Wall clock time and date at job start Mon Mar 30 2020 04:47:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47669 * 2 1 4 4 C 1.50701 * 109.46821 * 239.99570 * 2 1 3 5 5 H 1.07996 * 120.00206 * 274.63121 * 4 2 1 6 6 C 1.37880 * 119.99792 * 94.63619 * 4 2 1 7 7 N 1.31513 * 120.00277 * 184.34341 * 6 4 2 8 8 Si 1.86801 * 119.99923 * 4.34130 * 6 4 2 9 9 H 1.48508 * 109.47087 * 94.22387 * 8 6 4 10 10 H 1.48502 * 109.47207 * 214.22501 * 8 6 4 11 11 H 1.48497 * 109.47273 * 334.22848 * 8 6 4 12 12 N 1.46507 * 109.46733 * 120.00250 * 2 1 3 13 13 C 1.34774 * 119.99628 * 274.99299 * 12 2 1 14 14 O 1.21697 * 120.00085 * 0.02562 * 13 12 2 15 15 C 1.46437 * 119.99651 * 180.02562 * 13 12 2 16 16 C 1.34799 * 119.99526 * 173.41105 * 15 13 12 17 17 C 1.47224 * 120.00435 * 348.54422 * 16 15 13 18 18 C 1.39876 * 120.13673 * 132.08678 * 17 16 15 19 19 C 1.37911 * 119.97769 * 180.02562 * 18 17 16 20 20 C 1.38286 * 120.25537 * 0.02562 * 19 18 17 21 21 C 1.39034 * 120.26790 * 359.95943 * 20 19 18 22 22 N 1.39715 * 119.98928 * 180.02562 * 21 20 19 23 23 C 1.38601 * 120.01966 * 0.04485 * 21 20 19 24 24 H 1.09000 * 109.46993 * 295.08250 * 1 2 3 25 25 H 1.09000 * 109.46584 * 55.07123 * 1 2 3 26 26 H 1.08992 * 109.47289 * 175.07607 * 1 2 3 27 27 H 0.96997 * 120.00442 * 180.02562 * 7 6 4 28 28 H 0.96999 * 119.99726 * 94.99831 * 12 2 1 29 29 H 1.07998 * 119.99962 * 353.41003 * 15 13 12 30 30 H 1.08002 * 119.99613 * 168.54671 * 16 15 13 31 31 H 1.07999 * 120.01115 * 359.73966 * 18 17 16 32 32 H 1.08008 * 119.87376 * 179.97438 * 19 18 17 33 33 H 1.07997 * 119.87031 * 179.97438 * 20 19 18 34 34 H 0.96997 * 119.99650 * 180.02562 * 22 21 20 35 35 H 0.96994 * 119.99719 * 0.02562 * 22 21 20 36 36 H 1.08008 * 120.12678 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.1411 -1.7850 -1.2270 6 6 2.3530 0.0112 -2.3606 7 7 2.7095 -0.6142 -3.4612 8 14 2.2812 1.8776 -2.3285 9 1 3.6271 2.4194 -2.0114 10 1 1.8460 2.3792 -3.6568 11 1 1.3136 2.3180 -1.2917 12 7 2.0183 -0.6907 1.1962 13 6 2.1471 -0.0183 2.3571 14 8 1.8573 1.1624 2.4118 15 6 2.6356 -0.7085 3.5526 16 6 2.8908 -0.0102 4.6770 17 6 2.9241 1.4612 4.6382 18 6 2.2283 2.2049 5.5970 19 6 2.2612 3.5830 5.5573 20 6 2.9798 4.2347 4.5717 21 6 3.6755 3.5058 3.6137 22 7 4.4000 4.1701 2.6209 23 6 3.6500 2.1203 3.6430 24 1 -0.3633 0.4357 0.9308 25 1 -0.3632 0.5884 -0.8426 26 1 -0.3633 -1.0238 -0.0882 27 1 2.9355 -0.1065 -4.2561 28 1 2.2489 -1.6319 1.1526 29 1 2.7914 -1.7771 3.5335 30 1 3.0710 -0.5300 5.6064 31 1 1.6617 1.7001 6.3655 32 1 1.7230 4.1556 6.2982 33 1 3.0010 5.3141 4.5462 34 1 4.8851 3.6617 1.9522 35 1 4.4180 5.1397 2.6004 36 1 4.1894 1.5523 2.8993 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309980231.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:47 Heat of formation + Delta-G solvation = -14.633304 kcal Electronic energy + Delta-G solvation = -19178.274932 eV Core-core repulsion = 16240.589803 eV Total energy + Delta-G solvation = -2937.685130 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.88913 -39.68270 -36.82362 -35.64050 -34.34410 -34.05630 -31.82626 -30.26905 -29.32273 -27.34248 -25.23142 -23.29659 -22.67154 -21.58268 -20.65479 -19.12017 -18.15071 -17.59984 -17.31667 -16.95499 -16.59564 -15.76500 -15.66425 -15.11656 -14.80807 -14.63898 -14.52141 -14.39712 -14.12170 -13.78493 -13.35352 -13.22402 -13.02819 -12.79718 -12.45672 -12.31793 -11.94317 -11.88364 -11.50921 -11.21041 -10.86051 -10.69221 -10.51734 -9.66264 -9.02725 -8.40541 -8.30422 -6.46027 -0.02396 0.87350 1.08178 1.24628 1.29701 1.42509 2.24684 2.56276 2.63664 3.05916 3.06325 3.16564 3.90224 4.10799 4.17462 4.36068 4.47626 4.56540 4.61420 4.72601 4.79086 4.84008 4.97828 5.08982 5.11691 5.29410 5.35178 5.42653 5.46998 5.54742 5.72879 5.82272 5.84782 6.12075 6.16997 6.59184 6.66585 7.00799 7.03704 7.20608 7.61587 8.74697 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.021906 B = 0.006507 C = 0.005534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.883951 B = 4301.764989 C = 5058.387177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.236 3.764 3 H 0.031 0.969 4 C -0.524 4.524 5 H 0.055 0.945 6 C 0.032 3.968 7 N -0.931 5.931 8 Si 0.928 3.072 9 H -0.273 1.273 10 H -0.277 1.277 11 H -0.259 1.259 12 N -0.704 5.704 13 C 0.515 3.485 14 O -0.573 6.573 15 C -0.210 4.210 16 C -0.027 4.027 17 C -0.030 4.030 18 C -0.170 4.170 19 C -0.088 4.088 20 C -0.205 4.205 21 C 0.188 3.812 22 N -0.880 5.880 23 C -0.147 4.147 24 H 0.034 0.966 25 H 0.043 0.957 26 H 0.055 0.945 27 H 0.270 0.730 28 H 0.403 0.597 29 H 0.164 0.836 30 H 0.178 0.822 31 H 0.139 0.861 32 H 0.145 0.855 33 H 0.131 0.869 34 H 0.396 0.604 35 H 0.404 0.596 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.797 5.232 18.518 19.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C 0.132 3.868 3 H 0.049 0.951 4 C -0.563 4.563 5 H 0.073 0.927 6 C -0.168 4.168 7 N -0.570 5.570 8 Si 0.753 3.247 9 H -0.198 1.198 10 H -0.203 1.203 11 H -0.184 1.184 12 N -0.353 5.353 13 C 0.305 3.695 14 O -0.455 6.455 15 C -0.230 4.230 16 C -0.046 4.046 17 C -0.031 4.031 18 C -0.190 4.190 19 C -0.107 4.107 20 C -0.228 4.228 21 C 0.084 3.916 22 N -0.420 5.420 23 C -0.170 4.170 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.075 0.925 27 H 0.079 0.921 28 H 0.237 0.763 29 H 0.181 0.819 30 H 0.195 0.805 31 H 0.157 0.843 32 H 0.162 0.838 33 H 0.149 0.851 34 H 0.223 0.777 35 H 0.234 0.766 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.614 6.059 18.342 19.384 hybrid contribution 0.348 0.370 -1.296 1.392 sum 1.962 6.429 17.046 18.323 Atomic orbital electron populations 1.22094 0.97610 1.00970 0.99131 1.18849 0.91611 0.93217 0.83172 0.95135 1.21222 1.44111 0.94799 0.96124 0.92656 1.25600 0.93860 1.02326 0.95007 1.69983 1.46804 1.37640 1.02535 0.86016 0.79313 0.81573 0.77759 1.19822 1.20275 1.18379 1.46356 1.65241 1.14299 1.09373 1.19238 0.78782 0.86930 0.84590 1.90848 1.52484 1.16711 1.85468 1.23243 1.05415 1.02011 0.92324 1.22767 0.91696 0.91782 0.98365 1.18919 0.96212 0.93640 0.94304 1.21194 1.03006 0.94224 1.00537 1.21027 0.97441 0.94505 0.97716 1.20839 1.04029 0.99833 0.98109 1.17871 0.92285 0.91598 0.89819 1.42407 1.57638 1.09309 1.32630 1.20491 1.04805 0.92543 0.99117 0.94687 0.93750 0.92547 0.92073 0.76260 0.81864 0.80524 0.84311 0.83774 0.85110 0.77681 0.76643 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.19 9.47 71.98 0.68 -5.51 16 2 C 0.24 11.33 2.17 44.24 0.10 11.43 16 3 H 0.03 1.61 4.56 -2.39 -0.01 1.60 16 4 C -0.52 -28.66 9.05 25.60 0.23 -28.43 16 5 H 0.06 3.21 8.06 -2.91 -0.02 3.19 16 6 C 0.03 1.83 5.47 84.66 0.46 2.29 16 7 N -0.93 -55.80 13.96 21.45 0.30 -55.50 16 8 Si 0.93 45.12 27.25 68.60 1.87 46.99 16 9 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 10 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 11 H -0.26 -12.62 6.42 99.48 0.64 -11.98 16 12 N -0.70 -28.31 5.06 -450.31 -2.28 -30.60 16 13 C 0.51 19.53 6.92 86.38 0.60 20.13 16 14 O -0.57 -25.57 12.14 -4.34 -0.05 -25.63 16 15 C -0.21 -5.62 9.92 23.62 0.23 -5.38 16 16 C -0.03 -0.64 9.78 23.84 0.23 -0.40 16 17 C -0.03 -0.89 4.34 -20.16 -0.09 -0.97 16 18 C -0.17 -4.40 9.79 22.59 0.22 -4.18 16 19 C -0.09 -2.20 10.02 22.20 0.22 -1.98 16 20 C -0.21 -5.60 9.89 22.47 0.22 -5.37 16 21 C 0.19 5.89 6.75 38.16 0.26 6.15 16 22 N -0.88 -23.53 9.09 -51.46 -0.47 -23.99 16 23 C -0.15 -4.97 6.62 22.71 0.15 -4.82 16 24 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.04 1.98 8.12 -2.39 -0.02 1.96 16 26 H 0.06 2.35 8.14 -2.39 -0.02 2.33 16 27 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 28 H 0.40 14.23 8.57 -92.71 -0.79 13.44 16 29 H 0.16 3.14 8.06 -2.91 -0.02 3.11 16 30 H 0.18 2.53 8.06 -2.91 -0.02 2.51 16 31 H 0.14 2.78 8.06 -2.91 -0.02 2.76 16 32 H 0.14 2.62 8.06 -2.91 -0.02 2.60 16 33 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 34 H 0.40 10.61 8.84 -92.71 -0.82 9.79 16 35 H 0.40 8.52 8.84 -92.71 -0.82 7.70 16 36 H 0.09 3.32 7.45 -2.91 -0.02 3.29 16 Total: -1.00 -70.77 307.64 1.51 -69.27 By element: Atomic # 1 Polarization: 37.89 SS G_CDS: -1.38 Total: 36.51 kcal Atomic # 6 Polarization: -20.58 SS G_CDS: 3.52 Total: -17.05 kcal Atomic # 7 Polarization: -107.64 SS G_CDS: -2.45 Total: -110.09 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.05 Total: -25.63 kcal Atomic # 14 Polarization: 45.12 SS G_CDS: 1.87 Total: 46.99 kcal Total: -70.77 1.51 -69.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309980231.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.632 kcal (2) G-P(sol) polarization free energy of solvation -70.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds