Wall clock time and date at job start Mon Mar 30 2020 04:09:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99832 * 2 1 4 4 H 1.48503 * 109.46926 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47033 * 299.99827 * 3 2 1 6 6 H 1.48497 * 109.46927 * 60.00383 * 3 2 1 7 7 C 1.37881 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00001 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99683 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46778 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99999 * 90.00466 * 10 9 7 12 12 O 1.21621 * 120.00228 * 184.74051 * 11 10 9 13 13 C 1.47069 * 119.99611 * 4.74095 * 11 10 9 14 14 C 1.33017 * 119.99680 * 186.61417 * 13 11 10 15 15 C 1.50700 * 119.99737 * 17.89755 * 14 13 11 16 16 N 1.46905 * 109.46756 * 129.79753 * 15 14 13 17 17 C 1.39835 * 120.00542 * 269.99879 * 10 9 7 18 18 C 1.38901 * 120.07070 * 113.16331 * 17 10 9 19 19 C 1.38106 * 119.92297 * 179.77055 * 18 17 10 20 20 C 1.38291 * 120.07396 * 0.48882 * 19 18 17 21 21 C 1.38280 * 120.14435 * 359.76935 * 20 19 18 22 22 C 1.38107 * 120.07554 * 359.97438 * 21 20 19 23 23 H 0.96997 * 120.00689 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46647 * 60.00456 * 9 7 2 25 25 H 1.08999 * 109.47165 * 300.00215 * 9 7 2 26 26 H 1.07998 * 120.00159 * 6.89439 * 13 11 10 27 27 H 1.07996 * 120.00046 * 197.89749 * 14 13 11 28 28 H 1.09004 * 109.46943 * 249.79474 * 15 14 13 29 29 H 1.09001 * 109.47632 * 9.79467 * 15 14 13 30 30 H 1.00907 * 110.99697 * 179.97438 * 16 15 14 31 31 H 1.00890 * 111.00016 * 303.94854 * 16 15 14 32 32 H 1.07994 * 120.03630 * 359.97438 * 18 17 10 33 33 H 1.07998 * 119.96340 * 180.25987 * 19 18 17 34 34 H 1.08001 * 119.92523 * 179.74343 * 20 19 18 35 35 H 1.08003 * 119.96340 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.04015 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0015 11 6 2.6419 -4.1244 1.1686 12 8 3.4964 -4.9898 1.1702 13 6 2.0873 -3.6362 2.4402 14 6 2.6101 -4.0432 3.5936 15 6 3.9847 -4.6604 3.6217 16 7 4.7961 -4.0017 4.6541 17 6 2.6566 -4.1447 -1.2096 18 6 3.9885 -4.0024 -1.5770 19 6 4.4342 -4.5331 -2.7715 20 6 3.5538 -5.1969 -3.6062 21 6 2.2260 -5.3356 -3.2459 22 6 1.7749 -4.8118 -2.0503 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5575 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 1.2527 -2.9508 2.4377 27 1 2.0495 -3.9314 4.5099 28 1 3.9011 -5.7233 3.8485 29 1 4.4603 -4.5326 2.6493 30 1 5.7231 -4.3983 4.6931 31 1 4.8350 -3.0051 4.5021 32 1 4.6755 -3.4801 -0.9277 33 1 5.4706 -4.4265 -3.0558 34 1 3.9040 -5.6074 -4.5418 35 1 1.5409 -5.8542 -3.9002 36 1 0.7377 -4.9201 -1.7696 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310136747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:44 Heat of formation + Delta-G solvation = 22.332390 kcal Electronic energy + Delta-G solvation = -19182.059424 eV Core-core repulsion = 16245.977247 eV Total energy + Delta-G solvation = -2936.082177 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -39.97168 -38.15602 -35.53401 -34.69602 -32.69041 -31.61335 -30.52789 -29.50513 -27.17002 -25.03289 -23.21255 -22.68288 -22.01163 -20.50764 -18.09855 -17.12690 -16.59782 -16.34370 -15.73880 -15.27187 -14.99216 -14.60687 -14.19142 -14.02853 -13.69054 -13.04596 -12.97623 -12.78470 -12.46146 -12.25212 -12.13994 -11.69619 -11.29656 -11.18294 -11.06211 -10.82421 -10.76651 -10.24055 -9.85670 -9.40106 -8.91344 -8.63283 -8.60471 -8.52528 -8.25493 -7.64297 -6.23867 -4.30855 1.62735 1.81064 1.88703 3.18736 3.27261 3.31151 3.74956 3.83532 4.19529 4.31417 4.87989 5.09983 5.28128 5.30471 5.34509 5.36845 5.46537 5.80515 5.85162 5.95582 6.00091 6.01915 6.25255 6.39340 6.63035 6.69331 6.79172 6.83475 6.86135 6.94580 7.12514 7.22726 7.30576 7.56508 7.63147 7.72946 7.97155 8.14914 8.71406 8.89689 9.36488 10.83150 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.009626 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.757749 B = 2908.193341 C = 4737.664355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.898 3.102 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.281 1.281 7 C -0.535 4.535 8 H 0.061 0.939 9 C 0.237 3.763 10 N -0.555 5.555 11 C 0.547 3.453 12 O -0.557 6.557 13 C -0.189 4.189 14 C -0.082 4.082 15 C 0.064 3.936 16 N -0.855 5.855 17 C 0.173 3.827 18 C -0.103 4.103 19 C -0.115 4.115 20 C -0.136 4.136 21 C -0.114 4.114 22 C -0.126 4.126 23 H 0.266 0.734 24 H 0.039 0.961 25 H 0.046 0.954 26 H 0.144 0.856 27 H 0.124 0.876 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.340 0.660 31 H 0.340 0.660 32 H 0.118 0.882 33 H 0.118 0.882 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.735 -7.392 -0.377 8.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.725 3.275 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.207 1.207 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.119 3.881 10 N -0.281 5.281 11 C 0.340 3.660 12 O -0.439 6.439 13 C -0.211 4.211 14 C -0.102 4.102 15 C -0.065 4.065 16 N -0.384 5.384 17 C 0.082 3.918 18 C -0.123 4.123 19 C -0.133 4.133 20 C -0.154 4.154 21 C -0.133 4.133 22 C -0.145 4.145 23 H 0.075 0.925 24 H 0.057 0.943 25 H 0.064 0.936 26 H 0.162 0.838 27 H 0.142 0.858 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.151 0.849 31 H 0.152 0.848 32 H 0.136 0.864 33 H 0.136 0.864 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 4.423 -7.969 0.138 9.115 hybrid contribution 0.788 1.540 -0.820 1.915 sum 5.211 -6.428 -0.682 8.303 Atomic orbital electron populations 1.69916 1.05970 1.27332 1.49692 1.24917 0.94881 0.99288 0.94645 0.86437 0.80115 0.83133 0.77807 1.19687 1.20774 1.20717 1.21455 0.93614 0.90237 1.52058 0.92086 1.19642 0.87347 0.82033 0.99082 1.45883 1.45595 1.34081 1.02581 1.18686 0.81152 0.81621 0.84522 1.90622 1.32123 1.33692 1.87474 1.22924 1.04715 1.01681 0.91738 1.23518 0.95296 0.94172 0.97253 1.21389 0.91706 0.98118 0.95251 1.58665 1.18556 1.08772 1.52421 1.17595 0.92519 0.94431 0.87241 1.21221 0.95503 0.99188 0.96391 1.20944 0.99364 0.98653 0.94388 1.21012 0.93765 1.00952 0.99664 1.20895 0.95779 1.00322 0.96281 1.21213 0.99854 0.98236 0.95221 0.92471 0.94323 0.93602 0.83850 0.85814 0.90571 0.90407 0.84852 0.84839 0.86383 0.86374 0.86536 0.86234 0.86037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.32 13.29 55.43 0.74 -23.59 16 2 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 3 Si 0.90 20.60 29.54 -169.99 -5.02 15.58 16 4 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 7 C -0.54 -13.97 9.39 -34.44 -0.32 -14.29 16 8 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 9 C 0.24 5.65 4.96 -5.19 -0.03 5.62 16 10 N -0.56 -12.03 2.51 -116.06 -0.29 -12.32 16 11 C 0.55 11.47 7.26 -12.68 -0.09 11.38 16 12 O -0.56 -12.15 12.97 5.26 0.07 -12.08 16 13 C -0.19 -3.51 9.24 -37.81 -0.35 -3.86 16 14 C -0.08 -1.32 9.81 -36.12 -0.35 -1.68 16 15 C 0.06 1.01 6.28 -4.97 -0.03 0.98 16 16 N -0.85 -11.46 9.61 -11.40 -0.11 -11.57 16 17 C 0.17 3.55 4.87 -83.72 -0.41 3.15 16 18 C -0.10 -1.99 9.30 -39.38 -0.37 -2.35 16 19 C -0.11 -1.83 10.04 -39.61 -0.40 -2.23 16 20 C -0.14 -1.98 10.04 -39.55 -0.40 -2.37 16 21 C -0.11 -1.74 10.04 -39.61 -0.40 -2.14 16 22 C -0.13 -2.27 9.63 -39.39 -0.38 -2.65 16 23 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 24 H 0.04 0.97 7.82 -51.93 -0.41 0.57 16 25 H 0.05 1.09 5.87 -51.93 -0.30 0.79 16 26 H 0.14 2.71 6.10 -52.49 -0.32 2.39 16 27 H 0.12 1.74 8.06 -52.49 -0.42 1.31 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.76 16 29 H 0.08 1.43 5.15 -51.93 -0.27 1.16 16 30 H 0.34 3.88 9.08 -39.29 -0.36 3.52 16 31 H 0.34 4.44 8.98 -39.30 -0.35 4.09 16 32 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 33 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.12 1.33 8.06 -52.49 -0.42 0.90 16 35 H 0.12 1.46 8.06 -52.48 -0.42 1.03 16 36 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 LS Contribution 311.15 15.07 4.69 4.69 Total: -1.00 -28.91 311.15 -8.06 -36.97 By element: Atomic # 1 Polarization: 15.65 SS G_CDS: -4.51 Total: 11.14 kcal Atomic # 6 Polarization: -5.19 SS G_CDS: -3.62 Total: -8.81 kcal Atomic # 7 Polarization: -47.81 SS G_CDS: 0.34 Total: -47.48 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.08 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -5.02 Total: 15.58 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -28.91 -8.06 -36.97 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310136747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.302 kcal (2) G-P(sol) polarization free energy of solvation -28.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.059 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.970 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds