Wall clock time and date at job start Mon Mar 30 2020 04:10:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30837 * 1 3 3 Si 1.86801 * 119.99683 * 2 1 4 4 H 1.48500 * 109.47062 * 239.72406 * 3 2 1 5 5 H 1.48507 * 109.47194 * 359.72289 * 3 2 1 6 6 H 1.48497 * 109.46888 * 119.72314 * 3 2 1 7 7 C 1.39928 * 120.00061 * 179.72310 * 2 1 3 8 8 H 1.07998 * 119.99744 * 155.35584 * 7 2 1 9 9 C 1.41406 * 120.00170 * 335.35157 * 7 2 1 10 10 C 1.40779 * 120.20924 * 149.29342 * 9 7 2 11 11 C 1.37647 * 119.88309 * 179.80642 * 10 9 7 12 12 C 1.38535 * 120.32361 * 0.45343 * 11 10 9 13 13 C 1.39248 * 120.42386 * 359.78386 * 12 11 10 14 14 N 1.39938 * 119.94433 * 179.97438 * 13 12 11 15 15 C 1.34769 * 120.00329 * 145.31989 * 14 13 12 16 16 O 1.21289 * 119.99796 * 5.08801 * 15 14 13 17 17 C 1.50696 * 120.00343 * 185.09013 * 15 14 13 18 18 H 1.09003 * 109.91008 * 318.89425 * 17 15 14 19 19 C 1.53999 * 109.91696 * 79.99896 * 17 15 14 20 20 C 1.54600 * 105.13922 * 120.57892 * 19 17 15 21 21 C 1.54937 * 102.92212 * 21.95793 * 20 19 17 22 22 N 1.47899 * 109.91999 * 197.58780 * 17 15 14 23 23 C 1.38277 * 120.10849 * 359.97438 * 13 12 11 24 24 H 0.96997 * 119.99686 * 174.32019 * 1 2 3 25 25 H 1.08000 * 120.05771 * 0.02562 * 10 9 7 26 26 H 1.07992 * 119.83698 * 180.23293 * 11 10 9 27 27 H 1.07998 * 119.78516 * 179.75509 * 12 11 10 28 28 H 0.97006 * 119.99988 * 325.31805 * 14 13 12 29 29 H 1.09003 * 110.30599 * 239.49447 * 19 17 15 30 30 H 1.08994 * 110.30645 * 1.56702 * 19 17 15 31 31 H 1.09001 * 110.72144 * 140.31221 * 20 19 17 32 32 H 1.08996 * 110.72501 * 263.42199 * 20 19 17 33 33 H 1.09002 * 110.66959 * 81.02194 * 21 20 19 34 34 H 1.09000 * 110.67025 * 203.98474 * 21 20 19 35 35 H 1.00896 * 111.00363 * 335.83232 * 22 17 15 36 36 H 1.08005 * 120.16279 * 180.02562 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3084 0.0000 0.0000 3 14 2.2423 1.6178 0.0000 4 1 3.1011 1.6936 -1.2091 5 1 1.2772 2.7465 -0.0068 6 1 3.0909 1.6994 1.2159 7 6 2.0080 -1.2118 0.0059 8 1 3.0142 -1.2562 -0.3839 9 6 1.3977 -2.3782 0.5222 10 6 1.7322 -3.6426 0.0014 11 6 1.1369 -4.7739 0.5117 12 6 0.2026 -4.6740 1.5297 13 6 -0.1417 -3.4296 2.0512 14 7 -1.0872 -3.3404 3.0791 15 6 -0.9581 -2.3976 4.0334 16 8 -0.0763 -1.5688 3.9518 17 6 -1.9092 -2.3731 5.2021 18 1 -2.9235 -2.5782 4.8595 19 6 -1.4855 -3.4236 6.2454 20 6 -1.2219 -2.6223 7.5410 21 6 -2.0372 -1.3239 7.3174 22 7 -1.8552 -1.0538 5.8682 23 6 0.4490 -2.2820 1.5552 24 1 -0.4849 -0.8359 -0.0831 25 1 2.4572 -3.7251 -0.7948 26 1 1.3969 -5.7437 0.1142 27 1 -0.2620 -5.5670 1.9210 28 1 -1.8355 -3.9571 3.1047 29 1 -2.2873 -4.1449 6.4032 30 1 -0.5775 -3.9327 5.9224 31 1 -1.5910 -3.1644 8.4116 32 1 -0.1601 -2.4006 7.6481 33 1 -3.0899 -1.4859 7.5493 34 1 -1.6337 -0.5081 7.9171 35 1 -0.9730 -0.5964 5.6937 36 1 0.1829 -1.3165 1.9593 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000313437201.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:10:42 Heat of formation + Delta-G solvation = -44.457473 kcal Electronic energy + Delta-G solvation = -19261.930734 eV Core-core repulsion = 16322.952332 eV Total energy + Delta-G solvation = -2938.978403 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 260.127 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.69128 -39.67406 -38.33831 -36.33702 -35.14114 -31.43615 -31.18284 -30.94946 -29.41044 -27.07074 -24.48640 -23.09649 -22.42240 -22.17472 -20.99607 -20.05419 -18.71444 -17.65923 -16.91374 -16.79149 -16.45747 -15.94242 -15.69606 -15.39727 -14.95368 -14.72062 -14.71215 -14.30105 -13.91288 -13.80682 -13.07346 -12.79010 -12.73287 -12.52971 -12.37777 -12.24649 -12.12493 -12.00863 -11.75791 -11.62516 -11.08185 -10.84910 -10.65469 -9.77941 -9.49872 -9.27029 -8.86528 -6.48503 0.68740 0.92442 1.43985 1.52797 1.66023 1.74243 2.06751 2.31227 2.68428 3.16075 3.49803 3.53810 3.74485 3.84502 4.09086 4.34659 4.37373 4.47538 4.54911 4.70161 4.73261 4.84519 4.91545 4.97153 5.02042 5.06777 5.08321 5.19193 5.53079 5.60678 5.71758 5.79243 5.85200 5.88401 6.13719 6.26478 6.36406 6.52938 6.77469 6.96201 7.19402 8.06275 Molecular weight = 260.13amu Principal moments of inertia in cm(-1) A = 0.018771 B = 0.006632 C = 0.005193 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1491.313920 B = 4221.110806 C = 5390.950087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.003 3.997 3 Si 1.112 2.888 4 H -0.249 1.249 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.568 4.568 8 H 0.071 0.929 9 C 0.073 3.927 10 C -0.252 4.252 11 C -0.070 4.070 12 C -0.254 4.254 13 C 0.154 3.846 14 N -0.654 5.654 15 C 0.496 3.504 16 O -0.563 6.563 17 C 0.065 3.935 18 H 0.129 0.871 19 C -0.134 4.134 20 C -0.152 4.152 21 C 0.042 3.958 22 N -0.679 5.679 23 C -0.229 4.229 24 H 0.277 0.723 25 H 0.098 0.902 26 H 0.136 0.864 27 H 0.138 0.862 28 H 0.423 0.577 29 H 0.115 0.885 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.053 0.947 33 H 0.101 0.899 34 H 0.085 0.915 35 H 0.340 0.660 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.234 -6.947 12.633 15.707 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.444 5.444 2 C -0.212 4.212 3 Si 0.929 3.071 4 H -0.173 1.173 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.596 4.596 8 H 0.089 0.911 9 C 0.070 3.930 10 C -0.272 4.272 11 C -0.088 4.088 12 C -0.275 4.275 13 C 0.060 3.940 14 N -0.299 5.299 15 C 0.284 3.716 16 O -0.440 6.440 17 C -0.048 4.048 18 H 0.147 0.853 19 C -0.174 4.174 20 C -0.191 4.191 21 C -0.087 4.087 22 N -0.310 5.310 23 C -0.250 4.250 24 H 0.089 0.911 25 H 0.116 0.884 26 H 0.154 0.846 27 H 0.155 0.845 28 H 0.261 0.739 29 H 0.133 0.867 30 H 0.075 0.925 31 H 0.124 0.876 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.103 0.897 35 H 0.159 0.841 36 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -6.585 -4.491 12.513 14.836 hybrid contribution 0.951 -2.237 -0.221 2.441 sum -5.635 -6.728 12.292 15.103 Atomic orbital electron populations 1.70563 1.08909 1.32605 1.32321 1.28330 0.95739 1.07387 0.89773 0.83099 0.74917 0.70133 0.78934 1.17321 1.19523 1.19758 1.20679 1.02991 0.95464 1.40501 0.91101 1.17963 0.91122 0.93998 0.89934 1.21254 1.08038 0.93177 1.04766 1.20835 0.95033 0.97643 0.95310 1.20556 1.06860 0.94620 1.05469 1.17746 0.92610 0.93996 0.89633 1.43302 1.27375 1.35104 1.24139 1.21709 0.85671 0.80029 0.84219 1.90733 1.36807 1.38830 1.77635 1.22537 0.98830 0.91740 0.91733 0.85308 1.22789 1.02860 0.97816 0.93917 1.23106 1.00374 0.97445 0.98171 1.23303 1.01717 0.96811 0.86830 1.62918 1.40704 1.17380 1.10018 1.21218 1.06367 0.97177 1.00246 0.91117 0.88363 0.84574 0.84471 0.73896 0.86700 0.92549 0.87585 0.92793 0.88079 0.89691 0.84133 0.88573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -48.96 12.49 21.82 0.27 -48.69 16 2 C 0.00 0.16 4.92 85.25 0.42 0.58 16 3 Si 1.11 48.45 30.00 68.60 2.06 50.50 16 4 H -0.25 -9.65 7.11 99.48 0.71 -8.94 16 5 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 7 C -0.57 -33.47 8.96 23.46 0.21 -33.26 16 8 H 0.07 4.05 7.96 -2.91 -0.02 4.03 16 9 C 0.07 4.20 5.18 -21.31 -0.11 4.09 16 10 C -0.25 -12.75 9.79 22.75 0.22 -12.53 16 11 C -0.07 -2.94 10.02 22.20 0.22 -2.72 16 12 C -0.25 -10.29 9.97 22.58 0.23 -10.06 16 13 C 0.15 7.06 6.30 38.10 0.24 7.30 16 14 N -0.65 -23.51 5.33 -303.67 -1.62 -25.13 16 15 C 0.50 18.75 6.71 87.66 0.59 19.34 16 16 O -0.56 -27.85 12.98 -3.06 -0.04 -27.89 16 17 C 0.06 1.70 3.81 44.31 0.17 1.87 16 18 H 0.13 2.74 8.14 -2.39 -0.02 2.72 16 19 C -0.13 -2.62 6.56 31.48 0.21 -2.42 16 20 C -0.15 -2.66 7.06 31.80 0.22 -2.43 16 21 C 0.04 0.80 7.55 86.65 0.65 1.45 16 22 N -0.68 -19.14 7.39 -484.02 -3.57 -22.72 16 23 C -0.23 -12.85 6.66 22.85 0.15 -12.70 16 24 H 0.28 17.15 6.87 -92.71 -0.64 16.51 16 25 H 0.10 4.73 8.06 -2.91 -0.02 4.70 16 26 H 0.14 4.57 8.06 -2.91 -0.02 4.55 16 27 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 28 H 0.42 10.92 8.82 -92.70 -0.82 10.11 16 29 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.06 1.31 7.68 -2.39 -0.02 1.29 16 31 H 0.11 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.05 1.11 8.14 -2.39 -0.02 1.10 16 33 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 34 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.34 11.59 7.31 -89.70 -0.66 10.93 16 36 H 0.10 6.03 4.96 -2.91 -0.01 6.01 16 Total: -1.00 -74.47 299.63 0.29 -74.18 By element: Atomic # 1 Polarization: 41.45 SS G_CDS: -0.23 Total: 41.22 kcal Atomic # 6 Polarization: -44.89 SS G_CDS: 3.42 Total: -41.47 kcal Atomic # 7 Polarization: -91.62 SS G_CDS: -4.92 Total: -96.54 kcal Atomic # 8 Polarization: -27.85 SS G_CDS: -0.04 Total: -27.89 kcal Atomic # 14 Polarization: 48.45 SS G_CDS: 2.06 Total: 50.50 kcal Total: -74.47 0.29 -74.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000313437201.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.722 kcal (2) G-P(sol) polarization free energy of solvation -74.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds