Wall clock time and date at job start Mon Mar 30 2020 04:09:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86803 * 119.99832 * 2 1 4 4 H 1.48503 * 109.46926 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47033 * 299.99827 * 3 2 1 6 6 H 1.48497 * 109.46927 * 60.00383 * 3 2 1 7 7 C 1.37881 * 120.00344 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00001 * 180.02562 * 7 2 1 9 9 C 1.50706 * 119.99683 * 359.97438 * 7 2 1 10 10 N 1.46496 * 109.46778 * 179.97438 * 9 7 2 11 11 C 1.34783 * 119.99999 * 90.00466 * 10 9 7 12 12 O 1.21621 * 120.00228 * 184.74051 * 11 10 9 13 13 C 1.47069 * 119.99611 * 4.74095 * 11 10 9 14 14 C 1.33017 * 119.99680 * 186.61417 * 13 11 10 15 15 C 1.50700 * 119.99737 * 17.89755 * 14 13 11 16 16 N 1.46905 * 109.46756 * 129.79753 * 15 14 13 17 17 C 1.39835 * 120.00542 * 269.99879 * 10 9 7 18 18 C 1.38901 * 120.07070 * 113.16331 * 17 10 9 19 19 C 1.38106 * 119.92297 * 179.77055 * 18 17 10 20 20 C 1.38291 * 120.07396 * 0.48882 * 19 18 17 21 21 C 1.38280 * 120.14435 * 359.76935 * 20 19 18 22 22 C 1.38107 * 120.07554 * 359.97438 * 21 20 19 23 23 H 0.96997 * 120.00689 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46647 * 60.00456 * 9 7 2 25 25 H 1.08999 * 109.47165 * 300.00215 * 9 7 2 26 26 H 1.07998 * 120.00159 * 6.89439 * 13 11 10 27 27 H 1.07996 * 120.00046 * 197.89749 * 14 13 11 28 28 H 1.09004 * 109.46943 * 249.79474 * 15 14 13 29 29 H 1.09001 * 109.47632 * 9.79467 * 15 14 13 30 30 H 1.00907 * 110.99697 * 179.97438 * 16 15 14 31 31 H 1.00890 * 111.00016 * 303.94854 * 16 15 14 32 32 H 1.07994 * 120.03630 * 359.97438 * 18 17 10 33 33 H 1.07998 * 119.96340 * 180.25987 * 19 18 17 34 34 H 1.08001 * 119.92523 * 179.74343 * 20 19 18 35 35 H 1.08003 * 119.96340 * 179.97438 * 21 20 19 36 36 H 1.08001 * 120.04015 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8903 2.3964 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 7 2.2031 -3.6126 0.0015 11 6 2.6419 -4.1244 1.1686 12 8 3.4964 -4.9898 1.1702 13 6 2.0873 -3.6362 2.4402 14 6 2.6101 -4.0432 3.5936 15 6 3.9847 -4.6604 3.6217 16 7 4.7961 -4.0017 4.6541 17 6 2.6566 -4.1447 -1.2096 18 6 3.9885 -4.0024 -1.5770 19 6 4.4342 -4.5331 -2.7715 20 6 3.5538 -5.1969 -3.6062 21 6 2.2260 -5.3356 -3.2459 22 6 1.7749 -4.8118 -2.0503 23 1 -0.4851 0.8400 0.0004 24 1 0.6241 -2.5575 -0.8881 25 1 0.6247 -2.5563 0.8919 26 1 1.2527 -2.9508 2.4377 27 1 2.0495 -3.9314 4.5099 28 1 3.9011 -5.7233 3.8485 29 1 4.4603 -4.5326 2.6493 30 1 5.7231 -4.3983 4.6931 31 1 4.8350 -3.0051 4.5021 32 1 4.6755 -3.4801 -0.9277 33 1 5.4706 -4.4265 -3.0558 34 1 3.9040 -5.6074 -4.5418 35 1 1.5409 -5.8542 -3.9002 36 1 0.7377 -4.9201 -1.7696 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310136747.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:09:43 Heat of formation + Delta-G solvation = 4.475950 kcal Electronic energy + Delta-G solvation = -19182.833737 eV Core-core repulsion = 16245.977247 eV Total energy + Delta-G solvation = -2936.856490 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.50740 -39.54292 -37.03012 -36.19005 -34.62633 -32.94869 -31.83832 -30.96253 -29.03036 -26.39333 -25.08314 -24.05817 -23.38144 -21.89428 -19.61864 -18.78102 -18.46722 -17.80913 -17.03564 -16.78256 -16.43850 -16.22330 -15.72049 -15.38344 -15.10978 -14.50116 -14.34032 -14.30556 -14.12917 -13.67857 -13.58787 -13.38570 -13.00553 -12.77582 -12.55383 -12.46503 -12.19646 -12.07288 -11.72936 -10.94974 -10.64386 -10.34260 -10.09860 -9.84892 -9.52497 -9.19367 -8.25427 -6.40329 0.22625 0.48387 0.51453 1.36381 1.38987 1.49724 2.15966 2.28609 2.39971 2.87367 3.04495 3.68562 3.85660 4.02755 4.03957 4.09214 4.26086 4.47698 4.51366 4.59301 4.65936 4.71012 4.84256 4.99135 5.07379 5.11846 5.33717 5.41078 5.46944 5.57793 5.57966 5.66762 5.80882 5.98507 6.12122 6.18717 6.45133 6.53423 6.71545 7.22977 7.33841 8.80254 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.010541 B = 0.009626 C = 0.005909 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2655.757749 B = 2908.193341 C = 4737.664355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.024 3.976 3 Si 0.958 3.042 4 H -0.274 1.274 5 H -0.277 1.277 6 H -0.272 1.272 7 C -0.545 4.545 8 H 0.046 0.954 9 C 0.254 3.746 10 N -0.559 5.559 11 C 0.540 3.460 12 O -0.572 6.572 13 C -0.219 4.219 14 C -0.051 4.051 15 C 0.068 3.932 16 N -0.846 5.846 17 C 0.131 3.869 18 C -0.130 4.130 19 C -0.113 4.113 20 C -0.125 4.125 21 C -0.107 4.107 22 C -0.145 4.145 23 H 0.270 0.730 24 H 0.018 0.982 25 H 0.041 0.959 26 H 0.136 0.864 27 H 0.153 0.847 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.353 0.647 31 H 0.343 0.657 32 H 0.098 0.902 33 H 0.148 0.852 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.618 -7.795 -0.956 9.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.177 4.177 3 Si 0.783 3.217 4 H -0.199 1.199 5 H -0.202 1.202 6 H -0.197 1.197 7 C -0.583 4.583 8 H 0.064 0.936 9 C 0.135 3.865 10 N -0.285 5.285 11 C 0.334 3.666 12 O -0.456 6.456 13 C -0.240 4.240 14 C -0.071 4.071 15 C -0.061 4.061 16 N -0.377 5.377 17 C 0.041 3.959 18 C -0.150 4.150 19 C -0.131 4.131 20 C -0.142 4.142 21 C -0.126 4.126 22 C -0.164 4.164 23 H 0.079 0.921 24 H 0.036 0.964 25 H 0.059 0.941 26 H 0.154 0.846 27 H 0.171 0.829 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.166 0.834 31 H 0.155 0.845 32 H 0.116 0.884 33 H 0.166 0.834 34 H 0.179 0.821 35 H 0.174 0.826 36 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 5.320 -8.383 -0.442 9.938 hybrid contribution 0.568 1.569 -0.655 1.792 sum 5.888 -6.814 -1.096 9.072 Atomic orbital electron populations 1.69997 1.07082 1.28297 1.50247 1.25624 0.95653 1.02217 0.94211 0.85510 0.78668 0.79386 0.78157 1.19870 1.20233 1.19732 1.21579 0.92979 0.91577 1.52172 0.93570 1.19247 0.87316 0.82286 0.97677 1.45799 1.45334 1.33721 1.03668 1.19078 0.80951 0.81485 0.85059 1.90599 1.32826 1.34411 1.87741 1.22787 1.05661 1.03949 0.91646 1.23841 0.94977 0.90929 0.97313 1.21241 0.91586 0.98700 0.94593 1.58643 1.19304 1.08965 1.50805 1.18009 0.93738 0.96547 0.87629 1.21263 0.94927 1.00830 0.97967 1.21325 1.01216 0.97571 0.93030 1.21527 0.93017 0.99105 1.00583 1.21355 0.96975 0.99002 0.95230 1.21402 0.99638 0.99005 0.96387 0.92115 0.96350 0.94096 0.84641 0.82949 0.89890 0.93143 0.83377 0.84468 0.88413 0.83438 0.82128 0.82592 0.86226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.81 13.29 21.45 0.28 -50.53 16 2 C 0.02 1.26 5.46 84.66 0.46 1.72 16 3 Si 0.96 42.49 29.54 68.60 2.03 44.52 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.00 7.11 99.48 0.71 -11.30 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.54 -29.43 9.39 25.60 0.24 -29.19 16 8 H 0.05 2.58 7.81 -2.91 -0.02 2.56 16 9 C 0.25 12.73 4.96 85.64 0.42 13.15 16 10 N -0.56 -25.55 2.51 -639.36 -1.60 -27.15 16 11 C 0.54 23.69 7.26 86.56 0.63 24.32 16 12 O -0.57 -25.96 12.97 -4.10 -0.05 -26.01 16 13 C -0.22 -8.37 9.24 23.42 0.22 -8.15 16 14 C -0.05 -1.60 9.81 24.52 0.24 -1.35 16 15 C 0.07 2.11 6.28 85.56 0.54 2.65 16 16 N -0.85 -21.37 9.61 -189.99 -1.83 -23.20 16 17 C 0.13 5.59 4.87 38.18 0.19 5.78 16 18 C -0.13 -5.14 9.30 22.40 0.21 -4.94 16 19 C -0.11 -3.43 10.04 22.25 0.22 -3.20 16 20 C -0.12 -3.22 10.04 22.29 0.22 -3.00 16 21 C -0.11 -3.03 10.04 22.25 0.22 -2.81 16 22 C -0.14 -5.29 9.63 22.40 0.22 -5.08 16 23 H 0.27 14.04 8.31 -92.71 -0.77 13.27 16 24 H 0.02 0.98 7.82 -2.39 -0.02 0.96 16 25 H 0.04 2.07 5.87 -2.39 -0.01 2.05 16 26 H 0.14 5.35 6.10 -2.91 -0.02 5.34 16 27 H 0.15 3.94 8.06 -2.91 -0.02 3.92 16 28 H 0.08 2.48 8.14 -2.39 -0.02 2.46 16 29 H 0.05 1.89 5.15 -2.39 -0.01 1.88 16 30 H 0.35 7.49 9.08 -89.69 -0.81 6.67 16 31 H 0.34 8.49 8.98 -89.70 -0.81 7.69 16 32 H 0.10 4.11 8.06 -2.91 -0.02 4.09 16 33 H 0.15 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.16 2.78 8.06 -2.91 -0.02 2.76 16 35 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 36 H 0.12 4.25 8.06 -2.91 -0.02 4.23 16 Total: -1.00 -63.90 311.15 2.34 -61.56 By element: Atomic # 1 Polarization: 31.42 SS G_CDS: -0.52 Total: 30.91 kcal Atomic # 6 Polarization: -14.13 SS G_CDS: 4.03 Total: -10.10 kcal Atomic # 7 Polarization: -97.73 SS G_CDS: -3.14 Total: -100.87 kcal Atomic # 8 Polarization: -25.96 SS G_CDS: -0.05 Total: -26.01 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -63.90 2.34 -61.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310136747.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.034 kcal (2) G-P(sol) polarization free energy of solvation -63.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.133 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds