Wall clock time and date at job start Mon Mar 30 2020 04:10:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86801 * 119.99683 * 2 1 4 4 H 1.48500 * 109.47062 * 239.72406 * 3 2 1 5 5 H 1.48507 * 109.47194 * 359.72289 * 3 2 1 6 6 H 1.48497 * 109.46888 * 119.72314 * 3 2 1 7 7 C 1.39928 * 120.00061 * 179.72310 * 2 1 3 8 8 H 1.07998 * 119.99744 * 155.35584 * 7 2 1 9 9 C 1.41406 * 120.00170 * 335.35157 * 7 2 1 10 10 C 1.40779 * 120.20924 * 149.29342 * 9 7 2 11 11 C 1.37647 * 119.88309 * 179.80642 * 10 9 7 12 12 C 1.38535 * 120.32361 * 0.45343 * 11 10 9 13 13 C 1.39248 * 120.42386 * 359.78386 * 12 11 10 14 14 N 1.39938 * 119.94433 * 179.97438 * 13 12 11 15 15 C 1.34769 * 120.00329 * 145.31989 * 14 13 12 16 16 O 1.21289 * 119.99796 * 5.08801 * 15 14 13 17 17 C 1.50696 * 120.00343 * 185.09013 * 15 14 13 18 18 H 1.09003 * 109.91008 * 318.89425 * 17 15 14 19 19 C 1.53999 * 109.91696 * 79.99896 * 17 15 14 20 20 C 1.54600 * 105.13922 * 120.57892 * 19 17 15 21 21 C 1.54937 * 102.92212 * 21.95793 * 20 19 17 22 22 N 1.47899 * 109.91999 * 197.58780 * 17 15 14 23 23 C 1.38277 * 120.10849 * 359.97438 * 13 12 11 24 24 H 0.96997 * 119.99686 * 174.32019 * 1 2 3 25 25 H 1.08000 * 120.05771 * 0.02562 * 10 9 7 26 26 H 1.07992 * 119.83698 * 180.23293 * 11 10 9 27 27 H 1.07998 * 119.78516 * 179.75509 * 12 11 10 28 28 H 0.97006 * 119.99988 * 325.31805 * 14 13 12 29 29 H 1.09003 * 110.30599 * 239.49447 * 19 17 15 30 30 H 1.08994 * 110.30645 * 1.56702 * 19 17 15 31 31 H 1.09001 * 110.72144 * 140.31221 * 20 19 17 32 32 H 1.08996 * 110.72501 * 263.42199 * 20 19 17 33 33 H 1.09002 * 110.66959 * 81.02194 * 21 20 19 34 34 H 1.09000 * 110.67025 * 203.98474 * 21 20 19 35 35 H 1.00896 * 111.00363 * 335.83232 * 22 17 15 36 36 H 1.08005 * 120.16279 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.1011 1.6936 -1.2091 5 1 1.2772 2.7465 -0.0068 6 1 3.0909 1.6994 1.2159 7 6 2.0080 -1.2118 0.0059 8 1 3.0142 -1.2562 -0.3839 9 6 1.3977 -2.3782 0.5222 10 6 1.7322 -3.6426 0.0014 11 6 1.1369 -4.7739 0.5117 12 6 0.2026 -4.6740 1.5297 13 6 -0.1417 -3.4296 2.0512 14 7 -1.0872 -3.3404 3.0791 15 6 -0.9581 -2.3976 4.0334 16 8 -0.0763 -1.5688 3.9518 17 6 -1.9092 -2.3731 5.2021 18 1 -2.9235 -2.5782 4.8595 19 6 -1.4855 -3.4236 6.2454 20 6 -1.2219 -2.6223 7.5410 21 6 -2.0372 -1.3239 7.3174 22 7 -1.8552 -1.0538 5.8682 23 6 0.4490 -2.2820 1.5552 24 1 -0.4849 -0.8359 -0.0831 25 1 2.4572 -3.7251 -0.7948 26 1 1.3969 -5.7437 0.1142 27 1 -0.2620 -5.5670 1.9210 28 1 -1.8355 -3.9571 3.1047 29 1 -2.2873 -4.1449 6.4032 30 1 -0.5775 -3.9327 5.9224 31 1 -1.5910 -3.1644 8.4116 32 1 -0.1601 -2.4006 7.6481 33 1 -3.0899 -1.4859 7.5493 34 1 -1.6337 -0.5081 7.9171 35 1 -0.9730 -0.5964 5.6937 36 1 0.1829 -1.3165 1.9593 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000313437201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:43 Heat of formation + Delta-G solvation = -21.832579 kcal Electronic energy + Delta-G solvation = -19260.949645 eV Core-core repulsion = 16322.952332 eV Total energy + Delta-G solvation = -2937.997314 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.22292 -38.16240 -36.84384 -34.52388 -33.29284 -30.03872 -29.96999 -29.29643 -27.89132 -25.07061 -23.09622 -21.47682 -21.22316 -20.63100 -19.53838 -18.22118 -17.29073 -15.99667 -15.66065 -15.33479 -14.78003 -14.28808 -14.05474 -13.90388 -13.79462 -13.42265 -13.08269 -12.70775 -12.17835 -12.02905 -11.77770 -11.56226 -11.27626 -11.14013 -10.99320 -10.94435 -10.53710 -10.37618 -10.30622 -9.79669 -9.29778 -8.98852 -8.85388 -8.72446 -7.53088 -7.24461 -6.97209 -4.38337 2.49211 2.84117 3.15827 3.23541 3.35779 3.45179 3.50615 4.12347 4.20018 4.54951 4.62899 4.69052 4.91466 5.05939 5.28032 5.32967 5.53252 5.57714 5.66017 5.72894 5.80281 6.01568 6.07175 6.30045 6.57510 6.60753 6.82176 6.92384 7.02643 7.34321 7.43893 7.56366 7.74358 7.85107 7.87427 8.13134 8.23841 8.32735 8.66073 8.81629 8.97167 10.16639 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018771 B = 0.006632 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.313920 B = 4221.110806 C = 5390.950087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.794 5.794 2 C 0.041 3.959 3 Si 1.064 2.936 4 H -0.277 1.277 5 H -0.274 1.274 6 H -0.275 1.275 7 C -0.525 4.525 8 H 0.076 0.924 9 C 0.105 3.895 10 C -0.236 4.236 11 C -0.072 4.072 12 C -0.274 4.274 13 C 0.155 3.845 14 N -0.664 5.664 15 C 0.502 3.498 16 O -0.509 6.509 17 C 0.057 3.943 18 H 0.104 0.896 19 C -0.140 4.140 20 C -0.157 4.157 21 C 0.043 3.957 22 N -0.659 5.659 23 C -0.202 4.202 24 H 0.295 0.705 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.091 0.909 28 H 0.400 0.600 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.357 0.643 36 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.036 -4.715 11.025 13.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.417 5.417 2 C -0.181 4.181 3 Si 0.888 3.112 4 H -0.203 1.203 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.553 4.553 8 H 0.094 0.906 9 C 0.101 3.899 10 C -0.256 4.256 11 C -0.091 4.091 12 C -0.295 4.295 13 C 0.063 3.937 14 N -0.308 5.308 15 C 0.288 3.712 16 O -0.383 6.383 17 C -0.057 4.057 18 H 0.122 0.878 19 C -0.180 4.180 20 C -0.196 4.196 21 C -0.087 4.087 22 N -0.291 5.291 23 C -0.223 4.223 24 H 0.108 0.892 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.109 0.891 28 H 0.234 0.766 29 H 0.097 0.903 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.178 0.822 36 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.343 -2.198 10.895 12.332 hybrid contribution 0.637 -2.702 0.184 2.783 sum -4.706 -4.901 11.078 12.996 Atomic orbital electron populations 1.70448 1.08177 1.33921 1.29126 1.26954 0.95670 1.04188 0.91291 0.83657 0.75697 0.74014 0.77814 1.20259 1.19866 1.19998 1.20485 1.02711 0.94046 1.38040 0.90624 1.17598 0.90235 0.92787 0.89256 1.21026 1.07367 0.92981 1.04198 1.20350 0.96140 0.96751 0.95890 1.20003 1.08511 0.93871 1.07119 1.17562 0.92550 0.94427 0.89174 1.43372 1.27497 1.34518 1.25407 1.20670 0.85743 0.81433 0.83397 1.90746 1.34281 1.36873 1.76417 1.22394 0.99357 0.90729 0.93258 0.87784 1.22750 1.02427 0.98108 0.94678 1.23118 1.01229 0.97656 0.97565 1.23146 1.00350 0.96142 0.89069 1.62816 1.41800 1.17037 1.07444 1.21367 1.04649 0.97010 0.99233 0.89162 0.88818 0.88894 0.89094 0.76647 0.90298 0.90862 0.90631 0.91198 0.90126 0.90437 0.82240 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -22.38 12.49 55.55 0.69 -21.69 16 2 C 0.04 1.10 4.92 -17.34 -0.09 1.01 16 3 Si 1.06 23.15 30.00 -169.99 -5.10 18.05 16 4 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 5 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 6 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 7 C -0.52 -14.66 8.96 -37.74 -0.34 -15.00 16 8 H 0.08 2.04 7.96 -52.49 -0.42 1.63 16 9 C 0.10 2.90 5.18 -106.85 -0.55 2.35 16 10 C -0.24 -5.93 9.79 -38.84 -0.38 -6.31 16 11 C -0.07 -1.62 10.02 -39.69 -0.40 -2.02 16 12 C -0.27 -5.98 9.97 -39.10 -0.39 -6.37 16 13 C 0.16 3.61 6.30 -83.77 -0.53 3.08 16 14 N -0.66 -12.37 5.33 -9.91 -0.05 -12.42 16 15 C 0.50 9.51 6.71 -10.99 -0.07 9.44 16 16 O -0.51 -12.04 12.98 5.55 0.07 -11.97 16 17 C 0.06 0.79 3.81 -67.80 -0.26 0.53 16 18 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 19 C -0.14 -1.59 6.56 -25.37 -0.17 -1.75 16 20 C -0.16 -1.59 7.06 -24.87 -0.18 -1.77 16 21 C 0.04 0.45 7.55 -1.90 -0.01 0.44 16 22 N -0.66 -9.54 7.39 -104.34 -0.77 -10.31 16 23 C -0.20 -5.45 6.66 -38.69 -0.26 -5.70 16 24 H 0.30 8.54 6.87 -40.82 -0.28 8.26 16 25 H 0.09 2.23 8.06 -52.49 -0.42 1.81 16 26 H 0.09 1.78 8.06 -52.49 -0.42 1.36 16 27 H 0.09 1.70 8.06 -52.49 -0.42 1.27 16 28 H 0.40 5.76 8.82 -40.82 -0.36 5.40 16 29 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.94 7.68 -51.93 -0.40 0.54 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.36 5.89 7.31 -39.29 -0.29 5.60 16 36 H 0.13 3.77 4.96 -52.48 -0.26 3.51 16 LS Contribution 299.63 15.07 4.52 4.52 Total: -1.00 -31.50 299.63 -8.87 -40.37 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -4.61 Total: 15.53 kcal Atomic # 6 Polarization: -18.45 SS G_CDS: -3.62 Total: -22.07 kcal Atomic # 7 Polarization: -44.29 SS G_CDS: -0.13 Total: -44.42 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: 0.07 Total: -11.97 kcal Atomic # 14 Polarization: 23.15 SS G_CDS: -5.10 Total: 18.05 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -31.50 -8.87 -40.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313437201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.536 kcal (2) G-P(sol) polarization free energy of solvation -31.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds