Wall clock time and date at job start Mon Mar 30 2020 04:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 119.99708 * 2 1 4 4 N 1.46907 * 109.47074 * 124.99548 * 3 2 1 5 5 C 1.46901 * 110.99707 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46765 * 180.02562 * 5 4 3 7 7 O 1.21281 * 119.99966 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99611 * 180.02562 * 6 5 4 9 9 C 1.39939 * 119.99522 * 174.89059 * 8 6 5 10 10 C 1.39295 * 119.94562 * 145.78068 * 9 8 6 11 11 C 1.38482 * 120.42847 * 179.97438 * 10 9 8 12 12 C 1.37690 * 120.32160 * 359.97438 * 11 10 9 13 13 C 1.40742 * 119.88304 * 0.02562 * 12 11 10 14 14 C 1.41413 * 120.20605 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00078 * 205.17618 * 14 13 12 16 16 C 1.39927 * 119.99961 * 25.18243 * 14 13 12 17 17 N 1.30837 * 120.00511 * 16.78771 * 16 14 13 18 18 Si 1.86801 * 119.99944 * 196.78962 * 16 14 13 19 19 H 1.48502 * 109.47124 * 60.00092 * 18 16 14 20 20 H 1.48501 * 109.47283 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47156 * 300.00000 * 18 16 14 22 22 C 1.38236 * 119.94779 * 325.50877 * 9 8 6 23 23 H 1.07999 * 120.00513 * 0.02562 * 1 2 3 24 24 H 1.08006 * 119.99747 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.00513 * 179.97438 * 2 1 3 26 26 H 1.08991 * 109.47251 * 4.99622 * 3 2 1 27 27 H 1.09000 * 109.47133 * 244.99321 * 3 2 1 28 28 H 1.00907 * 110.99842 * 56.04664 * 4 3 2 29 29 H 1.08999 * 109.47436 * 299.99957 * 5 4 3 30 30 H 1.08993 * 109.47036 * 60.00289 * 5 4 3 31 31 H 0.97001 * 120.00131 * 354.88572 * 8 6 5 32 32 H 1.07998 * 119.78584 * 359.97438 * 10 9 8 33 33 H 1.08003 * 119.84028 * 180.02562 * 11 10 9 34 34 H 1.07995 * 120.05579 * 179.97438 * 12 11 10 35 35 H 0.96990 * 120.00342 * 180.02562 * 17 16 14 36 36 H 1.07997 * 120.16143 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9961 1.3321 1.1346 5 6 3.7502 2.5924 1.1663 6 6 4.6949 2.5831 2.3405 7 8 4.7362 1.6211 3.0780 8 7 5.4937 3.6439 2.5711 9 6 6.2925 3.6816 3.7195 10 6 7.5462 4.2871 3.6748 11 6 8.3447 4.3306 4.8054 12 6 7.9073 3.7757 5.9872 13 6 6.6428 3.1605 6.0473 14 6 6.1870 2.5879 7.2573 15 1 5.4561 1.7932 7.2369 16 6 6.6829 3.0512 8.4810 17 7 7.2996 4.2034 8.5430 18 14 6.4644 2.0245 10.0262 19 1 7.1293 0.7091 9.8445 20 1 7.0745 2.7316 11.1807 21 1 5.0165 1.8163 10.2815 22 6 5.8339 3.1229 4.8978 23 1 -0.5401 0.9353 -0.0004 24 1 -0.5400 -0.9354 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3585 2.1316 0.0895 27 1 2.6213 1.4026 -0.9313 28 1 3.6192 0.5388 1.1094 29 1 4.3198 2.6984 0.2431 30 1 3.0572 3.4280 1.2637 31 1 5.5150 4.3810 1.9410 32 1 7.8977 4.7255 2.7526 33 1 9.3150 4.8029 4.7602 34 1 8.5337 3.8117 6.8661 35 1 7.6436 4.5244 9.3911 36 1 4.8600 2.6575 4.9346 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313432012.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:46 Heat of formation + Delta-G solvation = 8.054150 kcal Electronic energy + Delta-G solvation = -18235.621853 eV Core-core repulsion = 15298.920525 eV Total energy + Delta-G solvation = -2936.701328 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.68503 -37.38600 -36.40868 -34.40023 -33.16866 -32.94267 -29.79095 -28.89135 -26.98033 -25.26716 -23.92900 -21.44916 -20.81663 -20.27696 -19.43618 -17.71698 -16.85127 -16.07293 -15.58041 -15.33334 -15.17859 -14.66989 -14.39655 -14.36148 -13.47240 -13.18364 -12.93369 -12.81882 -12.29297 -12.23216 -11.88409 -11.61569 -11.23558 -11.15183 -11.07744 -10.87182 -10.46011 -10.12634 -9.73773 -9.63922 -9.35932 -9.03373 -8.94359 -8.49846 -7.42091 -6.88892 -6.67986 -4.30487 2.05246 2.62663 2.88257 3.11277 3.15526 3.24077 3.39506 3.52673 3.99674 4.32007 4.67336 4.69299 4.93608 5.02820 5.16273 5.25990 5.32028 5.46715 5.67034 5.75454 6.26575 6.39586 6.41561 6.53222 6.72438 6.80210 7.05840 7.08379 7.11318 7.22453 7.29100 7.60315 7.76387 8.00137 8.13136 8.21066 8.30359 8.66450 8.77879 8.97615 9.02023 10.24999 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.022614 B = 0.004222 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.857189 B = 6630.418279 C = 7720.941794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.149 4.149 3 C 0.085 3.915 4 N -0.669 5.669 5 C 0.043 3.957 6 C 0.501 3.499 7 O -0.503 6.503 8 N -0.671 5.671 9 C 0.152 3.848 10 C -0.263 4.263 11 C -0.093 4.093 12 C -0.173 4.173 13 C 0.120 3.880 14 C -0.459 4.459 15 H 0.078 0.922 16 C 0.076 3.924 17 N -0.796 5.796 18 Si 0.909 3.091 19 H -0.263 1.263 20 H -0.279 1.279 21 H -0.265 1.265 22 C -0.210 4.210 23 H 0.096 0.904 24 H 0.098 0.902 25 H 0.109 0.891 26 H 0.077 0.923 27 H 0.038 0.962 28 H 0.353 0.647 29 H 0.057 0.943 30 H 0.101 0.899 31 H 0.397 0.603 32 H 0.088 0.912 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.280 0.720 36 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.669 -1.544 -13.828 15.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.168 4.168 3 C -0.043 4.043 4 N -0.302 5.302 5 C -0.090 4.090 6 C 0.287 3.713 7 O -0.376 6.376 8 N -0.315 5.315 9 C 0.060 3.940 10 C -0.284 4.284 11 C -0.112 4.112 12 C -0.193 4.193 13 C 0.117 3.883 14 C -0.488 4.488 15 H 0.096 0.904 16 C -0.141 4.141 17 N -0.422 5.422 18 Si 0.733 3.267 19 H -0.188 1.188 20 H -0.204 1.204 21 H -0.190 1.190 22 C -0.231 4.231 23 H 0.115 0.885 24 H 0.116 0.884 25 H 0.127 0.873 26 H 0.096 0.904 27 H 0.056 0.944 28 H 0.173 0.827 29 H 0.075 0.925 30 H 0.119 0.881 31 H 0.231 0.769 32 H 0.106 0.894 33 H 0.109 0.891 34 H 0.137 0.863 35 H 0.091 0.909 36 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -7.046 -1.873 -12.681 14.628 hybrid contribution 0.551 -0.018 -0.363 0.660 sum -6.495 -1.891 -13.044 14.694 Atomic orbital electron populations 1.23806 0.95784 1.01901 1.00552 1.22808 0.96124 0.97988 0.99857 1.21113 0.95319 0.96427 0.91482 1.60145 1.22408 1.03839 1.43839 1.21807 0.96074 0.94985 0.96123 1.20463 0.81167 0.83004 0.86711 1.90762 1.66158 1.33246 1.47455 1.43445 1.42781 1.21094 1.24220 1.17423 0.90314 1.01337 0.84906 1.20030 0.95391 1.14716 0.98308 1.20458 0.97538 0.99876 0.93300 1.21349 0.97013 1.04199 0.96691 1.17486 0.90222 0.88902 0.91669 1.19566 1.21822 1.17426 0.90012 0.90358 1.25900 0.93034 0.94190 1.01004 1.69820 1.28496 1.15887 1.27973 0.86357 0.79677 0.80824 0.79801 1.18802 1.20395 1.18979 1.20989 1.00456 1.09621 0.92029 0.88524 0.88364 0.87270 0.90447 0.94376 0.82746 0.92549 0.88101 0.76919 0.89377 0.89087 0.86329 0.90913 0.87561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.56 14.32 29.02 0.42 -1.15 16 2 C -0.15 -1.41 9.78 -36.02 -0.35 -1.76 16 3 C 0.09 0.82 6.12 -4.97 -0.03 0.79 16 4 N -0.67 -8.52 6.12 -116.34 -0.71 -9.23 16 5 C 0.04 0.52 6.17 -4.97 -0.03 0.49 16 6 C 0.50 8.84 7.59 -10.98 -0.08 8.76 16 7 O -0.50 -11.33 13.96 5.56 0.08 -11.25 16 8 N -0.67 -11.87 5.34 -9.91 -0.05 -11.92 16 9 C 0.15 3.48 6.25 -83.76 -0.52 2.96 16 10 C -0.26 -5.85 9.97 -39.10 -0.39 -6.24 16 11 C -0.09 -2.19 10.02 -39.69 -0.40 -2.59 16 12 C -0.17 -4.61 8.69 -38.84 -0.34 -4.95 16 13 C 0.12 3.37 5.57 -106.85 -0.59 2.77 16 14 C -0.46 -12.83 9.05 -37.74 -0.34 -13.18 16 15 H 0.08 2.16 7.90 -52.49 -0.41 1.75 16 16 C 0.08 1.97 5.16 -17.34 -0.09 1.88 16 17 N -0.80 -21.02 10.94 55.55 0.61 -20.41 16 18 Si 0.91 19.40 29.59 -169.99 -5.03 14.37 16 19 H -0.26 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 21 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 22 C -0.21 -5.54 8.39 -38.69 -0.32 -5.87 16 23 H 0.10 0.76 7.84 -52.49 -0.41 0.35 16 24 H 0.10 0.73 8.06 -52.48 -0.42 0.31 16 25 H 0.11 0.98 8.06 -52.49 -0.42 0.55 16 26 H 0.08 0.70 7.79 -51.93 -0.40 0.30 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.35 4.63 8.42 -39.29 -0.33 4.30 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.40 5.31 8.82 -40.82 -0.36 4.95 16 32 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 33 H 0.09 1.90 8.06 -52.48 -0.42 1.47 16 34 H 0.12 3.24 6.17 -52.49 -0.32 2.91 16 35 H 0.28 6.72 8.30 -40.82 -0.34 6.38 16 36 H 0.11 2.92 6.48 -52.49 -0.34 2.58 16 LS Contribution 312.71 15.07 4.71 4.71 Total: -1.00 -31.65 312.71 -8.16 -39.80 By element: Atomic # 1 Polarization: 16.70 SS G_CDS: -4.68 Total: 12.02 kcal Atomic # 6 Polarization: -15.00 SS G_CDS: -3.08 Total: -18.08 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -0.16 Total: -41.57 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 19.40 SS G_CDS: -5.03 Total: 14.37 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -31.65 -8.16 -39.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313432012.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.856 kcal (2) G-P(sol) polarization free energy of solvation -31.645 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.802 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds