0.05 1.36 4.56 -51.93 -0.24 1.12 16 4 C -0.53 -14.26 9.05 -34.44 -0.31 -14.57 16 5 H 0.08 2.21 8.06 -52.49 -0.42 1.79 16 6 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 7 N -0.89 -26.27 13.96 55.43 0.77 -25.50 16 8 Si 0.87 21.59 27.25 -169.99 -4.63 16.96 16 9 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.26 -6.36 6.42 56.52 0.36 -6.00 16 12 N -0.70 -14.23 5.06 -56.32 -0.29 -14.52 16 13 C 0.52 10.06 6.92 -12.96 -0.09 9.97 16 14 O -0.54 -12.12 12.14 5.19 0.06 -12.05 16 15 C -0.19 -2.84 9.92 -37.50 -0.37 -3.21 16 16 C -0.05 -0.65 9.78 -37.15 -0.36 -1.01 16 17 C -0.01 -0.15 4.34 -105.08 -0.46 -0.60 16 18 C -0.16 -2.33 9.79 -39.09 -0.38 -2.72 16 19 C -0.09 -1.19 10.02 -39.68 -0.40 -1.59 16 20 C -0.20 -2.82 9.89 -39.27 -0.39 -3.21 16 21 C 0.21 3.29 6.75 -83.84 -0.57 2.73 16 22 N -0.88 -11.86 9.09 32.38 0.29 -11.56 16 23 C -0.12 -2.02 6.62 -38.90 -0.26 -2.28 16 24 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 25 H 0.05 1.13 8.12 -51.93 -0.42 0.71 16 26 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 28 H 0.39 7.04 8.57 -40.82 -0.35 6.69 16 29 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 30 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 31 H 0.11 1.36 8.06 -52.49 -0.42 0.94 16 32 H 0.11 1.25 8.06 -52.48 -0.42 0.83 16 33 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 34 H 0.40 5.22 8.84 -40.82 -0.36 4.86 16 35 H 0.39 4.26 8.84 -40.82 -0.36 3.90 16 36 H 0.11 2.00 7.45 -52.48 -0.39 1.60 16 LS Contribution 307.64 15.07 4.64 4.64 Total: -1.00 -32.46 307.64 -7.31 -39.77 By element: Atomic # 1 Polarization: 18.87 SS G_CDS: -4.68 Total: 14.19 kcal Atomic # 6 Polarization: -8.44 SS G_CDS: -3.48 Total: -11.92 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.78 Total: -51.58 kcal Atomic # 8 Polarization: -12.12 SS G_CDS: 0.06 Total: -12.05 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.63 Total: 16.96 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -32.46 -7.31 -39.77 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309980231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.952 kcal (2) G-P(sol) polarization free energy of solvation -32.461 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.769 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds