Wall clock time and date at job start Mon Mar 30 2020 04:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30993 * 1 3 3 C 1.50701 * 119.99708 * 2 1 4 4 N 1.46907 * 109.47074 * 124.99548 * 3 2 1 5 5 C 1.46901 * 110.99707 * 179.97438 * 4 3 2 6 6 C 1.50706 * 109.46765 * 180.02562 * 5 4 3 7 7 O 1.21281 * 119.99966 * 0.02562 * 6 5 4 8 8 N 1.34780 * 119.99611 * 180.02562 * 6 5 4 9 9 C 1.39939 * 119.99522 * 174.89059 * 8 6 5 10 10 C 1.39295 * 119.94562 * 145.78068 * 9 8 6 11 11 C 1.38482 * 120.42847 * 179.97438 * 10 9 8 12 12 C 1.37690 * 120.32160 * 359.97438 * 11 10 9 13 13 C 1.40742 * 119.88304 * 0.02562 * 12 11 10 14 14 C 1.41413 * 120.20605 * 179.97438 * 13 12 11 15 15 H 1.07994 * 120.00078 * 205.17618 * 14 13 12 16 16 C 1.39927 * 119.99961 * 25.18243 * 14 13 12 17 17 N 1.30837 * 120.00511 * 16.78771 * 16 14 13 18 18 Si 1.86801 * 119.99944 * 196.78962 * 16 14 13 19 19 H 1.48502 * 109.47124 * 60.00092 * 18 16 14 20 20 H 1.48501 * 109.47283 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47156 * 300.00000 * 18 16 14 22 22 C 1.38236 * 119.94779 * 325.50877 * 9 8 6 23 23 H 1.07999 * 120.00513 * 0.02562 * 1 2 3 24 24 H 1.08006 * 119.99747 * 179.97438 * 1 2 3 25 25 H 1.07999 * 120.00513 * 179.97438 * 2 1 3 26 26 H 1.08991 * 109.47251 * 4.99622 * 3 2 1 27 27 H 1.09000 * 109.47133 * 244.99321 * 3 2 1 28 28 H 1.00907 * 110.99842 * 56.04664 * 4 3 2 29 29 H 1.08999 * 109.47436 * 299.99957 * 5 4 3 30 30 H 1.08993 * 109.47036 * 60.00289 * 5 4 3 31 31 H 0.97001 * 120.00131 * 354.88572 * 8 6 5 32 32 H 1.07998 * 119.78584 * 359.97438 * 10 9 8 33 33 H 1.08003 * 119.84028 * 180.02562 * 11 10 9 34 34 H 1.07995 * 120.05579 * 179.97438 * 12 11 10 35 35 H 0.96990 * 120.00342 * 180.02562 * 17 16 14 36 36 H 1.07997 * 120.16143 * 359.97438 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3099 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 2.9961 1.3321 1.1346 5 6 3.7502 2.5924 1.1663 6 6 4.6949 2.5831 2.3405 7 8 4.7362 1.6211 3.0780 8 7 5.4937 3.6439 2.5711 9 6 6.2925 3.6816 3.7195 10 6 7.5462 4.2871 3.6748 11 6 8.3447 4.3306 4.8054 12 6 7.9073 3.7757 5.9872 13 6 6.6428 3.1605 6.0473 14 6 6.1870 2.5879 7.2573 15 1 5.4561 1.7932 7.2369 16 6 6.6829 3.0512 8.4810 17 7 7.2996 4.2034 8.5430 18 14 6.4644 2.0245 10.0262 19 1 7.1293 0.7091 9.8445 20 1 7.0745 2.7316 11.1807 21 1 5.0165 1.8163 10.2815 22 6 5.8339 3.1229 4.8978 23 1 -0.5401 0.9353 -0.0004 24 1 -0.5400 -0.9354 -0.0004 25 1 1.8500 -0.9353 0.0004 26 1 1.3585 2.1316 0.0895 27 1 2.6213 1.4026 -0.9313 28 1 3.6192 0.5388 1.1094 29 1 4.3198 2.6984 0.2431 30 1 3.0572 3.4280 1.2637 31 1 5.5150 4.3810 1.9410 32 1 7.8977 4.7255 2.7526 33 1 9.3150 4.8029 4.7602 34 1 8.5337 3.8117 6.8661 35 1 7.6436 4.5244 9.3911 36 1 4.8600 2.6575 4.9346 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313432012.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:36:46 Heat of formation + Delta-G solvation = -13.971427 kcal Electronic energy + Delta-G solvation = -18236.576954 eV Core-core repulsion = 15298.920525 eV Total energy + Delta-G solvation = -2937.656429 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.20265 -39.07574 -37.42725 -36.15812 -34.82028 -33.94723 -31.75278 -30.45590 -28.19944 -27.24120 -24.91213 -23.09850 -22.64691 -21.34762 -20.70600 -19.52421 -18.19293 -17.46288 -17.00485 -16.90610 -16.46029 -16.13584 -15.84952 -15.47197 -14.92765 -14.83905 -14.51720 -13.93245 -13.82061 -13.51752 -13.29123 -13.00255 -12.91639 -12.77240 -12.76706 -12.18889 -11.97350 -11.91128 -11.52804 -11.14880 -10.86087 -10.62243 -10.44161 -9.40407 -9.36339 -8.74967 -8.60354 -6.37712 0.87539 1.00516 1.35595 1.35650 1.46931 1.50398 1.83313 2.19127 2.22473 2.73325 3.38539 3.69652 3.82846 3.99423 4.24675 4.36409 4.42462 4.47388 4.55931 4.63612 4.76613 5.02048 5.05490 5.10168 5.12826 5.24540 5.32946 5.71390 5.75497 5.82752 5.87159 5.97361 6.07904 6.11508 6.27011 6.35100 6.67556 6.70893 6.93549 7.01082 7.38130 8.32810 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.022614 B = 0.004222 C = 0.003626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.857189 B = 6630.418279 C = 7720.941794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.168 4.168 3 C 0.089 3.911 4 N -0.695 5.695 5 C 0.057 3.943 6 C 0.496 3.504 7 O -0.559 6.559 8 N -0.659 5.659 9 C 0.159 3.841 10 C -0.251 4.251 11 C -0.092 4.092 12 C -0.200 4.200 13 C 0.089 3.911 14 C -0.506 4.506 15 H 0.061 0.939 16 C 0.039 3.961 17 N -0.822 5.822 18 Si 0.981 3.019 19 H -0.263 1.263 20 H -0.259 1.259 21 H -0.263 1.263 22 C -0.238 4.238 23 H 0.104 0.896 24 H 0.107 0.893 25 H 0.108 0.892 26 H 0.085 0.915 27 H 0.057 0.943 28 H 0.346 0.654 29 H 0.096 0.904 30 H 0.124 0.876 31 H 0.422 0.578 32 H 0.134 0.866 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.290 0.710 36 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.719 -0.589 -15.716 17.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.187 4.187 3 C -0.039 4.039 4 N -0.328 5.328 5 C -0.075 4.075 6 C 0.284 3.716 7 O -0.435 6.435 8 N -0.306 5.306 9 C 0.066 3.934 10 C -0.272 4.272 11 C -0.110 4.110 12 C -0.220 4.220 13 C 0.087 3.913 14 C -0.535 4.535 15 H 0.080 0.920 16 C -0.176 4.176 17 N -0.448 5.448 18 Si 0.802 3.198 19 H -0.187 1.187 20 H -0.183 1.183 21 H -0.188 1.188 22 C -0.260 4.260 23 H 0.123 0.877 24 H 0.125 0.875 25 H 0.126 0.874 26 H 0.103 0.897 27 H 0.075 0.925 28 H 0.165 0.835 29 H 0.114 0.886 30 H 0.142 0.858 31 H 0.261 0.739 32 H 0.151 0.849 33 H 0.141 0.859 34 H 0.122 0.878 35 H 0.100 0.900 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.110 -0.871 -14.634 16.293 hybrid contribution 0.539 -0.278 0.051 0.608 sum -6.572 -1.149 -14.583 16.036 Atomic orbital electron populations 1.24000 0.95658 1.02779 0.99290 1.22915 0.96584 0.98158 1.01024 1.21150 0.94918 0.96669 0.91134 1.60155 1.22899 1.03812 1.45949 1.21802 0.95531 0.95566 0.94553 1.21585 0.80841 0.81742 0.87420 1.90751 1.67622 1.35385 1.49768 1.43366 1.42001 1.22252 1.23013 1.17514 0.91122 0.99314 0.85465 1.20490 0.94311 1.12963 0.99463 1.20852 0.98991 0.98624 0.92560 1.21316 0.96735 1.06232 0.97737 1.17824 0.91264 0.89849 0.92395 1.19729 1.23482 1.18536 0.91762 0.92027 1.26690 0.92255 0.95083 1.03606 1.69848 1.28762 1.16835 1.29343 0.85281 0.79676 0.78968 0.75918 1.18707 1.18278 1.18752 1.20934 0.99831 1.11554 0.93668 0.87746 0.87487 0.87423 0.89679 0.92501 0.83482 0.88609 0.85779 0.73946 0.84860 0.85864 0.87806 0.89957 0.90023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.79 14.32 67.79 0.97 -1.82 16 2 C -0.17 -2.95 9.78 25.65 0.25 -2.70 16 3 C 0.09 1.50 6.12 85.56 0.52 2.03 16 4 N -0.70 -16.63 6.12 -521.97 -3.19 -19.82 16 5 C 0.06 1.22 6.17 85.56 0.53 1.75 16 6 C 0.50 16.97 7.59 87.66 0.67 17.63 16 7 O -0.56 -25.83 13.96 -3.03 -0.04 -25.88 16 8 N -0.66 -22.00 5.34 -303.64 -1.62 -23.62 16 9 C 0.16 7.19 6.25 38.10 0.24 7.43 16 10 C -0.25 -10.54 9.97 22.58 0.23 -10.31 16 11 C -0.09 -4.22 10.02 22.20 0.22 -4.00 16 12 C -0.20 -10.97 8.69 22.75 0.20 -10.77 16 13 C 0.09 5.26 5.57 -21.31 -0.12 5.14 16 14 C -0.51 -30.03 9.05 23.46 0.21 -29.81 16 15 H 0.06 3.69 7.90 -2.91 -0.02 3.66 16 16 C 0.04 2.07 5.16 85.25 0.44 2.51 16 17 N -0.82 -44.55 10.94 21.82 0.24 -44.31 16 18 Si 0.98 40.80 29.59 68.60 2.03 42.83 16 19 H -0.26 -10.79 7.11 99.48 0.71 -10.08 16 20 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 21 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 22 C -0.24 -13.12 8.39 22.85 0.19 -12.93 16 23 H 0.10 1.43 7.84 -2.91 -0.02 1.41 16 24 H 0.11 1.43 8.06 -2.91 -0.02 1.41 16 25 H 0.11 1.86 8.06 -2.91 -0.02 1.84 16 26 H 0.08 1.30 7.79 -2.39 -0.02 1.28 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.35 8.91 8.42 -89.69 -0.76 8.15 16 29 H 0.10 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.12 2.13 8.14 -2.39 -0.02 2.11 16 31 H 0.42 9.70 8.82 -92.71 -0.82 8.88 16 32 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 33 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 34 H 0.10 5.88 6.17 -2.91 -0.02 5.86 16 35 H 0.29 14.07 8.30 -92.72 -0.77 13.30 16 36 H 0.08 4.80 6.48 -2.91 -0.02 4.78 16 Total: -1.00 -73.49 312.71 1.49 -72.00 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: -0.47 Total: 34.66 kcal Atomic # 6 Polarization: -40.41 SS G_CDS: 4.55 Total: -35.86 kcal Atomic # 7 Polarization: -83.18 SS G_CDS: -4.57 Total: -87.76 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.04 Total: -25.88 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.83 kcal Total: -73.49 1.49 -72.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313432012.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.032 kcal (2) G-P(sol) polarization free energy of solvation -73.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.003 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds